| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87201004
Identifier: 87201004
GI number: 87201004
Start: 3208281
End: 3208880
Strand: Reverse
Name: 87201004
Synonym: Saro_2992
Alternate gene names: NA
Gene position: 3208880-3208281 (Counterclockwise)
Preceding gene: 87201005
Following gene: 87201003
Centisome position: 90.1
GC content: 64.0
Gene sequence:
>600_bases ATGACCGCGCGTGTGGGCAACCCTTTCCCGTTCTTCCTCGACCGTTCGGGCCTCCCACTTGATGGCGGCTCGATCTACGT CGGCACAGCAGGCGATGACCCGGAAATTTCCCCGGTCACGGTCTATCTGGACAGCGCCCTGTCCATCGTCGCGCCGCAGC CTCTCCAGGTGGTCGGCGGGCTGATCTGCAACGACGGCAACCCAACCGCATTCTATGTCAGCGGCTCGAACTATTCGATG CGGGTTCGTGATGCGGACGGCGCGGAGGTGTTCTATGTCGCCTCTGCGGTTGTCGGTGCGGACGATTACCAGCCCCTTGA TGCGGACCTAACGGCCATTGCCGCTCTCGCAACGACACCTTACGGGCGGGCGATCCTGACGGCTGCCTCTGCGGCGGCGG CGCGCTCCTATCTCGGCATTGTGGACAGCCTCCCGCTTACGGGTGGCACGGTTAGCGGCAACGTGGTGCGTTCGAGCGCA GGCCCGCACCTCTATCATACCGACAACTCCTACGTTTCGGGCCGGGTTTTCGTGACGGCCAACGGCGCTGCTGATCCCAC CTCGCAGGTCGGGGATGTCTGGCTGGAGCTTTCCGCATGA
Upstream 100 bases:
>100_bases GCTCCCACGCTGCCTGTTCCTTCGGAGAATGAGGGAAAAACAGGAAAACGAGGGGAAGGCCAATGACCCAGCGTAACCGC AGCATCCCCGGAGAATACGC
Downstream 100 bases:
>100_bases TCCGGGTTCGGACAGCGGATGGCCTCAAGGCCATTGCGGTAGCGCGAGTGCGCGGCGAGGCGGGGTTGCAGTCTGTAGCC TCTGGCTGGCTGCGCATGTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 199; Mature: 198
Protein sequence:
>199_residues MTARVGNPFPFFLDRSGLPLDGGSIYVGTAGDDPEISPVTVYLDSALSIVAPQPLQVVGGLICNDGNPTAFYVSGSNYSM RVRDADGAEVFYVASAVVGADDYQPLDADLTAIAALATTPYGRAILTAASAAAARSYLGIVDSLPLTGGTVSGNVVRSSA GPHLYHTDNSYVSGRVFVTANGAADPTSQVGDVWLELSA
Sequences:
>Translated_199_residues MTARVGNPFPFFLDRSGLPLDGGSIYVGTAGDDPEISPVTVYLDSALSIVAPQPLQVVGGLICNDGNPTAFYVSGSNYSM RVRDADGAEVFYVASAVVGADDYQPLDADLTAIAALATTPYGRAILTAASAAAARSYLGIVDSLPLTGGTVSGNVVRSSA GPHLYHTDNSYVSGRVFVTANGAADPTSQVGDVWLELSA >Mature_198_residues TARVGNPFPFFLDRSGLPLDGGSIYVGTAGDDPEISPVTVYLDSALSIVAPQPLQVVGGLICNDGNPTAFYVSGSNYSMR VRDADGAEVFYVASAVVGADDYQPLDADLTAIAALATTPYGRAILTAASAAAARSYLGIVDSLPLTGGTVSGNVVRSSAG PHLYHTDNSYVSGRVFVTANGAADPTSQVGDVWLELSA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20394; Mature: 20263
Theoretical pI: Translated: 4.00; Mature: 4.00
Prosite motif: PS00144 ASN_GLN_ASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTARVGNPFPFFLDRSGLPLDGGSIYVGTAGDDPEISPVTVYLDSALSIVAPQPLQVVGG CCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEEECCEEEECCCCHHHCCE LICNDGNPTAFYVSGSNYSMRVRDADGAEVFYVASAVVGADDYQPLDADLTAIAALATTP EEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCHHHHHHHHCCC YGRAILTAASAAAARSYLGIVDSLPLTGGTVSGNVVRSSAGPHLYHTDNSYVSGRVFVTA CCCEEEHHHHHHHHHHHHHHHHCCCCCCCCEECCEEECCCCCEEEECCCCEEEEEEEEEE NGAADPTSQVGDVWLELSA CCCCCCCCCCCEEEEEECC >Mature Secondary Structure TARVGNPFPFFLDRSGLPLDGGSIYVGTAGDDPEISPVTVYLDSALSIVAPQPLQVVGG CCCCCCCCCEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEEECCEEEECCCCHHHCCE LICNDGNPTAFYVSGSNYSMRVRDADGAEVFYVASAVVGADDYQPLDADLTAIAALATTP EEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCHHHHHHHHCCC YGRAILTAASAAAARSYLGIVDSLPLTGGTVSGNVVRSSAGPHLYHTDNSYVSGRVFVTA CCCEEEHHHHHHHHHHHHHHHHCCCCCCCCEECCEEECCCCCEEEECCCCEEEEEEEEEE NGAADPTSQVGDVWLELSA CCCCCCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA