| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87201002
Identifier: 87201002
GI number: 87201002
Start: 3206684
End: 3207823
Strand: Reverse
Name: 87201002
Synonym: Saro_2990
Alternate gene names: NA
Gene position: 3207823-3206684 (Counterclockwise)
Preceding gene: 87201003
Following gene: 87201001
Centisome position: 90.07
GC content: 64.04
Gene sequence:
>1140_bases ATGAACTCGTTCAACGACATTGTTCGCGATCTTGATGGCGTGATCGTCACCGGGGCGAACGTCTATGTCTATGACAGCAG CGGCGGGCTTGCCTCCCTGTTCGAGAGCGATGGGACGACGCCCAAGGCAAACCCGCTCGTCAGCGATGCGCTCGGGGAAA TCGAGGCATGGACGGAAGACGGCTTCTACTCGCTCGAATACTTCTGGAACGGGCGCAAGCGGCTGATCCGCTCGAATGTC CTGATCGGCACGGCTCCGCTCGATACAGCGGTTATCAGTGCTGCGGGCTATGCCACGGCACTGGAGGTCGGCACGGCAGG CGGTTGGTATGACAGCCTCGCGGCGGGTGCGGCTGATCCAGCGGTTGCCGAGGGTGATGGCTATTTCTACCTGACCGGAA GCCGGTTCTACATCGGGCAGAAAGTCGGCGGCGTAGGCGTCCAGAAAGCCGAGTTCCTGACGACGGCCTCCGGGCTGATC GGCATGGTCACGGGAACGCCCCTTGGACCGATCAACGGCCTTTCACCGGCTGCGGACAAGCTGCCCTATTACACCGGAGC CACGACGGCATCCCTTGCGGACCTGACCGCGCAGGCCCGGACCTTCCTAGCTGCGGCCACGGCAGCGGACCAGCAGGCGG CTATCGGTGTGTCCGCGTTCATTCGCGGGCTTCTTGACGATATCGACGCTGCCACAGCGCGGGCTACGCTTGGCGTAGTG CCGGGAACGGACGTGCAGGCATATGACGGCGATCTGGCTGCTATCGCTGCGCTGACGACGACGAGTTTCGGGCGCTCTCT CCTGACCATGGCGGATGCAGCAGCGGCGCGTTCTGCAATCGGGGCGAATGGCTCGCCCACCGTGGCGGGTTCGTCGGGAA CCGGGTGGGCAATCACGCTGGGGGGCGGGATCGTTATCACGGTGAAGGATATCACTGTCGCTGCCGGTTCCACCACTTCG CAGACCTACGGCAACGGACACACCTATTCGGTTTTCGCGCGGGCATGGATCGCGGGCGACGATGCGACCGGGGACGTGTC GGTAACTGTCGCTTCCGCCACCAGCGGGCTTTCTGCGGCGTCGGTGCGCTCGAACGCATCCGGCTCCGTGACCGTCACCC TCTTCTCCATCGGGCAGTGA
Upstream 100 bases:
>100_bases ATTACACCGCCACATTCCTCTGCACGGCAACTGACAGCACCGGGGGCACCGGGACGGTCGAAGTGCAGGCCACGGCATCC AACCTCGGGAACCTCTACCT
Downstream 100 bases:
>100_bases TATGACCTACGTAAAAGCATACACCCGCCAGCATGACGAGTTCATTGCCGACGCCACTGCGGCAATTCAGCCTCTGGTGG ATGCAGCGGCAGGATCAGCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 379; Mature: 379
Protein sequence:
>379_residues MNSFNDIVRDLDGVIVTGANVYVYDSSGGLASLFESDGTTPKANPLVSDALGEIEAWTEDGFYSLEYFWNGRKRLIRSNV LIGTAPLDTAVISAAGYATALEVGTAGGWYDSLAAGAADPAVAEGDGYFYLTGSRFYIGQKVGGVGVQKAEFLTTASGLI GMVTGTPLGPINGLSPAADKLPYYTGATTASLADLTAQARTFLAAATAADQQAAIGVSAFIRGLLDDIDAATARATLGVV PGTDVQAYDGDLAAIAALTTTSFGRSLLTMADAAAARSAIGANGSPTVAGSSGTGWAITLGGGIVITVKDITVAAGSTTS QTYGNGHTYSVFARAWIAGDDATGDVSVTVASATSGLSAASVRSNASGSVTVTLFSIGQ
Sequences:
>Translated_379_residues MNSFNDIVRDLDGVIVTGANVYVYDSSGGLASLFESDGTTPKANPLVSDALGEIEAWTEDGFYSLEYFWNGRKRLIRSNV LIGTAPLDTAVISAAGYATALEVGTAGGWYDSLAAGAADPAVAEGDGYFYLTGSRFYIGQKVGGVGVQKAEFLTTASGLI GMVTGTPLGPINGLSPAADKLPYYTGATTASLADLTAQARTFLAAATAADQQAAIGVSAFIRGLLDDIDAATARATLGVV PGTDVQAYDGDLAAIAALTTTSFGRSLLTMADAAAARSAIGANGSPTVAGSSGTGWAITLGGGIVITVKDITVAAGSTTS QTYGNGHTYSVFARAWIAGDDATGDVSVTVASATSGLSAASVRSNASGSVTVTLFSIGQ >Mature_379_residues MNSFNDIVRDLDGVIVTGANVYVYDSSGGLASLFESDGTTPKANPLVSDALGEIEAWTEDGFYSLEYFWNGRKRLIRSNV LIGTAPLDTAVISAAGYATALEVGTAGGWYDSLAAGAADPAVAEGDGYFYLTGSRFYIGQKVGGVGVQKAEFLTTASGLI GMVTGTPLGPINGLSPAADKLPYYTGATTASLADLTAQARTFLAAATAADQQAAIGVSAFIRGLLDDIDAATARATLGVV PGTDVQAYDGDLAAIAALTTTSFGRSLLTMADAAAARSAIGANGSPTVAGSSGTGWAITLGGGIVITVKDITVAAGSTTS QTYGNGHTYSVFARAWIAGDDATGDVSVTVASATSGLSAASVRSNASGSVTVTLFSIGQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38016; Mature: 38016
Theoretical pI: Translated: 4.09; Mature: 4.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSFNDIVRDLDGVIVTGANVYVYDSSGGLASLFESDGTTPKANPLVSDALGEIEAWTED CCCHHHHHHHCCCEEEECCEEEEEECCCCCHHHHHCCCCCCCCCCHHHHHHHHHEEECCC GFYSLEYFWNGRKRLIRSNVLIGTAPLDTAVISAAGYATALEVGTAGGWYDSLAAGAADP CCEEEEEEECCHHHHHHCCEEEEECCCHHHHHHHCCCEEEEEECCCCCCHHHHHCCCCCC AVAEGDGYFYLTGSRFYIGQKVGGVGVQKAEFLTTASGLIGMVTGTPLGPINGLSPAADK CEECCCCEEEEECCEEEEECCCCCCCCCHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHC LPYYTGATTASLADLTAQARTFLAAATAADQQAAIGVSAFIRGLLDDIDAATARATLGVV CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECC PGTDVQAYDGDLAAIAALTTTSFGRSLLTMADAAAARSAIGANGSPTVAGSSGTGWAITL CCCCCEECCCCEEEHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCEEEEE GGGIVITVKDITVAAGSTTSQTYGNGHTYSVFARAWIAGDDATGDVSVTVASATSGLSAA CCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEECCCCCCEEEEEEEECCCCCCHH SVRSNASGSVTVTLFSIGQ HHCCCCCCEEEEEEEECCC >Mature Secondary Structure MNSFNDIVRDLDGVIVTGANVYVYDSSGGLASLFESDGTTPKANPLVSDALGEIEAWTED CCCHHHHHHHCCCEEEECCEEEEEECCCCCHHHHHCCCCCCCCCCHHHHHHHHHEEECCC GFYSLEYFWNGRKRLIRSNVLIGTAPLDTAVISAAGYATALEVGTAGGWYDSLAAGAADP CCEEEEEEECCHHHHHHCCEEEEECCCHHHHHHHCCCEEEEEECCCCCCHHHHHCCCCCC AVAEGDGYFYLTGSRFYIGQKVGGVGVQKAEFLTTASGLIGMVTGTPLGPINGLSPAADK CEECCCCEEEEECCEEEEECCCCCCCCCHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHC LPYYTGATTASLADLTAQARTFLAAATAADQQAAIGVSAFIRGLLDDIDAATARATLGVV CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECC PGTDVQAYDGDLAAIAALTTTSFGRSLLTMADAAAARSAIGANGSPTVAGSSGTGWAITL CCCCCEECCCCEEEHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCEEEEE GGGIVITVKDITVAAGSTTSQTYGNGHTYSVFARAWIAGDDATGDVSVTVASATSGLSAA CCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEECCCCCCEEEEEEEECCCCCCHH SVRSNASGSVTVTLFSIGQ HHCCCCCCEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA