| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200961
Identifier: 87200961
GI number: 87200961
Start: 3166923
End: 3167936
Strand: Reverse
Name: 87200961
Synonym: Saro_2949
Alternate gene names: NA
Gene position: 3167936-3166923 (Counterclockwise)
Preceding gene: 87200962
Following gene: 87200960
Centisome position: 88.95
GC content: 66.67
Gene sequence:
>1014_bases ATGCGCCGCAACGGTTTTCTCGCCTGGCACCGTCGTCTTGCCCTGATCTTCGCGCCTTTGCTGCTGCTTCAGGCGCTGAC CGGCGCGGTGCTCGTTTTCCACGACGACCTCGTCGCTCTGATAGATCCGGCTCCTGCTGGCGTTTCCCGGGTTCCGGTCT CCACGCTTGTCGCTTCGGCACAAGCCTCGGGCGGGCGCGTGACCCGTCTTTTCCTTCCCGCCCGCCAGGATGGACCGGCC TTTGCGCAGCTTGCCGAGGGGGACGGCGCGACCCGCTACGCCGTGCTCGATCCCAACTCAGGCCGGGTGATGCGCGAAGG AGGCTTGCTGGCGTTTCCGGTCGAAGCCGCGCTGCAATGGCATTACCGCCTGATGGATGGAGCCACGGGCCTTGCCATCG TCGCCTTGAACGGACTGGCTCTGGTCGTCCTCGCATCGAGCGGTCTCGCCTTCTGGTGGCCGGCAGGCGGACGCTGGAGG AAGTCTCTTTCCGTGAACGCGCGCATGCCCGCGCGGGTCCGTCTGCGGCAATGGCATCGCAGCTTTGGCGTGGTTGCCTC GGCCGTCATTCTGATGAGCGCGGCGACCGGCATTCTCCTTTCGGCGCCCGACGTCTTCGCAGGGGCTGTCGTGCCTTCGC GGCAGGTGCCGCCGCCCCGGCCGCCGGCGCAGATCGATGCTGCCGTGGGCCTTGCACGCTCCGCGTTTCCCCGCAGCGAG TTGCGCGACATCCGCTTCCCGTTGGCCGACCGCATCGACGTCAATCTGAACGCTCCGGAGCGCAATCCCCGCGCCGTTCA TGTCGTGACCGTCGCGGTTTCTCAGCCGAAAGTGCTGAAGGCGGTGCCTGCAAATGAAAGCGCTGCGCTGTGGATGACCG TGCTGCCGCTTCACACGGGCGAAGGCTTCGGTCCGCTGGGGCGCTGGTTCGTCCTTGTCGAGGCGCTCGTGCTGGCGGTT CTTTCCATCACCGGCCCCGTCATGTGGTGGCAGGCAAGAAGGCTGCGCAAATGA
Upstream 100 bases:
>100_bases GCGCCGCGCGCGTTCAATGTCCGGGCGACCTTCTCGTTCTGACTTGATACCTCATGGGGCTACCGCTCGTCGGTAGCCCC AGTTTCCTTGGGCAGGGACC
Downstream 100 bases:
>100_bases CCATGCTCTATCACGGCCCCGAAGCGCGCGGCGCGATCTGGGCCGATATCTTTGCCCGCAGGCTGCCGGACGTCCCGTTC CGCCGCTGGAGCGAGGATGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 337; Mature: 337
Protein sequence:
>337_residues MRRNGFLAWHRRLALIFAPLLLLQALTGAVLVFHDDLVALIDPAPAGVSRVPVSTLVASAQASGGRVTRLFLPARQDGPA FAQLAEGDGATRYAVLDPNSGRVMREGGLLAFPVEAALQWHYRLMDGATGLAIVALNGLALVVLASSGLAFWWPAGGRWR KSLSVNARMPARVRLRQWHRSFGVVASAVILMSAATGILLSAPDVFAGAVVPSRQVPPPRPPAQIDAAVGLARSAFPRSE LRDIRFPLADRIDVNLNAPERNPRAVHVVTVAVSQPKVLKAVPANESAALWMTVLPLHTGEGFGPLGRWFVLVEALVLAV LSITGPVMWWQARRLRK
Sequences:
>Translated_337_residues MRRNGFLAWHRRLALIFAPLLLLQALTGAVLVFHDDLVALIDPAPAGVSRVPVSTLVASAQASGGRVTRLFLPARQDGPA FAQLAEGDGATRYAVLDPNSGRVMREGGLLAFPVEAALQWHYRLMDGATGLAIVALNGLALVVLASSGLAFWWPAGGRWR KSLSVNARMPARVRLRQWHRSFGVVASAVILMSAATGILLSAPDVFAGAVVPSRQVPPPRPPAQIDAAVGLARSAFPRSE LRDIRFPLADRIDVNLNAPERNPRAVHVVTVAVSQPKVLKAVPANESAALWMTVLPLHTGEGFGPLGRWFVLVEALVLAV LSITGPVMWWQARRLRK >Mature_337_residues MRRNGFLAWHRRLALIFAPLLLLQALTGAVLVFHDDLVALIDPAPAGVSRVPVSTLVASAQASGGRVTRLFLPARQDGPA FAQLAEGDGATRYAVLDPNSGRVMREGGLLAFPVEAALQWHYRLMDGATGLAIVALNGLALVVLASSGLAFWWPAGGRWR KSLSVNARMPARVRLRQWHRSFGVVASAVILMSAATGILLSAPDVFAGAVVPSRQVPPPRPPAQIDAAVGLARSAFPRSE LRDIRFPLADRIDVNLNAPERNPRAVHVVTVAVSQPKVLKAVPANESAALWMTVLPLHTGEGFGPLGRWFVLVEALVLAV LSITGPVMWWQARRLRK
Specific function: Unknown
COG id: COG3182
COG function: function code S; Uncharacterized iron-regulated membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36228; Mature: 36228
Theoretical pI: Translated: 12.11; Mature: 12.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRNGFLAWHRRLALIFAPLLLLQALTGAVLVFHDDLVALIDPAPAGVSRVPVSTLVASA CCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCEEEEECCCCCCCCCCCHHHHHHHH QASGGRVTRLFLPARQDGPAFAQLAEGDGATRYAVLDPNSGRVMREGGLLAFPVEAALQW CCCCCEEEEEEEECCCCCCHHHEECCCCCCEEEEEECCCCCCEEECCCEEEEEHHHHHHH HYRLMDGATGLAIVALNGLALVVLASSGLAFWWPAGGRWRKSLSVNARMPARVRLRQWHR HHHHHCCCCCEEEEEECCEEEEEEECCCCEEEECCCCCEEEEEEECCCCCHHHHHHHHHH SFGVVASAVILMSAATGILLSAPDVFAGAVVPSRQVPPPRPPAQIDAAVGLARSAFPRSE HHHHHHHHHHHHHHHCCEEEECCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHH LRDIRFPLADRIDVNLNAPERNPRAVHVVTVAVSQPKVLKAVPANESAALWMTVLPLHTG HHHCCCCCCCCEEEEECCCCCCCCEEEEEEEEECCCCEEEECCCCCCCEEEEEEEEEECC EGFGPLGRWFVLVEALVLAVLSITGPVMWWQARRLRK CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC >Mature Secondary Structure MRRNGFLAWHRRLALIFAPLLLLQALTGAVLVFHDDLVALIDPAPAGVSRVPVSTLVASA CCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCEEEEECCCCCCCCCCCHHHHHHHH QASGGRVTRLFLPARQDGPAFAQLAEGDGATRYAVLDPNSGRVMREGGLLAFPVEAALQW CCCCCEEEEEEEECCCCCCHHHEECCCCCCEEEEEECCCCCCEEECCCEEEEEHHHHHHH HYRLMDGATGLAIVALNGLALVVLASSGLAFWWPAGGRWRKSLSVNARMPARVRLRQWHR HHHHHCCCCCEEEEEECCEEEEEEECCCCEEEECCCCCEEEEEEECCCCCHHHHHHHHHH SFGVVASAVILMSAATGILLSAPDVFAGAVVPSRQVPPPRPPAQIDAAVGLARSAFPRSE HHHHHHHHHHHHHHHCCEEEECCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHH LRDIRFPLADRIDVNLNAPERNPRAVHVVTVAVSQPKVLKAVPANESAALWMTVLPLHTG HHHCCCCCCCCEEEEECCCCCCCCEEEEEEEEECCCCEEEECCCCCCCEEEEEEEEEECC EGFGPLGRWFVLVEALVLAVLSITGPVMWWQARRLRK CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA