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The map label for this gene is yagH [H]

Identifier: 87200926

GI number: 87200926

Start: 3131492

End: 3133135

Strand: Reverse

Name: yagH [H]

Synonym: Saro_2914

Alternate gene names: 87200926

Gene position: 3133135-3131492 (Counterclockwise)

Preceding gene: 87200927

Following gene: 87200922

Centisome position: 87.97

GC content: 61.37

Gene sequence:

>1644_bases
TTGGAATCTCGCAGAACAGCCATGAAGCTTGCCGTCGCGGGGGCTTTGGGGATCAGCGGCTCGGGTTTGGCTGCAAACGC
AGCGAAGAAGGACGACGCCAAATTCAAACCAGCCGCAGACCGCGATGGTCCGCGCTGGCGCACGGGCATCGAAGGGCAGC
GCATTGCGGATCTTGGCGACGGTCGGTTCCTCAATCCGGTGCTTTCCGGCGACTACCCGGATCCTTCCGTCCTGAAGGAC
GGCGACGATTACTACATGACGCATTCCTCCTTCGATTCCGCGCCCGGTTTGCTGATCTGGCATTCGCGTGATCTCGTGAA
CTGGCGTCCACTCGGTCCAGCCTTGGCCAAACCGCTGGGCACGGTCTTCGCGGTCGATATTGCAAAGCACGACGGTCGTT
ACTTCATCTACATACCTTTCATGAAGGCACCGTGGTCGACCGATTTGCCGAGCTTCGCGAACACATTCGTCATTCACGCG
CCTTCCATGGAGGGACCGTGGAGCGATCCGATCGATCTCAAGGTTGGAGGTCTGATCGATCCCGGCCATGTGGTCGGGGA
GGACGGGCATCGTTATCTTTTCTTCAACGATGGCAAGCGTGTGCGCCTGACTGCGGATGGTCTTGCCACCGACGGGCCTG
TCGAGACGGCCTATCAGGCTTGGCGCTATCCCGACGACTGGATCACCGAAGCCTACTCGCCCGAGGGACCCAAGCTGTTC
CGCCGGGGAGATTACTTCTACCTCGTCAACGCGGTTGGCGGGACAAGCGGCCCTGCGACGGGACACATGATCGTTGCCGC
GCGGTCGCGCTCGATCCACGGGCCTTGGGAAAACTGCCCTCACAACCCGATCCAGCGCACGCATTCCCGGCAGGAAATGT
GGTGGTCGCGGGGGCATGCGACGTGTGTCGAAGGACCGGGCGGGCAGTGGTACATGGTCTACCACGGCTACGAGAACGGT
TATCACACGCTCGGACGGCAGACTCTCGTCGAGCCGATCGAGTGGACGCCAGACGGCTGGTTCCGGGCAACCGGCGGGGA
TCTGTCGGAACCGCTGCGCAAACCGCGCGGACCGGCGCAGCCTCATGGCATGGCGCATTCGGATTCCTTCCACACGGACC
GCTTGGGCACGTTGTGGAATCTTTATGGAAGCGCACCGGCGGAAACCGCGCGAATTGCCATTGGTGATGGTGCGCTTACG
CTGAAGGCAAAGGGCAAGGGCCCGTCCGACGGGGTGGTTCTTACCCAGCAAGTGGGCGACAGATCCTACGAAGTCAGTGT
CGAACTCGAGCTGACCGACAAGACGTCGGGCGGACTTCTGCTGTTTTTCGATGACCGGCTGTTCCTCGGCATGGGCATCG
ACGGACACCGGATGACGACCTGGAGAGGTGGCAAGGCATCATACTGGCCGGAGCCTGCCCCCCCTGCGCGGCGCATTTTC
ATGCGCATCACCAACCAGGAGCAGGTCGTCACCTTCTACTACAGCCTGGATGGCAAGAACTGGACCCGGCACGGCGTTCG
CTCGGAGGTAACCGGCTATAATGCCAACACGGTTGATAACCTTCTGAGCCTGCGTCCGGCCCTGTATGCTGCCGGCGAGG
GTGAAGTCCTGTTCCGAAACTTCACCTATCGCGCACTGGCGTAA

Upstream 100 bases:

>100_bases
GGTTTGCAGCCCTGCGCCCGCCGGGATTTGATTTTCACGGTTCTCCTTGATCTGGAGCGCGATCTTCAATTAGAATAGAA
AATCTAAAAAGGAGAGGGCG

Downstream 100 bases:

>100_bases
GCACCGGGCGGGCTCAAGGATAGCTCACCGTCGTCGCCACCTTGGGCAACGGGATGAATTCCTCCTCGTCGCCCGGGACT
TTCGGGAAGCGGCCTTCCTG

Product: glycoside hydrolase family protein

Products: NA

Alternate protein names: 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase [H]

Number of amino acids: Translated: 547; Mature: 547

Protein sequence:

>547_residues
MESRRTAMKLAVAGALGISGSGLAANAAKKDDAKFKPAADRDGPRWRTGIEGQRIADLGDGRFLNPVLSGDYPDPSVLKD
GDDYYMTHSSFDSAPGLLIWHSRDLVNWRPLGPALAKPLGTVFAVDIAKHDGRYFIYIPFMKAPWSTDLPSFANTFVIHA
PSMEGPWSDPIDLKVGGLIDPGHVVGEDGHRYLFFNDGKRVRLTADGLATDGPVETAYQAWRYPDDWITEAYSPEGPKLF
RRGDYFYLVNAVGGTSGPATGHMIVAARSRSIHGPWENCPHNPIQRTHSRQEMWWSRGHATCVEGPGGQWYMVYHGYENG
YHTLGRQTLVEPIEWTPDGWFRATGGDLSEPLRKPRGPAQPHGMAHSDSFHTDRLGTLWNLYGSAPAETARIAIGDGALT
LKAKGKGPSDGVVLTQQVGDRSYEVSVELELTDKTSGGLLLFFDDRLFLGMGIDGHRMTTWRGGKASYWPEPAPPARRIF
MRITNQEQVVTFYYSLDGKNWTRHGVRSEVTGYNANTVDNLLSLRPALYAAGEGEVLFRNFTYRALA

Sequences:

>Translated_547_residues
MESRRTAMKLAVAGALGISGSGLAANAAKKDDAKFKPAADRDGPRWRTGIEGQRIADLGDGRFLNPVLSGDYPDPSVLKD
GDDYYMTHSSFDSAPGLLIWHSRDLVNWRPLGPALAKPLGTVFAVDIAKHDGRYFIYIPFMKAPWSTDLPSFANTFVIHA
PSMEGPWSDPIDLKVGGLIDPGHVVGEDGHRYLFFNDGKRVRLTADGLATDGPVETAYQAWRYPDDWITEAYSPEGPKLF
RRGDYFYLVNAVGGTSGPATGHMIVAARSRSIHGPWENCPHNPIQRTHSRQEMWWSRGHATCVEGPGGQWYMVYHGYENG
YHTLGRQTLVEPIEWTPDGWFRATGGDLSEPLRKPRGPAQPHGMAHSDSFHTDRLGTLWNLYGSAPAETARIAIGDGALT
LKAKGKGPSDGVVLTQQVGDRSYEVSVELELTDKTSGGLLLFFDDRLFLGMGIDGHRMTTWRGGKASYWPEPAPPARRIF
MRITNQEQVVTFYYSLDGKNWTRHGVRSEVTGYNANTVDNLLSLRPALYAAGEGEVLFRNFTYRALA
>Mature_547_residues
MESRRTAMKLAVAGALGISGSGLAANAAKKDDAKFKPAADRDGPRWRTGIEGQRIADLGDGRFLNPVLSGDYPDPSVLKD
GDDYYMTHSSFDSAPGLLIWHSRDLVNWRPLGPALAKPLGTVFAVDIAKHDGRYFIYIPFMKAPWSTDLPSFANTFVIHA
PSMEGPWSDPIDLKVGGLIDPGHVVGEDGHRYLFFNDGKRVRLTADGLATDGPVETAYQAWRYPDDWITEAYSPEGPKLF
RRGDYFYLVNAVGGTSGPATGHMIVAARSRSIHGPWENCPHNPIQRTHSRQEMWWSRGHATCVEGPGGQWYMVYHGYENG
YHTLGRQTLVEPIEWTPDGWFRATGGDLSEPLRKPRGPAQPHGMAHSDSFHTDRLGTLWNLYGSAPAETARIAIGDGALT
LKAKGKGPSDGVVLTQQVGDRSYEVSVELELTDKTSGGLLLFFDDRLFLGMGIDGHRMTTWRGGKASYWPEPAPPARRIF
MRITNQEQVVTFYYSLDGKNWTRHGVRSEVTGYNANTVDNLLSLRPALYAAGEGEVLFRNFTYRALA

Specific function: Unknown

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

Organism=Escherichia coli, GI1786467, Length=511, Percent_Identity=26.2230919765166, Blast_Score=133, Evalue=3e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008985
- InterPro:   IPR013320
- InterPro:   IPR009784
- InterPro:   IPR006710 [H]

Pfam domain/function: PF07081 DUF1349; PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.37 [H]

Molecular weight: Translated: 60459; Mature: 60459

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESRRTAMKLAVAGALGISGSGLAANAAKKDDAKFKPAADRDGPRWRTGIEGQRIADLGD
CCCHHHEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
GRFLNPVLSGDYPDPSVLKDGDDYYMTHSSFDSAPGLLIWHSRDLVNWRPLGPALAKPLG
CCEECHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCHHHHHHCC
TVFAVDIAKHDGRYFIYIPFMKAPWSTDLPSFANTFVIHAPSMEGPWSDPIDLKVGGLID
EEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEECCCCC
PGHVVGEDGHRYLFFNDGKRVRLTADGLATDGPVETAYQAWRYPDDWITEAYSPEGPKLF
CCCEECCCCCEEEEECCCCEEEEEECCCCCCCCHHHHHHHHCCCHHHHHHCCCCCCCCEE
RRGDYFYLVNAVGGTSGPATGHMIVAARSRSIHGPWENCPHNPIQRTHSRQEMWWSRGHA
ECCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCCHHCCCCCHHHHHCCHHHHHHHCCCE
TCVEGPGGQWYMVYHGYENGYHTLGRQTLVEPIEWTPDGWFRATGGDLSEPLRKPRGPAQ
EEEECCCCCEEEEEECCCCCHHHHCHHHHCCCCEECCCCCEEECCCCHHHHHHCCCCCCC
PHGMAHSDSFHTDRLGTLWNLYGSAPAETARIAIGDGALTLKAKGKGPSDGVVLTQQVGD
CCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCEEEEEECCCCCCCCEEEEEECCC
RSYEVSVELELTDKTSGGLLLFFDDRLFLGMGIDGHRMTTWRGGKASYWPEPAPPARRIF
CEEEEEEEEEEECCCCCCEEEEEECEEEEEECCCCCEEEEEECCCCCCCCCCCCHHHEEE
MRITNQEQVVTFYYSLDGKNWTRHGVRSEVTGYNANTVDNLLSLRPALYAAGEGEVLFRN
EEECCCCEEEEEEEEECCCCCHHCCCCHHCCCCCCHHHHHHHHHCHHEEECCCCCEEEEE
FTYRALA
EEEEECC
>Mature Secondary Structure
MESRRTAMKLAVAGALGISGSGLAANAAKKDDAKFKPAADRDGPRWRTGIEGQRIADLGD
CCCHHHEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
GRFLNPVLSGDYPDPSVLKDGDDYYMTHSSFDSAPGLLIWHSRDLVNWRPLGPALAKPLG
CCEECHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCHHHHHHCC
TVFAVDIAKHDGRYFIYIPFMKAPWSTDLPSFANTFVIHAPSMEGPWSDPIDLKVGGLID
EEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEECCCCC
PGHVVGEDGHRYLFFNDGKRVRLTADGLATDGPVETAYQAWRYPDDWITEAYSPEGPKLF
CCCEECCCCCEEEEECCCCEEEEEECCCCCCCCHHHHHHHHCCCHHHHHHCCCCCCCCEE
RRGDYFYLVNAVGGTSGPATGHMIVAARSRSIHGPWENCPHNPIQRTHSRQEMWWSRGHA
ECCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCCHHCCCCCHHHHHCCHHHHHHHCCCE
TCVEGPGGQWYMVYHGYENGYHTLGRQTLVEPIEWTPDGWFRATGGDLSEPLRKPRGPAQ
EEEECCCCCEEEEEECCCCCHHHHCHHHHCCCCEECCCCCEEECCCCHHHHHHCCCCCCC
PHGMAHSDSFHTDRLGTLWNLYGSAPAETARIAIGDGALTLKAKGKGPSDGVVLTQQVGD
CCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCEEEEEECCCCCCCCEEEEEECCC
RSYEVSVELELTDKTSGGLLLFFDDRLFLGMGIDGHRMTTWRGGKASYWPEPAPPARRIF
CEEEEEEEEEEECCCCCCEEEEEECEEEEEECCCCCEEEEEECCCCCCCCCCCCHHHEEE
MRITNQEQVVTFYYSLDGKNWTRHGVRSEVTGYNANTVDNLLSLRPALYAAGEGEVLFRN
EEECCCCEEEEEEEEECCCCCHHCCCCHHCCCCCCHHHHHHHHHCHHEEECCCCCEEEEE
FTYRALA
EEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]