| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is qheDH [H]
Identifier: 87200891
GI number: 87200891
Start: 3100898
End: 3103081
Strand: Reverse
Name: qheDH [H]
Synonym: Saro_2878
Alternate gene names: 87200891
Gene position: 3103081-3100898 (Counterclockwise)
Preceding gene: 87200892
Following gene: 87200890
Centisome position: 87.13
GC content: 67.49
Gene sequence:
>2184_bases ATGATGCGCCAGCTTCTCGCCACCCTGTTCCTTGGCCTCGCCGCCTGCTCCCTCGGCGGCGCGACTGTCCTGACCGAGGG CGCCGGACGCGAGTGGCCCGGCCCGGGCGGTGACGCCGGCAAGACGCATCACTCGCGCCTGACCGCCATCAACGCGGAGA ACGTCGGTCGGCTCGGCCTTGCGTGGCAAGTCGAACTTGGCACCCTGCGCGGGCAGGAGGCGACCCCGGTCGTGGTGGAC GGCGTGCTCTACACCTCGGGCACCACGGGCCGCGCCTATGCGTTCGATGCGGCGACCGGCAAGGAGCTGTGGCGGTTCGA GCCCGAGGTCGACATGCAGGTCAACCGCACGGTCTGCTGCGACATGGTCAACCGTGGCGTCGCGGTGGGGCGCGGCAAGG TCTTCGTCGCCAGTCTCGATGGGTGGATGTACGCACTCGATGCCCGCACCGGCGCGGTCGTCTGGAAGAGCGACTTCATC GAGAACCGAGCCAAGGGCGACAATTCCACCGGCGCTCCCGAAATCGCGGGCGATGTCGTCGTCATCGGCATGGGCGGCGC GGAGTACGACGTGCGCGGCTATGTCACGGCGCTCGATCTCGATACCGGAAAGCTGCGCTGGCGTTGGCACGTGGTGCCCC GCGATCCCAAGCTGGGGCCGCAGGAAACGCCCGAACTCGAAGCCGCGCTGAAGACTTGGGACCCGAACAGCCGCTGGGAC ATCGGCGGCGGTGGCAGCCCGTGGGATGCGATCAACTACGACCCCGAAACCGGCCTGGTCCTTGTCGGCACCGGCAATGG CGGGCCTTACGCCACGTCCAAGCGCTCGCCTGCGGGGGGCGACAACCTCTACCTCGCCAGCCTCGTCGCGCTCGATCCGA AGACCGGGCGGATGAAGTGGCACTACCAGGAAACGCCGGGCGACAACTGGGACTTCACCGCCACCCAGCCGATGATCTTC ACCCGCATGAAGATCGACGGCGAGGACCGGCCAGTCGTGCTCCACGCGCCGAAGAACGGCTATCTCTACATTCTCGACCG GCGCGACGGAAAACTGCTGCGCGCCAATCCCATCGTCCGCACCAACTGGGCCAAGGGCATCGATCCCGGGACCGGCCGCC CGATCCTCGATCCCGCGGCCGCCGACTATACCACCGGTCCCAAGATCGTGTTCCCGGCCACGACCGGCGCACGCAACTGG CACCCCGCCAGCTACGATCCAGCGACCGGGCTCTACATCGGCGCGGTGCTCGACATGGGCAATCTCATCTTCATGACGCC GGGGGCCAAGCCGCTCAAGGCGCGCGGGCTCAACAACGATGCCGCGCTCATCTTCACGCCGGACGTCAAGGAAGCGCTTG CCGCCTTCCCGCCTGAATTCGGCGATGCCGTGCGCAAGTTGCCTGCCTATCAGGAGGCGCTGAAGCAGCCTGCCACCGCG CAGATCCGCGCCATCGATCCGCTAACCGGGAAGACCGTCTGGGCGGCCGATACCGCCGGCTGGCAGGATCGCGGCGGCGT GCTGACCACGTCTTCGGGCCTTACCATCCATGGCGGCGTCACCGGCAAGCTCTTCGTGCGCGATACGAAAACCGGCAAGC TCCTGAAGGAAATAGACACCGGCACTCCGATCATGGCCGCGCCGATGACTTACGAGGTTGGCGGCGTGCAGTACATCGCC GTCATGGCCGGGTGGGGCGGGGGCGGCTATCCCTTCGTCCCGCGCTATTCCGCAGCCTATACGCGCGGCAACATGAACCG GCTGCTGGTGTTCAAGGTGGGGGGCGGCAAGGTGCCGTTGCCGGACCTGCTCCCGCCGCTGGAAGTGGCGCCGGAACCGC CGGCACAGGCCGCGGGCGTGACGGCGGCGACCATCGCGCGCGGGCAGGGCCTGTTCTTCGGCAATTGCGCGATCTGTCAC GCCAACCAGCCCCGCTCGATCACGCCGGACTTGCGCCGGATGCAGCCTGCCACGCACGAGATGTTCCGCGAGATCGTGCT CGAAGGCCTGCTCACGCCCAATGGCATGCCGCGCTGGAACGACATCCTCTCGACCGACGATGCCGACGCGATCCACGCCT ACCTGATCGACCTCCAGGGCAAGACGCGCGCGGACGAACTGGCCAAGCAGAAGGCCGGCAAGCCGCTCGATGGGCCTAGT CTGACGATCCTGAGCAATTACTGA
Upstream 100 bases:
>100_bases ACATCTCCGAACTGTTCAAGATCGACCACGGCATGATCGAACAGATCGAGGCGAACTTCATAACCGTGCCCTATCGCATG CCGAGCCCCTGGGATTTGCT
Downstream 100 bases:
>100_bases TCTGGCAACGCCGACCCTCATCCGGACGGGGCGGGGAGCAATTAGAAAGGCATTCGATGGACTTCTCCACGCTCGACAAT CCGCGCCTTGAATTCGCCTT
Product: Pyrrolo-quinoline quinone
Products: NA
Alternate protein names: QH-EDH1; Quinohaemoprotein ethanol dehydrogenase type I [H]
Number of amino acids: Translated: 727; Mature: 727
Protein sequence:
>727_residues MMRQLLATLFLGLAACSLGGATVLTEGAGREWPGPGGDAGKTHHSRLTAINAENVGRLGLAWQVELGTLRGQEATPVVVD GVLYTSGTTGRAYAFDAATGKELWRFEPEVDMQVNRTVCCDMVNRGVAVGRGKVFVASLDGWMYALDARTGAVVWKSDFI ENRAKGDNSTGAPEIAGDVVVIGMGGAEYDVRGYVTALDLDTGKLRWRWHVVPRDPKLGPQETPELEAALKTWDPNSRWD IGGGGSPWDAINYDPETGLVLVGTGNGGPYATSKRSPAGGDNLYLASLVALDPKTGRMKWHYQETPGDNWDFTATQPMIF TRMKIDGEDRPVVLHAPKNGYLYILDRRDGKLLRANPIVRTNWAKGIDPGTGRPILDPAAADYTTGPKIVFPATTGARNW HPASYDPATGLYIGAVLDMGNLIFMTPGAKPLKARGLNNDAALIFTPDVKEALAAFPPEFGDAVRKLPAYQEALKQPATA QIRAIDPLTGKTVWAADTAGWQDRGGVLTTSSGLTIHGGVTGKLFVRDTKTGKLLKEIDTGTPIMAAPMTYEVGGVQYIA VMAGWGGGGYPFVPRYSAAYTRGNMNRLLVFKVGGGKVPLPDLLPPLEVAPEPPAQAAGVTAATIARGQGLFFGNCAICH ANQPRSITPDLRRMQPATHEMFREIVLEGLLTPNGMPRWNDILSTDDADAIHAYLIDLQGKTRADELAKQKAGKPLDGPS LTILSNY
Sequences:
>Translated_727_residues MMRQLLATLFLGLAACSLGGATVLTEGAGREWPGPGGDAGKTHHSRLTAINAENVGRLGLAWQVELGTLRGQEATPVVVD GVLYTSGTTGRAYAFDAATGKELWRFEPEVDMQVNRTVCCDMVNRGVAVGRGKVFVASLDGWMYALDARTGAVVWKSDFI ENRAKGDNSTGAPEIAGDVVVIGMGGAEYDVRGYVTALDLDTGKLRWRWHVVPRDPKLGPQETPELEAALKTWDPNSRWD IGGGGSPWDAINYDPETGLVLVGTGNGGPYATSKRSPAGGDNLYLASLVALDPKTGRMKWHYQETPGDNWDFTATQPMIF TRMKIDGEDRPVVLHAPKNGYLYILDRRDGKLLRANPIVRTNWAKGIDPGTGRPILDPAAADYTTGPKIVFPATTGARNW HPASYDPATGLYIGAVLDMGNLIFMTPGAKPLKARGLNNDAALIFTPDVKEALAAFPPEFGDAVRKLPAYQEALKQPATA QIRAIDPLTGKTVWAADTAGWQDRGGVLTTSSGLTIHGGVTGKLFVRDTKTGKLLKEIDTGTPIMAAPMTYEVGGVQYIA VMAGWGGGGYPFVPRYSAAYTRGNMNRLLVFKVGGGKVPLPDLLPPLEVAPEPPAQAAGVTAATIARGQGLFFGNCAICH ANQPRSITPDLRRMQPATHEMFREIVLEGLLTPNGMPRWNDILSTDDADAIHAYLIDLQGKTRADELAKQKAGKPLDGPS LTILSNY >Mature_727_residues MMRQLLATLFLGLAACSLGGATVLTEGAGREWPGPGGDAGKTHHSRLTAINAENVGRLGLAWQVELGTLRGQEATPVVVD GVLYTSGTTGRAYAFDAATGKELWRFEPEVDMQVNRTVCCDMVNRGVAVGRGKVFVASLDGWMYALDARTGAVVWKSDFI ENRAKGDNSTGAPEIAGDVVVIGMGGAEYDVRGYVTALDLDTGKLRWRWHVVPRDPKLGPQETPELEAALKTWDPNSRWD IGGGGSPWDAINYDPETGLVLVGTGNGGPYATSKRSPAGGDNLYLASLVALDPKTGRMKWHYQETPGDNWDFTATQPMIF TRMKIDGEDRPVVLHAPKNGYLYILDRRDGKLLRANPIVRTNWAKGIDPGTGRPILDPAAADYTTGPKIVFPATTGARNW HPASYDPATGLYIGAVLDMGNLIFMTPGAKPLKARGLNNDAALIFTPDVKEALAAFPPEFGDAVRKLPAYQEALKQPATA QIRAIDPLTGKTVWAADTAGWQDRGGVLTTSSGLTIHGGVTGKLFVRDTKTGKLLKEIDTGTPIMAAPMTYEVGGVQYIA VMAGWGGGGYPFVPRYSAAYTRGNMNRLLVFKVGGGKVPLPDLLPPLEVAPEPPAQAAGVTAATIARGQGLFFGNCAICH ANQPRSITPDLRRMQPATHEMFREIVLEGLLTPNGMPRWNDILSTDDADAIHAYLIDLQGKTRADELAKQKAGKPLDGPS LTILSNY
Specific function: Catalyzes the dye-linked oxidation of primary alcohols to the corresponding aldehydes and the (subsequent) oxidation of the aldehydes to carboxylic acids [H]
COG id: COG4993
COG function: function code G; Glucose dehydrogenase
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 cytochrome c domain [H]
Homologues:
Organism=Escherichia coli, GI1786316, Length=653, Percent_Identity=25.114854517611, Blast_Score=125, Evalue=7e-30,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009056 - InterPro: IPR019556 - InterPro: IPR019551 - InterPro: IPR018391 - InterPro: IPR017512 - InterPro: IPR002372 - InterPro: IPR011047 - InterPro: IPR001479 [H]
Pfam domain/function: PF01011 PQQ; PF10535 PQQ_C; PF10527 PQQ_N [H]
EC number: =1.1.98.1 [H]
Molecular weight: Translated: 77896; Mature: 77896
Theoretical pI: Translated: 7.06; Mature: 7.06
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51007 CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRQLLATLFLGLAACSLGGATVLTEGAGREWPGPGGDAGKTHHSRLTAINAENVGRLGL CHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEE AWQVELGTLRGQEATPVVVDGVLYTSGTTGRAYAFDAATGKELWRFEPEVDMQVNRTVCC EEEEEEEECCCCCCCCEEEEEEEEECCCCCCEEEEECCCCCHHEEECCCCCEEECCHHHH DMVNRGVAVGRGKVFVASLDGWMYALDARTGAVVWKSDFIENRAKGDNSTGAPEIAGDVV HHHHCCEEECCCEEEEEECCCEEEEEECCCCEEEEEHHHHHHHCCCCCCCCCCCCCCCEE VIGMGGAEYDVRGYVTALDLDTGKLRWRWHVVPRDPKLGPQETPELEAALKTWDPNSRWD EEECCCCCEECEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCEE IGGGGSPWDAINYDPETGLVLVGTGNGGPYATSKRSPAGGDNLYLASLVALDPKTGRMKW CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEE HYQETPGDNWDFTATQPMIFTRMKIDGEDRPVVLHAPKNGYLYILDRRDGKLLRANPIVR EEECCCCCCCCEECCCCEEEEEEEECCCCCCEEEECCCCCEEEEEECCCCCEEECCCEEE TNWAKGIDPGTGRPILDPAAADYTTGPKIVFPATTGARNWHPASYDPATGLYIGAVLDMG ECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCC NLIFMTPGAKPLKARGLNNDAALIFTPDVKEALAAFPPEFGDAVRKLPAYQEALKQPATA CEEEECCCCCCCEECCCCCCEEEEECCCHHHHHHHCCCHHHHHHHHCHHHHHHHCCCCCE QIRAIDPLTGKTVWAADTAGWQDRGGVLTTSSGLTIHGGVTGKLFVRDTKTGKLLKEIDT EEEEECCCCCCEEEEECCCCCCCCCCEEEECCCEEEECCCEEEEEEEECCCCHHHHHHCC GTPIMAAPMTYEVGGVQYIAVMAGWGGGGYPFVPRYSAAYTRGNMNRLLVFKVGGGKVPL CCCEEECCEEEECCCEEEEEEEEECCCCCCCCCCCCCCEEECCCCCEEEEEEECCCCCCC PDLLPPLEVAPEPPAQAAGVTAATIARGQGLFFGNCAICHANQPRSITPDLRRMQPATHE HHCCCCCCCCCCCCHHHCCCEEEEHCCCCCEEEECEEEEECCCCCCCCCHHHHCCHHHHH MFREIVLEGLLTPNGMPRWNDILSTDDADAIHAYLIDLQGKTRADELAKQKAGKPLDGPS HHHHHHHHHHCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCHHHHHHHHCCCCCCCCC LTILSNY EEEEECC >Mature Secondary Structure MMRQLLATLFLGLAACSLGGATVLTEGAGREWPGPGGDAGKTHHSRLTAINAENVGRLGL CHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEE AWQVELGTLRGQEATPVVVDGVLYTSGTTGRAYAFDAATGKELWRFEPEVDMQVNRTVCC EEEEEEEECCCCCCCCEEEEEEEEECCCCCCEEEEECCCCCHHEEECCCCCEEECCHHHH DMVNRGVAVGRGKVFVASLDGWMYALDARTGAVVWKSDFIENRAKGDNSTGAPEIAGDVV HHHHCCEEECCCEEEEEECCCEEEEEECCCCEEEEEHHHHHHHCCCCCCCCCCCCCCCEE VIGMGGAEYDVRGYVTALDLDTGKLRWRWHVVPRDPKLGPQETPELEAALKTWDPNSRWD EEECCCCCEECEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCEE IGGGGSPWDAINYDPETGLVLVGTGNGGPYATSKRSPAGGDNLYLASLVALDPKTGRMKW CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEE HYQETPGDNWDFTATQPMIFTRMKIDGEDRPVVLHAPKNGYLYILDRRDGKLLRANPIVR EEECCCCCCCCEECCCCEEEEEEEECCCCCCEEEECCCCCEEEEEECCCCCEEECCCEEE TNWAKGIDPGTGRPILDPAAADYTTGPKIVFPATTGARNWHPASYDPATGLYIGAVLDMG ECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCC NLIFMTPGAKPLKARGLNNDAALIFTPDVKEALAAFPPEFGDAVRKLPAYQEALKQPATA CEEEECCCCCCCEECCCCCCEEEEECCCHHHHHHHCCCHHHHHHHHCHHHHHHHCCCCCE QIRAIDPLTGKTVWAADTAGWQDRGGVLTTSSGLTIHGGVTGKLFVRDTKTGKLLKEIDT EEEEECCCCCCEEEEECCCCCCCCCCEEEECCCEEEECCCEEEEEEEECCCCHHHHHHCC GTPIMAAPMTYEVGGVQYIAVMAGWGGGGYPFVPRYSAAYTRGNMNRLLVFKVGGGKVPL CCCEEECCEEEECCCEEEEEEEEECCCCCCCCCCCCCCEEECCCCCEEEEEEECCCCCCC PDLLPPLEVAPEPPAQAAGVTAATIARGQGLFFGNCAICHANQPRSITPDLRRMQPATHE HHCCCCCCCCCCCCHHHCCCEEEEHCCCCCEEEECEEEEECCCCCCCCCHHHHCCHHHHH MFREIVLEGLLTPNGMPRWNDILSTDDADAIHAYLIDLQGKTRADELAKQKAGKPLDGPS HHHHHHHHHHCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCHHHHHHHHCCCCCCCCC LTILSNY EEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8654419; 7601151; 3521592; 11679760; 11714714 [H]