| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is lvr [H]
Identifier: 87200879
GI number: 87200879
Start: 3088531
End: 3089280
Strand: Reverse
Name: lvr [H]
Synonym: Saro_2866
Alternate gene names: 87200879
Gene position: 3089280-3088531 (Counterclockwise)
Preceding gene: 87200880
Following gene: 87200878
Centisome position: 86.74
GC content: 68.93
Gene sequence:
>750_bases GTGACAGATCTTTCCGGCAAGCACGTCGTCATCACTGGCGCCTCCACGGGCATCGGCCGCGCCACGGCGACGCGTTGCGT GGCCGCTGGCGCTCGCGTTACCCTGATCGCCCGCCGTGCCGACCTGCTCGAACAGGCCGCCCGTGAACTTGGCGGATCGA CCGCGTTCGCCGCTGCCGACGTTGCCGACAAGGCTGCGCTCAAAGCCGCGCTGGACCATGCCGTTGCCGCAAATGGCCCG ATCGACGGCCTGTTCCTCAACGCCGGGATCGGCGGCATGTTCGCCCCTGTGGAGGACTATGGCGACGAAGCGTTCGATGC GGTTCTCGCCGTCAACCTCAAGTCGGTCTTCTGGGCGATCCAGCATGCACTCCCGGCGATGAAGGAGCGCGGGCAGGGGG CGATCCTGGTTACCGGCAGTCTCGCCAGCGAGCGTGGCCTGCCGATGAACGCGGGCTATGTCGCCAGCAAGCACGCGGTA CTCGGCCTGTCGCGCGCGGTGGCGAACGAGGCGGCGGAAGCAGGCGTGCGCTGCAACTGCATCCTGCCCGGCCTGATCGA GACGCCGATGCTCGATGGCCTCCCGCCCGAAGCCGCCTCGCAGATGGCCCGCGCCGTGCCGCAGGGCCGCACCGGTTCGT CCGACGAAGTGGCGCAGGTCGCTGCCTTCCTTCTTTCCGACGCCGCCAGCCACGTCACCGCGCAAGCTCTCGCGGTCGAT GGCGGCATGCTCGGCACCATGCGAGTCTGA
Upstream 100 bases:
>100_bases AAGTCGATGCGCGCAAACTGATGGAACGGCAGTGGTCCCCCGAGGGCCACGACAGCAAGGAGGCCCGTGTCTGGGCCGAA TTCATCGCACGGAGCGCAAA
Downstream 100 bases:
>100_bases ACCGATGGCCTTGAAATACTACCACGCCGAACCGCTGGCCAACTCTCTCAAGTCGATGGTCCCGCTCAAGGAAAAGGGCC TCGCCTACGAGAGCATCTAC
Product: short-chain dehydrogenase/reductase SDR
Products: (3R)-hydroxyacyl-[acyl-carrier-protein]; NADP; NADPH; Proton; beta-ketoacyl-ACP [C]
Alternate protein names: (6R)-2,2,6-trimethyl-1,4-cyclohexanedione reductase [H]
Number of amino acids: Translated: 249; Mature: 248
Protein sequence:
>249_residues MTDLSGKHVVITGASTGIGRATATRCVAAGARVTLIARRADLLEQAARELGGSTAFAAADVADKAALKAALDHAVAANGP IDGLFLNAGIGGMFAPVEDYGDEAFDAVLAVNLKSVFWAIQHALPAMKERGQGAILVTGSLASERGLPMNAGYVASKHAV LGLSRAVANEAAEAGVRCNCILPGLIETPMLDGLPPEAASQMARAVPQGRTGSSDEVAQVAAFLLSDAASHVTAQALAVD GGMLGTMRV
Sequences:
>Translated_249_residues MTDLSGKHVVITGASTGIGRATATRCVAAGARVTLIARRADLLEQAARELGGSTAFAAADVADKAALKAALDHAVAANGP IDGLFLNAGIGGMFAPVEDYGDEAFDAVLAVNLKSVFWAIQHALPAMKERGQGAILVTGSLASERGLPMNAGYVASKHAV LGLSRAVANEAAEAGVRCNCILPGLIETPMLDGLPPEAASQMARAVPQGRTGSSDEVAQVAAFLLSDAASHVTAQALAVD GGMLGTMRV >Mature_248_residues TDLSGKHVVITGASTGIGRATATRCVAAGARVTLIARRADLLEQAARELGGSTAFAAADVADKAALKAALDHAVAANGPI DGLFLNAGIGGMFAPVEDYGDEAFDAVLAVNLKSVFWAIQHALPAMKERGQGAILVTGSLASERGLPMNAGYVASKHAVL GLSRAVANEAAEAGVRCNCILPGLIETPMLDGLPPEAASQMARAVPQGRTGSSDEVAQVAAFLLSDAASHVTAQALAVDG GMLGTMRV
Specific function: Catalyzes the regio- and stereoselective reversible NAD- dependent reduction of (6R)-2,2,6-trimethyl-1,4-cyclohexanedione (levodione) to (4R,6R)-4-hydroxy-2,2,6-trimethylcyclohexanone (actinol) [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=247, Percent_Identity=30.7692307692308, Blast_Score=112, Evalue=2e-25, Organism=Homo sapiens, GI15277342, Length=252, Percent_Identity=31.3492063492063, Blast_Score=108, Evalue=4e-24, Organism=Homo sapiens, GI7705925, Length=243, Percent_Identity=31.6872427983539, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI5031737, Length=247, Percent_Identity=31.1740890688259, Blast_Score=99, Evalue=5e-21, Organism=Homo sapiens, GI40254992, Length=235, Percent_Identity=31.063829787234, Blast_Score=99, Evalue=5e-21, Organism=Homo sapiens, GI126723750, Length=247, Percent_Identity=29.9595141700405, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI19923817, Length=252, Percent_Identity=28.968253968254, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI66933014, Length=182, Percent_Identity=30.7692307692308, Blast_Score=95, Evalue=5e-20, Organism=Homo sapiens, GI4503817, Length=254, Percent_Identity=30.3149606299213, Blast_Score=92, Evalue=4e-19, Organism=Homo sapiens, GI33667109, Length=192, Percent_Identity=32.2916666666667, Blast_Score=88, Evalue=8e-18, Organism=Homo sapiens, GI4758504, Length=246, Percent_Identity=31.3008130081301, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI223718074, Length=193, Percent_Identity=36.2694300518135, Blast_Score=85, Evalue=5e-17, Organism=Homo sapiens, GI31542939, Length=207, Percent_Identity=31.4009661835749, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI126723191, Length=184, Percent_Identity=30.4347826086957, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI59889578, Length=222, Percent_Identity=30.6306306306306, Blast_Score=78, Evalue=7e-15, Organism=Homo sapiens, GI20149619, Length=223, Percent_Identity=30.0448430493274, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI7705855, Length=214, Percent_Identity=28.9719626168224, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI142976729, Length=194, Percent_Identity=27.319587628866, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI210032110, Length=191, Percent_Identity=26.7015706806283, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI10190704, Length=249, Percent_Identity=30.1204819277108, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI83715985, Length=246, Percent_Identity=29.6747967479675, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI4503301, Length=225, Percent_Identity=26.2222222222222, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI32455239, Length=192, Percent_Identity=32.2916666666667, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI5031765, Length=192, Percent_Identity=32.2916666666667, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI7706318, Length=199, Percent_Identity=27.1356783919598, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI40807363, Length=229, Percent_Identity=27.5109170305677, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI302344755, Length=108, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI1787335, Length=243, Percent_Identity=33.7448559670782, Blast_Score=126, Evalue=1e-30, Organism=Escherichia coli, GI87082100, Length=259, Percent_Identity=34.3629343629344, Blast_Score=121, Evalue=5e-29, Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=33.7349397590361, Blast_Score=114, Evalue=8e-27, Organism=Escherichia coli, GI1786812, Length=250, Percent_Identity=34.4, Blast_Score=101, Evalue=5e-23, Organism=Escherichia coli, GI1789378, Length=246, Percent_Identity=29.2682926829268, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI2367175, Length=246, Percent_Identity=33.3333333333333, Blast_Score=98, Evalue=4e-22, Organism=Escherichia coli, GI1789208, Length=246, Percent_Identity=32.520325203252, Blast_Score=97, Evalue=8e-22, Organism=Escherichia coli, GI1787905, Length=246, Percent_Identity=34.9593495934959, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI87082160, Length=245, Percent_Identity=28.5714285714286, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI2367365, Length=251, Percent_Identity=33.0677290836653, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1788459, Length=240, Percent_Identity=28.3333333333333, Blast_Score=81, Evalue=5e-17, Organism=Escherichia coli, GI1787526, Length=193, Percent_Identity=30.5699481865285, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1787820, Length=233, Percent_Identity=27.0386266094421, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1789057, Length=254, Percent_Identity=28.3464566929134, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1786701, Length=191, Percent_Identity=28.7958115183246, Blast_Score=68, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17555706, Length=251, Percent_Identity=33.0677290836653, Blast_Score=111, Evalue=4e-25, Organism=Caenorhabditis elegans, GI25147288, Length=248, Percent_Identity=29.8387096774194, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17560676, Length=247, Percent_Identity=28.7449392712551, Blast_Score=103, Evalue=8e-23, Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=30.4, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI115534694, Length=244, Percent_Identity=31.1475409836066, Blast_Score=97, Evalue=6e-21, Organism=Caenorhabditis elegans, GI17559104, Length=267, Percent_Identity=31.0861423220974, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17536651, Length=249, Percent_Identity=28.9156626506024, Blast_Score=94, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17563726, Length=260, Percent_Identity=28.8461538461538, Blast_Score=94, Evalue=8e-20, Organism=Caenorhabditis elegans, GI71994600, Length=246, Percent_Identity=32.1138211382114, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17562910, Length=264, Percent_Identity=29.9242424242424, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI71994604, Length=245, Percent_Identity=30.6122448979592, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17536025, Length=249, Percent_Identity=28.5140562248996, Blast_Score=88, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17544670, Length=266, Percent_Identity=30.0751879699248, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17538182, Length=246, Percent_Identity=28.4552845528455, Blast_Score=87, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17562906, Length=266, Percent_Identity=28.5714285714286, Blast_Score=87, Evalue=6e-18, Organism=Caenorhabditis elegans, GI72000259, Length=261, Percent_Identity=27.5862068965517, Blast_Score=87, Evalue=9e-18, Organism=Caenorhabditis elegans, GI17562990, Length=262, Percent_Identity=27.8625954198473, Blast_Score=87, Evalue=9e-18, Organism=Caenorhabditis elegans, GI17560220, Length=263, Percent_Identity=30.0380228136882, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17562904, Length=261, Percent_Identity=27.2030651340996, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17560150, Length=267, Percent_Identity=28.4644194756554, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17561272, Length=249, Percent_Identity=29.3172690763052, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI193204405, Length=267, Percent_Identity=29.5880149812734, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17531453, Length=274, Percent_Identity=28.4671532846715, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI17564282, Length=200, Percent_Identity=29.5, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI17565030, Length=259, Percent_Identity=29.3436293436293, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17562908, Length=266, Percent_Identity=27.8195488721804, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17538480, Length=263, Percent_Identity=29.277566539924, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI193203115, Length=217, Percent_Identity=27.6497695852535, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17560332, Length=266, Percent_Identity=26.6917293233083, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI193203117, Length=216, Percent_Identity=27.7777777777778, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17551412, Length=260, Percent_Identity=26.5384615384615, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17508895, Length=199, Percent_Identity=28.643216080402, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17532805, Length=148, Percent_Identity=31.7567567567568, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17538486, Length=269, Percent_Identity=28.996282527881, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17568967, Length=223, Percent_Identity=27.3542600896861, Blast_Score=64, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17508651, Length=246, Percent_Identity=26.0162601626016, Blast_Score=64, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=258, Percent_Identity=30.6201550387597, Blast_Score=90, Evalue=3e-19, Organism=Saccharomyces cerevisiae, GI6323882, Length=195, Percent_Identity=29.2307692307692, Blast_Score=71, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6322227, Length=201, Percent_Identity=27.363184079602, Blast_Score=64, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6322226, Length=190, Percent_Identity=25.7894736842105, Blast_Score=64, Evalue=3e-11, Organism=Drosophila melanogaster, GI21355319, Length=248, Percent_Identity=29.8387096774194, Blast_Score=117, Evalue=8e-27, Organism=Drosophila melanogaster, GI24639444, Length=248, Percent_Identity=32.6612903225806, Blast_Score=114, Evalue=7e-26, Organism=Drosophila melanogaster, GI21357041, Length=252, Percent_Identity=33.7301587301587, Blast_Score=107, Evalue=8e-24, Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=36.144578313253, Blast_Score=105, Evalue=2e-23, Organism=Drosophila melanogaster, GI24644339, Length=250, Percent_Identity=33.2, Blast_Score=101, Evalue=6e-22, Organism=Drosophila melanogaster, GI24643142, Length=246, Percent_Identity=29.6747967479675, Blast_Score=96, Evalue=2e-20, Organism=Drosophila melanogaster, GI28571526, Length=252, Percent_Identity=31.3492063492063, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI17737361, Length=249, Percent_Identity=29.3172690763052, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI21358495, Length=199, Percent_Identity=30.1507537688442, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI21356301, Length=208, Percent_Identity=29.8076923076923, Blast_Score=78, Evalue=5e-15, Organism=Drosophila melanogaster, GI116007236, Length=220, Percent_Identity=29.5454545454545, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI281364892, Length=194, Percent_Identity=30.9278350515464, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI24641232, Length=255, Percent_Identity=27.0588235294118, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24584744, Length=198, Percent_Identity=29.2929292929293, Blast_Score=71, Evalue=5e-13, Organism=Drosophila melanogaster, GI28574402, Length=198, Percent_Identity=29.2929292929293, Blast_Score=71, Evalue=5e-13, Organism=Drosophila melanogaster, GI18859837, Length=204, Percent_Identity=30.8823529411765, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI281364494, Length=220, Percent_Identity=28.6363636363636, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24648944, Length=218, Percent_Identity=30.2752293577982, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI24640492, Length=214, Percent_Identity=26.6355140186916, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24584748, Length=191, Percent_Identity=26.1780104712042, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI161076933, Length=191, Percent_Identity=26.1780104712042, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24581726, Length=207, Percent_Identity=25.6038647342995, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI116007238, Length=178, Percent_Identity=29.7752808988764, Blast_Score=65, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.1.1.100 [C]
Molecular weight: Translated: 25141; Mature: 25010
Theoretical pI: Translated: 5.61; Mature: 5.61
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDLSGKHVVITGASTGIGRATATRCVAAGARVTLIARRADLLEQAARELGGSTAFAAAD CCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCCCHHHHHH VADKAALKAALDHAVAANGPIDGLFLNAGIGGMFAPVEDYGDEAFDAVLAVNLKSVFWAI HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHH QHALPAMKERGQGAILVTGSLASERGLPMNAGYVASKHAVLGLSRAVANEAAEAGVRCNC HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEE ILPGLIETPMLDGLPPEAASQMARAVPQGRTGSSDEVAQVAAFLLSDAASHVTAQALAVD EECCHHCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEC GGMLGTMRV CCCEEECCC >Mature Secondary Structure TDLSGKHVVITGASTGIGRATATRCVAAGARVTLIARRADLLEQAARELGGSTAFAAAD CCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCCCHHHHHH VADKAALKAALDHAVAANGPIDGLFLNAGIGGMFAPVEDYGDEAFDAVLAVNLKSVFWAI HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHH QHALPAMKERGQGAILVTGSLASERGLPMNAGYVASKHAVLGLSRAVANEAAEAGVRCNC HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEE ILPGLIETPMLDGLPPEAASQMARAVPQGRTGSSDEVAQVAAFLLSDAASHVTAQALAVD EECCHHCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEC GGMLGTMRV CCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NADPH [C]
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Oxoacyl-[acyl-carrier-protein]; NADPH; D-3-hydroxy-acyl-ACP; NADP [C]
Specific reaction: Oxoacyl-[acyl-carrier-protein] + NADPH = (3R)-hydroxyacyl-[acyl-carrier-protein] + NADP+ D-3-hydroxy-acyl-ACP + NADP = NADPH + Proton + beta-ketoacyl-ACP [C]
General reaction: Redox reaction [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11388460; 10508066 [H]