| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is hmp [H]
Identifier: 87200776
GI number: 87200776
Start: 2982157
End: 2984184
Strand: Direct
Name: hmp [H]
Synonym: Saro_2763
Alternate gene names: 87200776
Gene position: 2982157-2984184 (Clockwise)
Preceding gene: 87200775
Following gene: 87200777
Centisome position: 83.73
GC content: 65.19
Gene sequence:
>2028_bases ATGGACGATACCCAACGCGTGGCCAACAGCCCGATCTGGCATGAAGGCGAACGCGCACTTCAGGCTCATGTCGGCGTTGT CGATCGGATGGGCGAGGTGGGCGCTCGCGTGATCCGCCCCTTCATGCCGGACCAGCACCGCACCTTCTACGCCCAGCTTC CTTTCGTGATCCTCGGCAGCGTCGATGCCGAGGGCGCGGCGTGGGCCACCGTGGTCGAGGGCGAACCCGGCTTCCTCTCA TCGCCGGACCCCAAGAGCCTGGTGCTAGGTGCACTGCCACACGCGGATGATCCGGCGCTGGGCGGTATACACGATGAAGC GGCGCTCGGACTGCTCGGCATCGAACTGCACAACCGCCGGCGCAACCGTGTCAACGGCACCTTGCGCTTCCCATCTGCCG GTGCACCGCTGCTGGAAGTTGGCCAGAGCTTCGGCAACTGCCCCCAATACATCCAGCTTCGCGACGCCACCTTGTCCCGC GCGCCGGCTGCACCGCCGCCCCACCTGGCCGAGGAACTGCCCGCACTGGACGCGGCGGCCCGCGCCATGATCGGCAGTGC CGACACCTTGTTTGTAGCCTCTTATGCCGACAGGCTGGATAGCGGCAGGCAAGTCGACGTGTCCCATCGGGGCGGGAAGG CCGGCTTCGTGCGCGTCGATGCCGAGGGCAAGCTGACCATTCCCGATTTCGCGGGCAACCTGTTCTTCGCCACGCTGGGC AACGTACTGCTCAATGGGCAGGCAGGCCTCGTCTTCATCGATTTCGAAAGCGGGGACCTGCTGCAGATGTCGGGCAAGGC CGAGGTCGTTCTCGATTCACCCGAAATCGCCAGCTTCGCCGGGGCGGAGCGGCTATGGACCTTCGTGCCGCAGCGGATCG TTCGCCGGAAGGGTGCGCTTGCCCTGCGCTGGAGCTTCCGGGATAATGGCTGGTCTCCCAATTCGCTGGCGACAGGCCAA TGGCCCGCAGCTTTGCATTGGCAGCAATTGCGCGTCGAACGCATTGTCGCGGAAAGCGCTAGCATCCGCTCGTTCCATCT GCGTCCTGTGTCGCCGGATCTCGGCTGGCAGCACGAGGCCGGGCAACACCTGCCAATTCGCGTAAGGCTGCCGGGCGAGG ATAGCCCTGCCGTGCGGACCTACACGCTATCGTCCGCGCCATCAGATCCGCTTTACCGCATCAGCGTGAAGCGAGAGGGC AAGGTGTCGGCCTGGTTGCACGAGCAGGTGCGCGAAGGCGATATCATCGAAGCGCGCGCACCGGCGGGCAGCTTCGTCAT CGAGCCCGGAGCACCACGCCTCGCCGTGCTTATCGGTGCCGGGATCGGCATCACGCCGATGATCTCCATGCTTCGCGAAC TGGTCAGCCTGGGTGCGAATGGAGCCCCGGCTCGACCAGCAGTGCTGATCCAGTCCGCGAGGTCACTGGCCGAGCGCGCT TTTGCAAACGAACTTGCGAGTCTTGCCGACCGCGTTCGCGTTGTCCGCGTGCTGGGAGATGCCAAGGGTGCGCAAGCGGG GGCCGACTACGACTTGGAAGGCCGGATCGACCTGCAACTGCTGTCCGCTGTCCTGCCCTTCGGAGATCACGACTTCTACC TGTGCGGGCCCAAAGGCTTCATGCAGGCAATCTACGATGCGCTGCGTGGCGCAAACGTGCCTGACCATCGCATCCATGCC GAAGCGTTCGGACCTTCGTCGCTTGTCCGCAGGCGCGATACGACGCGCGAAACAGCGCCAGCCGCACAACCTTCTGCCGT CCCGGTCCCCGTGCTCTTCACCGCCTCGCTCAAGGAAGCGCGCTGGAAGCCCGGCGAAGGCACCCTGCTGGAACTTGCCG AAGCCCGCGGCCTCAAGCCCGAATTCGGATGCCGCAGCGGATCGTGCGCATCCTGCAAGGTGAAGCTTGTCTCGGGCGCG GTCGCCTATCCGCGCACGCCATCTGCCGAAGTCGCAAGCGGCGAAGTTCTGCTGTGTTGCGCTGTCCCTGCCGAAGGGAA CGACAAGCCGCTTCAGGTCGAAGCGTGA
Upstream 100 bases:
>100_bases CGGACGGCGGCAGGCCTGCGCGCCGCAGCCTGAAGAGACGTCGGTGGTCCGCGCAAGCCCGCCGCCAGCGGACCACCGGC CCCTCGTTGTGGAGGAAGCC
Downstream 100 bases:
>100_bases CCCCAAACTCATTTCCAACGAAGGAGCCTGCCATGACCAGACCACCTCTCCCGCCGTTTGACGGAGCCAGTGCCATCGAA AAGGTGCGCCTCGCCGAGGA
Product: oxidoreductase FAD/NAD(P)-binding
Products: NA
Alternate protein names: Flavohemoglobin; Hemoglobin-like protein; Nitric oxide dioxygenase; NO oxygenase; NOD [H]
Number of amino acids: Translated: 675; Mature: 675
Protein sequence:
>675_residues MDDTQRVANSPIWHEGERALQAHVGVVDRMGEVGARVIRPFMPDQHRTFYAQLPFVILGSVDAEGAAWATVVEGEPGFLS SPDPKSLVLGALPHADDPALGGIHDEAALGLLGIELHNRRRNRVNGTLRFPSAGAPLLEVGQSFGNCPQYIQLRDATLSR APAAPPPHLAEELPALDAAARAMIGSADTLFVASYADRLDSGRQVDVSHRGGKAGFVRVDAEGKLTIPDFAGNLFFATLG NVLLNGQAGLVFIDFESGDLLQMSGKAEVVLDSPEIASFAGAERLWTFVPQRIVRRKGALALRWSFRDNGWSPNSLATGQ WPAALHWQQLRVERIVAESASIRSFHLRPVSPDLGWQHEAGQHLPIRVRLPGEDSPAVRTYTLSSAPSDPLYRISVKREG KVSAWLHEQVREGDIIEARAPAGSFVIEPGAPRLAVLIGAGIGITPMISMLRELVSLGANGAPARPAVLIQSARSLAERA FANELASLADRVRVVRVLGDAKGAQAGADYDLEGRIDLQLLSAVLPFGDHDFYLCGPKGFMQAIYDALRGANVPDHRIHA EAFGPSSLVRRRDTTRETAPAAQPSAVPVPVLFTASLKEARWKPGEGTLLELAEARGLKPEFGCRSGSCASCKVKLVSGA VAYPRTPSAEVASGEVLLCCAVPAEGNDKPLQVEA
Sequences:
>Translated_675_residues MDDTQRVANSPIWHEGERALQAHVGVVDRMGEVGARVIRPFMPDQHRTFYAQLPFVILGSVDAEGAAWATVVEGEPGFLS SPDPKSLVLGALPHADDPALGGIHDEAALGLLGIELHNRRRNRVNGTLRFPSAGAPLLEVGQSFGNCPQYIQLRDATLSR APAAPPPHLAEELPALDAAARAMIGSADTLFVASYADRLDSGRQVDVSHRGGKAGFVRVDAEGKLTIPDFAGNLFFATLG NVLLNGQAGLVFIDFESGDLLQMSGKAEVVLDSPEIASFAGAERLWTFVPQRIVRRKGALALRWSFRDNGWSPNSLATGQ WPAALHWQQLRVERIVAESASIRSFHLRPVSPDLGWQHEAGQHLPIRVRLPGEDSPAVRTYTLSSAPSDPLYRISVKREG KVSAWLHEQVREGDIIEARAPAGSFVIEPGAPRLAVLIGAGIGITPMISMLRELVSLGANGAPARPAVLIQSARSLAERA FANELASLADRVRVVRVLGDAKGAQAGADYDLEGRIDLQLLSAVLPFGDHDFYLCGPKGFMQAIYDALRGANVPDHRIHA EAFGPSSLVRRRDTTRETAPAAQPSAVPVPVLFTASLKEARWKPGEGTLLELAEARGLKPEFGCRSGSCASCKVKLVSGA VAYPRTPSAEVASGEVLLCCAVPAEGNDKPLQVEA >Mature_675_residues MDDTQRVANSPIWHEGERALQAHVGVVDRMGEVGARVIRPFMPDQHRTFYAQLPFVILGSVDAEGAAWATVVEGEPGFLS SPDPKSLVLGALPHADDPALGGIHDEAALGLLGIELHNRRRNRVNGTLRFPSAGAPLLEVGQSFGNCPQYIQLRDATLSR APAAPPPHLAEELPALDAAARAMIGSADTLFVASYADRLDSGRQVDVSHRGGKAGFVRVDAEGKLTIPDFAGNLFFATLG NVLLNGQAGLVFIDFESGDLLQMSGKAEVVLDSPEIASFAGAERLWTFVPQRIVRRKGALALRWSFRDNGWSPNSLATGQ WPAALHWQQLRVERIVAESASIRSFHLRPVSPDLGWQHEAGQHLPIRVRLPGEDSPAVRTYTLSSAPSDPLYRISVKREG KVSAWLHEQVREGDIIEARAPAGSFVIEPGAPRLAVLIGAGIGITPMISMLRELVSLGANGAPARPAVLIQSARSLAERA FANELASLADRVRVVRVLGDAKGAQAGADYDLEGRIDLQLLSAVLPFGDHDFYLCGPKGFMQAIYDALRGANVPDHRIHA EAFGPSSLVRRRDTTRETAPAAQPSAVPVPVLFTASLKEARWKPGEGTLLELAEARGLKPEFGCRSGSCASCKVKLVSGA VAYPRTPSAEVASGEVLLCCAVPAEGNDKPLQVEA
Specific function: Possesses Dihydropteridine Reductase Activity. Also Has Nitric Oxide Dioxygenase Activity. Seems To Reduces The Complexed Fe(3+) Iron Of Siderophores To Fe(2+), Thus Releasing It From The Chelator. [C]
COG id: COG3576
COG function: function code R; Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 FAD-binding FR-type domain [H]
Homologues:
Organism=Escherichia coli, GI1788903, Length=252, Percent_Identity=33.7301587301587, Blast_Score=124, Evalue=3e-29, Organism=Escherichia coli, GI1787658, Length=324, Percent_Identity=28.7037037037037, Blast_Score=107, Evalue=3e-24, Organism=Escherichia coli, GI1787098, Length=357, Percent_Identity=27.7310924369748, Blast_Score=92, Evalue=9e-20, Organism=Saccharomyces cerevisiae, GI6321673, Length=203, Percent_Identity=32.512315270936, Blast_Score=84, Evalue=6e-17,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017927 - InterPro: IPR001709 - InterPro: IPR012292 - InterPro: IPR009050 - InterPro: IPR000971 - InterPro: IPR008333 - InterPro: IPR001433 - InterPro: IPR000951 - InterPro: IPR017938 [H]
Pfam domain/function: PF00970 FAD_binding_6; PF00042 Globin; PF00175 NAD_binding_1 [H]
EC number: =1.14.12.17 [H]
Molecular weight: Translated: 72238; Mature: 72238
Theoretical pI: Translated: 6.62; Mature: 6.62
Prosite motif: PS00197 2FE2S_FER_1 ; PS51085 2FE2S_FER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDDTQRVANSPIWHEGERALQAHVGVVDRMGEVGARVIRPFMPDQHRTFYAQLPFVILGS CCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEEEEEC VDAEGAAWATVVEGEPGFLSSPDPKSLVLGALPHADDPALGGIHDEAALGLLGIELHNRR CCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHEEEEEEECCCC RNRVNGTLRFPSAGAPLLEVGQSFGNCPQYIQLRDATLSRAPAAPPPHLAEELPALDAAA CCCCCCEEECCCCCCHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCCHHHHHCCHHHHHH RAMIGSADTLFVASYADRLDSGRQVDVSHRGGKAGFVRVDAEGKLTIPDFAGNLFFATLG HHHHCCCCCEEEEHHHHHCCCCCEEEECCCCCCCEEEEECCCCCEECCCCCCCHHHHHHH NVLLNGQAGLVFIDFESGDLLQMSGKAEVVLDSPEIASFAGAERLWTFVPQRIVRRKGAL HHEECCCCCEEEEEECCCCEEEECCCEEEEECCCCHHHHCCHHHHHHHHHHHHHHCCCCE ALRWSFRDNGWSPNSLATGQWPAALHWQQLRVERIVAESASIRSFHLRPVSPDLGWQHEA EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCC GQHLPIRVRLPGEDSPAVRTYTLSSAPSDPLYRISVKREGKVSAWLHEQVREGDIIEARA CCCCCEEEECCCCCCCCEEEEEECCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECC PAGSFVIEPGAPRLAVLIGAGIGITPMISMLRELVSLGANGAPARPAVLIQSARSLAERA CCCCEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH FANELASLADRVRVVRVLGDAKGAQAGADYDLEGRIDLQLLSAVLPFGDHDFYLCGPKGF HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCHHH MQAIYDALRGANVPDHRIHAEAFGPSSLVRRRDTTRETAPAAQPSAVPVPVLFTASLKEA HHHHHHHHHCCCCCCCEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCHHHH RWKPGEGTLLELAEARGLKPEFGCRSGSCASCKVKLVSGAVAYPRTPSAEVASGEVLLCC CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECEEECCCCCCCCCCCCCEEEEE AVPAEGNDKPLQVEA ECCCCCCCCCEEECC >Mature Secondary Structure MDDTQRVANSPIWHEGERALQAHVGVVDRMGEVGARVIRPFMPDQHRTFYAQLPFVILGS CCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEEEEEC VDAEGAAWATVVEGEPGFLSSPDPKSLVLGALPHADDPALGGIHDEAALGLLGIELHNRR CCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHEEEEEEECCCC RNRVNGTLRFPSAGAPLLEVGQSFGNCPQYIQLRDATLSRAPAAPPPHLAEELPALDAAA CCCCCCEEECCCCCCHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCCHHHHHCCHHHHHH RAMIGSADTLFVASYADRLDSGRQVDVSHRGGKAGFVRVDAEGKLTIPDFAGNLFFATLG HHHHCCCCCEEEEHHHHHCCCCCEEEECCCCCCCEEEEECCCCCEECCCCCCCHHHHHHH NVLLNGQAGLVFIDFESGDLLQMSGKAEVVLDSPEIASFAGAERLWTFVPQRIVRRKGAL HHEECCCCCEEEEEECCCCEEEECCCEEEEECCCCHHHHCCHHHHHHHHHHHHHHCCCCE ALRWSFRDNGWSPNSLATGQWPAALHWQQLRVERIVAESASIRSFHLRPVSPDLGWQHEA EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCC GQHLPIRVRLPGEDSPAVRTYTLSSAPSDPLYRISVKREGKVSAWLHEQVREGDIIEARA CCCCCEEEECCCCCCCCEEEEEECCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECC PAGSFVIEPGAPRLAVLIGAGIGITPMISMLRELVSLGANGAPARPAVLIQSARSLAERA CCCCEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH FANELASLADRVRVVRVLGDAKGAQAGADYDLEGRIDLQLLSAVLPFGDHDFYLCGPKGF HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCHHH MQAIYDALRGANVPDHRIHAEAFGPSSLVRRRDTTRETAPAAQPSAVPVPVLFTASLKEA HHHHHHHHHCCCCCCCEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCHHHH RWKPGEGTLLELAEARGLKPEFGCRSGSCASCKVKLVSGAVAYPRTPSAEVASGEVLLCC CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECEEECCCCCCCCCCCCCEEEEE AVPAEGNDKPLQVEA ECCCCCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10567266 [H]