| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200759
Identifier: 87200759
GI number: 87200759
Start: 2971137
End: 2971727
Strand: Direct
Name: 87200759
Synonym: Saro_2746
Alternate gene names: NA
Gene position: 2971137-2971727 (Clockwise)
Preceding gene: 87200758
Following gene: 87200760
Centisome position: 83.42
GC content: 65.48
Gene sequence:
>591_bases GTGAACGTCAAGGCGCTCCAAGCCGCGCTCGGCGTTGCGCCGGACGGCATCGCCGGCATTGCGACATTCGGCGCGTTGTT CCGCAAGCTCGGCGCGATCGACGATGTTGCGGCCCCACTCGCCATCGCGGCCAATGTCCACTTCCCCGCCTACGGCATCA TGGACAGCGAACTGCGGCTGGCGCACTTCATGGCCCAGCTCTGCCAAGAAAGCGGCTCGTTCCGTTACATGCGGGAGATC TGGGGGCCAACCGATGCGCAGCGGCGCTACGAAGGCCGCGCGGATCTTGGCAACAGGCAACCCGGCGACGGCAAGCGATA CCTCGGGCGCGGACCGATCCAGATCACCGGCCGGGCCAACTATCGCAAGTACGGGCGCCGCATCGGCATCGACATCGAGA ACAGCCCGGAGCTTGCCGAGCATCCATCGATCGGGTTGCACCTCGCGCTCGAATTCTGGCGCGTGAATGACCTGAACGCG CTTGCCGACGCCGACAACCTGCTGGCGATCACGAAGCGGATCAACGGCGGCACCAACGGGCTAGAGGACCGCAAGGCGCA TTTGGCCCGCATCAAGGCATGGCTGGCATGA
Upstream 100 bases:
>100_bases AGCGTCAAGTGCTGCTCACGACGTCCCAAGACAAAAACTACAACGAGATCGAGCGTCGCGTGACGGTTCTCGAGGGCTAC CACAAGCAGGGAGGTAGCCA
Downstream 100 bases:
>100_bases CGCCCCGGCAAGCTGGCGGCCTCGTGTTGGATAGCTTCGTCCTGGCGCTGTTGATCGCCCTCGTCCTGCTGGTCGCATCC TGCGCATGGAGTGCATTGCA
Product: glycoside hydrolase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 196; Mature: 196
Protein sequence:
>196_residues MNVKALQAALGVAPDGIAGIATFGALFRKLGAIDDVAAPLAIAANVHFPAYGIMDSELRLAHFMAQLCQESGSFRYMREI WGPTDAQRRYEGRADLGNRQPGDGKRYLGRGPIQITGRANYRKYGRRIGIDIENSPELAEHPSIGLHLALEFWRVNDLNA LADADNLLAITKRINGGTNGLEDRKAHLARIKAWLA
Sequences:
>Translated_196_residues MNVKALQAALGVAPDGIAGIATFGALFRKLGAIDDVAAPLAIAANVHFPAYGIMDSELRLAHFMAQLCQESGSFRYMREI WGPTDAQRRYEGRADLGNRQPGDGKRYLGRGPIQITGRANYRKYGRRIGIDIENSPELAEHPSIGLHLALEFWRVNDLNA LADADNLLAITKRINGGTNGLEDRKAHLARIKAWLA >Mature_196_residues MNVKALQAALGVAPDGIAGIATFGALFRKLGAIDDVAAPLAIAANVHFPAYGIMDSELRLAHFMAQLCQESGSFRYMREI WGPTDAQRRYEGRADLGNRQPGDGKRYLGRGPIQITGRANYRKYGRRIGIDIENSPELAEHPSIGLHLALEFWRVNDLNA LADADNLLAITKRINGGTNGLEDRKAHLARIKAWLA
Specific function: Unknown
COG id: COG3179
COG function: function code R; Predicted chitinase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To phage D29 and phage L5 gp10 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000726 [H]
Pfam domain/function: PF00182 Glyco_hydro_19 [H]
EC number: NA
Molecular weight: Translated: 21461; Mature: 21461
Theoretical pI: Translated: 9.67; Mature: 9.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNVKALQAALGVAPDGIAGIATFGALFRKLGAIDDVAAPLAIAANVHFPAYGIMDSELRL CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHEECCCCCCCCCCCHHHHH AHFMAQLCQESGSFRYMREIWGPTDAQRRYEGRADLGNRQPGDGKRYLGRGPIQITGRAN HHHHHHHHHCCCCHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCC YRKYGRRIGIDIENSPELAEHPSIGLHLALEFWRVNDLNALADADNLLAITKRINGGTNG HHHHCCEECCCCCCCCCHHHCCCCCEEEEEEEEECCCCHHHHCCHHHHHHHHHCCCCCCC LEDRKAHLARIKAWLA HHHHHHHHHHHHHHCC >Mature Secondary Structure MNVKALQAALGVAPDGIAGIATFGALFRKLGAIDDVAAPLAIAANVHFPAYGIMDSELRL CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHEECCCCCCCCCCCHHHHH AHFMAQLCQESGSFRYMREIWGPTDAQRRYEGRADLGNRQPGDGKRYLGRGPIQITGRAN HHHHHHHHHCCCCHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCC YRKYGRRIGIDIENSPELAEHPSIGLHLALEFWRVNDLNALADADNLLAITKRINGGTNG HHHHCCEECCCCCCCCCHHHCCCCCEEEEEEEEECCCCHHHHCCHHHHHHHHHCCCCCCC LEDRKAHLARIKAWLA HHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]