Click here to switch to the map view.

The map label for this gene is 87200728

Identifier: 87200728

GI number: 87200728

Start: 2947428

End: 2947976

Strand: Direct

Name: 87200728

Synonym: Saro_2715

Alternate gene names: NA

Gene position: 2947428-2947976 (Clockwise)

Preceding gene: 87200727

Following gene: 87200729

Centisome position: 82.76

GC content: 61.2

Gene sequence:

>549_bases
ATGAGCCTGACGCCTAAGCAGGAGGCTTTCGTCCGCGAATACCTCATCGACCTCAATGCCACGCAGGCTGCGATCCGGGC
GGGCTACAGCGCGAAGACGGCGCGCGCGGTAGGATCCGAGAACCTGACGAAACCTGATATCGCGACAGCCATCGCTGAGG
CTCAGGCGAAGCGTGCCGAGCGGACCCAGATCGACGCCGATTGGCTGCTCACTCGCCTTGCCGAAGAAAGCACCGCCGAC
GTCGCCGATCTCTACGACGAGCATGGTGGATTGAAACCGGTAAAAGACTGGCCACTGATCTGGCGGCAAGGTCTCGTCGC
AGGCCTCGACGTCGAGGAGATTCGGGTCGAAGGCGTCGTGATCGGCACTGTTCGCAAGCTCAAGCTCAGCGATCGGATCA
AGCGTCTCGAACTTATCGGCCGGCACATCGACGTCGGGGCGTTCAAGGACAAGGTCGAGCACAGCGGAAAGGTCGAGGTT
GAAACCCTCACCGAGGAGCAGTTGAACGCCAAGATCGCGGCGCTGATCGGTGGGCATGTCCAAGACTGA

Upstream 100 bases:

>100_bases
ATGGGCGCAAGTCGCTGCATCCCGATCGCGATACCTGCCCGGCGGATCATCAGCGCAGACGGCGCTACGTCATGGGCCAG
ACTTTGACCAGGAGGGGGAA

Downstream 100 bases:

>100_bases
ACTCTATGCCCTGCTCAAGGAAAAGGACCGTAGGCGCCAACTCAGCGGCGAACCGACGGCCCTGTTCAAGCGAACCGACA
AGCAGGCCGAACAAGCCGCA

Product: terminase small subunit

Products: NA

Alternate protein names: Phage Terminase Small Subunit; Phage Terminase; Prophage Lp2 Protein; Terminase Small Subunit Superfamily; Bacteriophage Terminase Small Subunit

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MSLTPKQEAFVREYLIDLNATQAAIRAGYSAKTARAVGSENLTKPDIATAIAEAQAKRAERTQIDADWLLTRLAEESTAD
VADLYDEHGGLKPVKDWPLIWRQGLVAGLDVEEIRVEGVVIGTVRKLKLSDRIKRLELIGRHIDVGAFKDKVEHSGKVEV
ETLTEEQLNAKIAALIGGHVQD

Sequences:

>Translated_182_residues
MSLTPKQEAFVREYLIDLNATQAAIRAGYSAKTARAVGSENLTKPDIATAIAEAQAKRAERTQIDADWLLTRLAEESTAD
VADLYDEHGGLKPVKDWPLIWRQGLVAGLDVEEIRVEGVVIGTVRKLKLSDRIKRLELIGRHIDVGAFKDKVEHSGKVEV
ETLTEEQLNAKIAALIGGHVQD
>Mature_181_residues
SLTPKQEAFVREYLIDLNATQAAIRAGYSAKTARAVGSENLTKPDIATAIAEAQAKRAERTQIDADWLLTRLAEESTADV
ADLYDEHGGLKPVKDWPLIWRQGLVAGLDVEEIRVEGVVIGTVRKLKLSDRIKRLELIGRHIDVGAFKDKVEHSGKVEVE
TLTEEQLNAKIAALIGGHVQD

Specific function: Unknown

COG id: COG3728

COG function: function code L; Phage terminase, small subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20019; Mature: 19888

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLTPKQEAFVREYLIDLNATQAAIRAGYSAKTARAVGSENLTKPDIATAIAEAQAKRAE
CCCCCHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
RTQIDADWLLTRLAEESTADVADLYDEHGGLKPVKDWPLIWRQGLVAGLDVEEIRVEGVV
HHCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCHHHEEECEEE
IGTVRKLKLSDRIKRLELIGRHIDVGAFKDKVEHSGKVEVETLTEEQLNAKIAALIGGHV
EECHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCC
QD
CC
>Mature Secondary Structure 
SLTPKQEAFVREYLIDLNATQAAIRAGYSAKTARAVGSENLTKPDIATAIAEAQAKRAE
CCCCHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
RTQIDADWLLTRLAEESTADVADLYDEHGGLKPVKDWPLIWRQGLVAGLDVEEIRVEGVV
HHCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCHHHEEECEEE
IGTVRKLKLSDRIKRLELIGRHIDVGAFKDKVEHSGKVEVETLTEEQLNAKIAALIGGHV
EECHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCC
QD
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA