| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200662
Identifier: 87200662
GI number: 87200662
Start: 2885150
End: 2886268
Strand: Reverse
Name: 87200662
Synonym: Saro_2649
Alternate gene names: NA
Gene position: 2886268-2885150 (Counterclockwise)
Preceding gene: 87200663
Following gene: 87200661
Centisome position: 81.04
GC content: 68.54
Gene sequence:
>1119_bases GTGGCACCTGCCGTTTCCCCTGCTGACGGTCTGATCGTCCTGCTGCCAGCCTCGCCCGACGAGGCGTGGCGCTGGTGGCG CGTGGAAGCCGATGGCATCGGTGCGGAACAGTTCCTCGACGGGCCGCTGGGCAATGCGCCGTGGGGCGAGACCGGCTCCG TGACGGTGCTGGTTCCTGCGGCGGATGCGCCGGTCATCGACAAGCCGATGTCCGCCATGCCCGTTGCCCAGGCGCTTGCT GCGGAAAGGCTGGCGCTGGCTCAGGCGGGGCTTGCGGTAGATCATCACGTCGCCGTTGCCGAGCATCGCGGTCGGCTGCT TTCGGCAACTGTCTCAGCCGCCGACATGGACCGCTGGATCGCCGATTTGTCCGGTCTCGGGCTCGATCCCGAATCCATCA TACCGGCTGGACTGGTCCTGCCGCGCGATGATGACCGGCTGGTCCTTGGCACGCTTGGCGGGCAGCTTCTGGCGCGGACA CCCGGGGTGGCGTTCGCTGGCGAAGAAGCGTTGGTGATGACGCTTGGCGCGGGACTTGAGCAGGTTCTGACCGAGGAAGA GCGGATCGCGCAGAGCCTTGCCGCGATCCATGCCGCGCCGCCGCTGAACCTGCGGCAGGGAGCCTATGCGGCCAAGCGGG TTTCGGTCTTTCGCACCGCCGACTGGCTGGGGCTGGCGCGAATGGCGGCCATTGCCGCGCTTCTCGGGCTGCTGCTCATG CTGGTGTGGATCGTGAAGTGGAACATCGACAGCTCGGCGCTGGAAAGCCGTGCGCTGGAAATGGCGCAGGCCCGCTTTCC GGCCGCGACCGATATCGACACGGCCGAACGCCTGTTGAACGCGGAACTCGCCCGGCGCGGGCAGGGCGGAGCGAGCTTTG CCGCGCCTGCCGCAGCTCTGCTTGAAGCGATGCGGGCGGTGCCGGCAGTCAGGCTGCGCGACCTGGGCTATGCGCCGGAC GGCACGCTGCGCTTCACTGCCGCCGCGCCGCGTGCCGATGATGTGAACGCGGTGCTGATCGCCTTGCAGAACGAGGGTTG GAAAGTGACAGTGCCACCCGCGCTTGCGCCCGATCCGACCGGCGCGACCGTCGCCGCGATCACCGTGAGGGCGCCATGA
Upstream 100 bases:
>100_bases CGGGAAGCCGTTCGAGATCTTCTCGCTTGGCGCCGACGGCCAGCCGGGCGGCAGCGAGCTGAACGCCGACATCTACGCTG GGCAAAAGTGATCCGGGTAC
Downstream 100 bases:
>100_bases GGAGCGGTTTGAACGTGTGGTACGGCGGCCTGACGGCGCGCGAGCGGGGCCTTGTCAGCGTCGCTGGCGGGCTGGTGGCG TCGATCGTCCTTGTCTACGG
Product: general secretion pathway L
Products: NA
Alternate protein names: Type II Secretory Pathway Component PulL
Number of amino acids: Translated: 372; Mature: 371
Protein sequence:
>372_residues MAPAVSPADGLIVLLPASPDEAWRWWRVEADGIGAEQFLDGPLGNAPWGETGSVTVLVPAADAPVIDKPMSAMPVAQALA AERLALAQAGLAVDHHVAVAEHRGRLLSATVSAADMDRWIADLSGLGLDPESIIPAGLVLPRDDDRLVLGTLGGQLLART PGVAFAGEEALVMTLGAGLEQVLTEEERIAQSLAAIHAAPPLNLRQGAYAAKRVSVFRTADWLGLARMAAIAALLGLLLM LVWIVKWNIDSSALESRALEMAQARFPAATDIDTAERLLNAELARRGQGGASFAAPAAALLEAMRAVPAVRLRDLGYAPD GTLRFTAAAPRADDVNAVLIALQNEGWKVTVPPALAPDPTGATVAAITVRAP
Sequences:
>Translated_372_residues MAPAVSPADGLIVLLPASPDEAWRWWRVEADGIGAEQFLDGPLGNAPWGETGSVTVLVPAADAPVIDKPMSAMPVAQALA AERLALAQAGLAVDHHVAVAEHRGRLLSATVSAADMDRWIADLSGLGLDPESIIPAGLVLPRDDDRLVLGTLGGQLLART PGVAFAGEEALVMTLGAGLEQVLTEEERIAQSLAAIHAAPPLNLRQGAYAAKRVSVFRTADWLGLARMAAIAALLGLLLM LVWIVKWNIDSSALESRALEMAQARFPAATDIDTAERLLNAELARRGQGGASFAAPAAALLEAMRAVPAVRLRDLGYAPD GTLRFTAAAPRADDVNAVLIALQNEGWKVTVPPALAPDPTGATVAAITVRAP >Mature_371_residues APAVSPADGLIVLLPASPDEAWRWWRVEADGIGAEQFLDGPLGNAPWGETGSVTVLVPAADAPVIDKPMSAMPVAQALAA ERLALAQAGLAVDHHVAVAEHRGRLLSATVSAADMDRWIADLSGLGLDPESIIPAGLVLPRDDDRLVLGTLGGQLLARTP GVAFAGEEALVMTLGAGLEQVLTEEERIAQSLAAIHAAPPLNLRQGAYAAKRVSVFRTADWLGLARMAAIAALLGLLLML VWIVKWNIDSSALESRALEMAQARFPAATDIDTAERLLNAELARRGQGGASFAAPAAALLEAMRAVPAVRLRDLGYAPDG TLRFTAAAPRADDVNAVLIALQNEGWKVTVPPALAPDPTGATVAAITVRAP
Specific function: Unknown
COG id: COG3297
COG function: function code U; Type II secretory pathway, component PulL
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38723; Mature: 38592
Theoretical pI: Translated: 4.56; Mature: 4.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPAVSPADGLIVLLPASPDEAWRWWRVEADGIGAEQFLDGPLGNAPWGETGSVTVLVPA CCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCHHHHHCCCCCCCCCCCCCCEEEEEEC ADAPVIDKPMSAMPVAQALAAERLALAQAGLAVDHHVAVAEHRGRLLSATVSAADMDRWI CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEHHHHHHHHHHH ADLSGLGLDPESIIPAGLVLPRDDDRLVLGTLGGQLLARTPGVAFAGEEALVMTLGAGLE HHHHCCCCCHHHHCCCCEEECCCCCCEEEEECCCHHHHCCCCCEECCCCEEEEEHHCCHH QVLTEEERIAQSLAAIHAAPPLNLRQGAYAAKRVSVFRTADWLGLARMAAIAALLGLLLM HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVWIVKWNIDSSALESRALEMAQARFPAATDIDTAERLLNAELARRGQGGASFAAPAAAL HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH LEAMRAVPAVRLRDLGYAPDGTLRFTAAAPRADDVNAVLIALQNEGWKVTVPPALAPDPT HHHHHHCCHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCEEEEECCCCCCCCC GATVAAITVRAP CCEEEEEEEECC >Mature Secondary Structure APAVSPADGLIVLLPASPDEAWRWWRVEADGIGAEQFLDGPLGNAPWGETGSVTVLVPA CCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCHHHHHCCCCCCCCCCCCCCEEEEEEC ADAPVIDKPMSAMPVAQALAAERLALAQAGLAVDHHVAVAEHRGRLLSATVSAADMDRWI CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEHHHHHHHHHHH ADLSGLGLDPESIIPAGLVLPRDDDRLVLGTLGGQLLARTPGVAFAGEEALVMTLGAGLE HHHHCCCCCHHHHCCCCEEECCCCCCEEEEECCCHHHHCCCCCEECCCCEEEEEHHCCHH QVLTEEERIAQSLAAIHAAPPLNLRQGAYAAKRVSVFRTADWLGLARMAAIAALLGLLLM HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVWIVKWNIDSSALESRALEMAQARFPAATDIDTAERLLNAELARRGQGGASFAAPAAAL HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH LEAMRAVPAVRLRDLGYAPDGTLRFTAAAPRADDVNAVLIALQNEGWKVTVPPALAPDPT HHHHHHCCHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCEEEEECCCCCCCCC GATVAAITVRAP CCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA