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The map label for this gene is ybiL [C]

Identifier: 87200625

GI number: 87200625

Start: 2824855

End: 2827278

Strand: Direct

Name: ybiL [C]

Synonym: Saro_2612

Alternate gene names: 87200625

Gene position: 2824855-2827278 (Clockwise)

Preceding gene: 87200623

Following gene: 87200626

Centisome position: 79.31

GC content: 66.5

Gene sequence:

>2424_bases
ATGATCACAATACCTCGCACCAACCGGCACGGTCCCCGATCGACCGCGCATGTACTCATGATGGGCAGCGCCATGCTGAT
GGCAATGCTGGCGGCGCCGACCGCGGCACGCGCGCAGGACCAGGATGGCAGCACGCAGCAGGCCTCGGGCACGGAACCGG
ACTATCACGTGGACACGATCGTGGTCACGGCCACGCGAAGGGCGCAGTCGCTCCAGGACGTCGGGCTGAGCATCACCGCG
ATCGGCGGCGAGGAGCTTGCCGCCCGGGGCGCCACCGATATCGAGAGCTTTGCCCCGTCGATCCCGAACCTGGGTTTCGG
CGCGACCAACGACGGCGTGCTCGCCAACCGCTCGATCTCCATTCGCGGGATCGAGGGGCTCAACACCACCGGGTTCTATA
TCGACGACGTGCCGCTCGATCCTTCCGTCAGCCCGCTGGTGCTCGACGTGGAGCGCATCGAAGTGCTGCGCGGGCCGCAG
GGTACGCTCTACGGCGCGCGTGGCCTTGGCGGCACCGTGCGCATGATCACCAAGCAGCCCGAGTTCGACGGGCTGAGCGG
CAAGGCTCACGCCAGGATCTCGACAGTCAAGGAGGGGGACCTGAACCTTTCCGCCGACGGAGCGATCAACGTGCCGGTGG
GCGAACAGGCAGCGGTGCGCCTTTCGGGCTACTATGACCGGCAAAGCGGCATCTTCGACCGTGTCGTCGGCCCGATCGCC
TCGCCTGGCATTGCGGCGGCCTCGGGCAGCGGGTTGACCGGCGGGAGCGCGATCGTGCGCAAGAACGTCGACGACAAGAC
CACCTTCGGCGGGATGGCGGCGCTGCGGATCAGGCCGGCCGCCGATCTCGACATCACCGCGCGCTTAATGGCGCAGAAGA
CGAAGCTGGACGGCTACCCGCTTGCCGACTTCGCGTTCGACCCGGACAGCGAAACCAGCCCCACCGTGCTGAAAGCCGAC
GATTTTACCCAGAACCGCCTGTTCGACATCGCCGAGGGCGGAACCGACCGGTGGGTCCAGGCAAGCCTGGGCATCTCCTA
TGACGCTGGGTTCGGCACCGTCTCATCGTCGACCGGGTATTTCAATCGCCGGACGCAGGAGACCGAGGACAGCAGCGAGT
TCATCTCGTTCACGCTGCTCGGCCCGATCCTCCAGAGCGCGGGCCTGCCGACGGAGCCGGCTGCCGTCCAGTCGCCCATT
CATCAGCGCCTGGACTTCCGCACCTTCGTGCAGGAATTGCGGTTCGTGTCGGACTTCAAGGGCCCGCTGCAGCTCACCGC
GGGCCTGTTCTACCAGGACACGGACAGTCGCGAGGCCTTCACGCCGGACAACATCGCGCCCGGCTTCGACGAGATATTCT
CCACCCAGCTCAACGGCGGGGTTGCCGCGAGCGGGTTCACCGGGTTCGGCGACCTCATCTTCCGGTCCGACAGCCGGTTC
AAGGTCAAGGAGTTCGGCGCCTATGGCGAGGCGTCGATCAAGCCGGTGGACCGGCTCACCCTTACGGTCGGCGCGCGCTA
CTTCGACGTGAAGACGCGGTTCACCGACTTTCAGGAGGGCTTCGCGGTGGGCTCCAGCGTGAGCGTGGGGCCGCTTCGGA
GCAAGGAGCACGGGGTCAACCTGAAGTTCCTGGCCGAGTTCAAGGCCAGCGAAGACGTCAATCTCTACGCCTCGGCGGCG
GAAGGCTTCCGCATCGGGGGCGCGAACAGCGAGCTGCCTTCGGGCCTGGGCTGCCCCGCGCAGGCCCAGGCGCTGGGGAT
CAACCCGGACGACGCCACGACCTTCCAGTCGGACAGCCTGTGGAGCTACGAAGCCGGGGTTAAATCGACGCTCGGCGGGG
GTGTGGCGACGGTCAATGCCGCGGCGTTCTACATCGACTTCTCGAACATTCAGCAGCGGGTGTTGCTGGAATGCGGCTTC
GACTTCGTGGCCAACATCGGCGCGGCGCGCAGCAAGGGCTTCGAACTCGAGACGGCACTTCATCCGGTGCGCGGGCTGAC
GCTGGGCGTCAACCTTGGCTACACGGACTCGCGCTTCAGCGAGACGGTGCCGGGGCTCGTCACCAAGGGCGACCGCATCC
AGCAGGTGCCGCAATGGACCGCATCGGCGAACGCTGACTACCGGTTCGCGCTCGACAGCGAATGGGAAATGTTCGTCCGT
GGCGACCTCGCCTACGTCGGCAGCAGCATCAGCCGCGTGGTGGATGCCGCAAACCCCCGCACCAGGCCCAGCTACACCCT
GCTCAATACGCGCCTGGGGCTGAGCCGCGACCGCTACACCGTCACGCTGTTCGTCGACAACCTGACGAACGAGGACGCCG
TCTTCGGCGACAACCGCACGCTTGCGGCCGAAGCCTATGGACGCCCCCGCATCGTCCGCAACCGCCCGCGCACGATCGGC
CTCGATCTTGCGCTGGAATTCTGA

Upstream 100 bases:

>100_bases
ATCACCCGAATTACCCATCTTTGCTAGATTCAGCACACGAGGACTGCGCCAGGGGGGACGGTCCGGACTGTTTCAAGCAA
ATTCTTATCGGGTGAGCCAG

Downstream 100 bases:

>100_bases
AGCACACGAGCAGGGCGGGACTACCCGATGACCACTGTCGCCAGCGAACTCTTCGCGCTCGACGATGCCAAGATCCACAT
CGAACGGCAGGGTAGCGGCA

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NB-Dependent Receptor Plug; NB-Dependent Receptor-Like Protein; NB-Dependent Receptor Domain Protein; NB-Dependent Receptor Plug Domain Protein; Receptor -Mostly Fe Transport; Outer Membrane Protein; NB Dependent Receptor; Nb-Dependent Receptor; Outer Membrane nB-Dependent Receptor; NB-Dependent Siderophore Receptor; Siderophore Receptor Protein; NB-Dependent Outer Membrane Receptor; NB-Dependent Receptor Protein; NB-Dependent Siderophore Receptor Protein

Number of amino acids: Translated: 807; Mature: 807

Protein sequence:

>807_residues
MITIPRTNRHGPRSTAHVLMMGSAMLMAMLAAPTAARAQDQDGSTQQASGTEPDYHVDTIVVTATRRAQSLQDVGLSITA
IGGEELAARGATDIESFAPSIPNLGFGATNDGVLANRSISIRGIEGLNTTGFYIDDVPLDPSVSPLVLDVERIEVLRGPQ
GTLYGARGLGGTVRMITKQPEFDGLSGKAHARISTVKEGDLNLSADGAINVPVGEQAAVRLSGYYDRQSGIFDRVVGPIA
SPGIAAASGSGLTGGSAIVRKNVDDKTTFGGMAALRIRPAADLDITARLMAQKTKLDGYPLADFAFDPDSETSPTVLKAD
DFTQNRLFDIAEGGTDRWVQASLGISYDAGFGTVSSSTGYFNRRTQETEDSSEFISFTLLGPILQSAGLPTEPAAVQSPI
HQRLDFRTFVQELRFVSDFKGPLQLTAGLFYQDTDSREAFTPDNIAPGFDEIFSTQLNGGVAASGFTGFGDLIFRSDSRF
KVKEFGAYGEASIKPVDRLTLTVGARYFDVKTRFTDFQEGFAVGSSVSVGPLRSKEHGVNLKFLAEFKASEDVNLYASAA
EGFRIGGANSELPSGLGCPAQAQALGINPDDATTFQSDSLWSYEAGVKSTLGGGVATVNAAAFYIDFSNIQQRVLLECGF
DFVANIGAARSKGFELETALHPVRGLTLGVNLGYTDSRFSETVPGLVTKGDRIQQVPQWTASANADYRFALDSEWEMFVR
GDLAYVGSSISRVVDAANPRTRPSYTLLNTRLGLSRDRYTVTLFVDNLTNEDAVFGDNRTLAAEAYGRPRIVRNRPRTIG
LDLALEF

Sequences:

>Translated_807_residues
MITIPRTNRHGPRSTAHVLMMGSAMLMAMLAAPTAARAQDQDGSTQQASGTEPDYHVDTIVVTATRRAQSLQDVGLSITA
IGGEELAARGATDIESFAPSIPNLGFGATNDGVLANRSISIRGIEGLNTTGFYIDDVPLDPSVSPLVLDVERIEVLRGPQ
GTLYGARGLGGTVRMITKQPEFDGLSGKAHARISTVKEGDLNLSADGAINVPVGEQAAVRLSGYYDRQSGIFDRVVGPIA
SPGIAAASGSGLTGGSAIVRKNVDDKTTFGGMAALRIRPAADLDITARLMAQKTKLDGYPLADFAFDPDSETSPTVLKAD
DFTQNRLFDIAEGGTDRWVQASLGISYDAGFGTVSSSTGYFNRRTQETEDSSEFISFTLLGPILQSAGLPTEPAAVQSPI
HQRLDFRTFVQELRFVSDFKGPLQLTAGLFYQDTDSREAFTPDNIAPGFDEIFSTQLNGGVAASGFTGFGDLIFRSDSRF
KVKEFGAYGEASIKPVDRLTLTVGARYFDVKTRFTDFQEGFAVGSSVSVGPLRSKEHGVNLKFLAEFKASEDVNLYASAA
EGFRIGGANSELPSGLGCPAQAQALGINPDDATTFQSDSLWSYEAGVKSTLGGGVATVNAAAFYIDFSNIQQRVLLECGF
DFVANIGAARSKGFELETALHPVRGLTLGVNLGYTDSRFSETVPGLVTKGDRIQQVPQWTASANADYRFALDSEWEMFVR
GDLAYVGSSISRVVDAANPRTRPSYTLLNTRLGLSRDRYTVTLFVDNLTNEDAVFGDNRTLAAEAYGRPRIVRNRPRTIG
LDLALEF
>Mature_807_residues
MITIPRTNRHGPRSTAHVLMMGSAMLMAMLAAPTAARAQDQDGSTQQASGTEPDYHVDTIVVTATRRAQSLQDVGLSITA
IGGEELAARGATDIESFAPSIPNLGFGATNDGVLANRSISIRGIEGLNTTGFYIDDVPLDPSVSPLVLDVERIEVLRGPQ
GTLYGARGLGGTVRMITKQPEFDGLSGKAHARISTVKEGDLNLSADGAINVPVGEQAAVRLSGYYDRQSGIFDRVVGPIA
SPGIAAASGSGLTGGSAIVRKNVDDKTTFGGMAALRIRPAADLDITARLMAQKTKLDGYPLADFAFDPDSETSPTVLKAD
DFTQNRLFDIAEGGTDRWVQASLGISYDAGFGTVSSSTGYFNRRTQETEDSSEFISFTLLGPILQSAGLPTEPAAVQSPI
HQRLDFRTFVQELRFVSDFKGPLQLTAGLFYQDTDSREAFTPDNIAPGFDEIFSTQLNGGVAASGFTGFGDLIFRSDSRF
KVKEFGAYGEASIKPVDRLTLTVGARYFDVKTRFTDFQEGFAVGSSVSVGPLRSKEHGVNLKFLAEFKASEDVNLYASAA
EGFRIGGANSELPSGLGCPAQAQALGINPDDATTFQSDSLWSYEAGVKSTLGGGVATVNAAAFYIDFSNIQQRVLLECGF
DFVANIGAARSKGFELETALHPVRGLTLGVNLGYTDSRFSETVPGLVTKGDRIQQVPQWTASANADYRFALDSEWEMFVR
GDLAYVGSSISRVVDAANPRTRPSYTLLNTRLGLSRDRYTVTLFVDNLTNEDAVFGDNRTLAAEAYGRPRIVRNRPRTIG
LDLALEF

Specific function: Probable Receptor, Tonb-Dependent, That Participates In Iron Transport. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787024, Length=231, Percent_Identity=26.4069264069264, Blast_Score=66, Evalue=1e-11,
Organism=Escherichia coli, GI1788478, Length=141, Percent_Identity=32.6241134751773, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 86389; Mature: 86389

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITIPRTNRHGPRSTAHVLMMGSAMLMAMLAAPTAARAQDQDGSTQQASGTEPDYHVDTI
CEECCCCCCCCCCCHHHEEEHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCEEEEE
VVTATRRAQSLQDVGLSITAIGGEELAARGATDIESFAPSIPNLGFGATNDGVLANRSIS
EEEECHHHHHHHHCCEEEEEECCHHHHHCCCCCHHHHCCCCCCCCCCCCCCCEEECCEEE
IRGIEGLNTTGFYIDDVPLDPSVSPLVLDVERIEVLRGPQGTLYGARGLGGTVRMITKQP
EEECCCCCCCCEEEECCCCCCCCCCEEEEHHHHHHHCCCCCCEEECCCCCCEEEEEEECC
EFDGLSGKAHARISTVKEGDLNLSADGAINVPVGEQAAVRLSGYYDRQSGIFDRVVGPIA
CCCCCCCCCCEEEEEEECCCCEECCCCEEECCCCCCEEEEEECEECCCCCCHHHHHHCCC
SPGIAAASGSGLTGGSAIVRKNVDDKTTFGGMAALRIRPAADLDITARLMAQKTKLDGYP
CCCCEECCCCCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCC
LADFAFDPDSETSPTVLKADDFTQNRLFDIAEGGTDRWVQASLGISYDAGFGTVSSSTGY
CCCCEECCCCCCCCCEEECCCCCCCCEEEECCCCCCCEEEEECCEEECCCCCCCCCCCCC
FNRRTQETEDSSEFISFTLLGPILQSAGLPTEPAAVQSPIHQRLDFRTFVQELRFVSDFK
CCCCCCCCCCCHHHEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
GPLQLTAGLFYQDTDSREAFTPDNIAPGFDEIFSTQLNGGVAASGFTGFGDLIFRSDSRF
CCCEEEECEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCCCCCCCEEEECCCCE
KVKEFGAYGEASIKPVDRLTLTVGARYFDVKTRFTDFQEGFAVGSSVSVGPLRSKEHGVN
EHHHCCCCCCCCCCCCCEEEEEECCEEEEEEHHHCCHHHHHCCCCCCCCCCCCCCCCCCC
LKFLAEFKASEDVNLYASAAEGFRIGGANSELPSGLGCPAQAQALGINPDDATTFQSDSL
EEEEEEECCCCCCEEEEECCCCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCEECCCCC
WSYEAGVKSTLGGGVATVNAAAFYIDFSNIQQRVLLECGFDFVANIGAARSKGFELETAL
EEECCCCHHHCCCCEEEEEEEEEEEEHHHHHHHHHHHHCHHHHHCCCCHHCCCCCHHHHH
HPVRGLTLGVNLGYTDSRFSETVPGLVTKGDRIQQVPQWTASANADYRFALDSEWEMFVR
CCCCCEEEEEECCCCCCHHHHCCCCHHCCCHHHHHCCCHHCCCCCCEEEEECCCCEEEEE
GDLAYVGSSISRVVDAANPRTRPSYTLLNTRLGLSRDRYTVTLFVDNLTNEDAVFGDNRT
CCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCEECCCCE
LAAEAYGRPRIVRNRPRTIGLDLALEF
EEECCCCCCCEECCCCCEEEEEEEEEC
>Mature Secondary Structure
MITIPRTNRHGPRSTAHVLMMGSAMLMAMLAAPTAARAQDQDGSTQQASGTEPDYHVDTI
CEECCCCCCCCCCCHHHEEEHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCEEEEE
VVTATRRAQSLQDVGLSITAIGGEELAARGATDIESFAPSIPNLGFGATNDGVLANRSIS
EEEECHHHHHHHHCCEEEEEECCHHHHHCCCCCHHHHCCCCCCCCCCCCCCCEEECCEEE
IRGIEGLNTTGFYIDDVPLDPSVSPLVLDVERIEVLRGPQGTLYGARGLGGTVRMITKQP
EEECCCCCCCCEEEECCCCCCCCCCEEEEHHHHHHHCCCCCCEEECCCCCCEEEEEEECC
EFDGLSGKAHARISTVKEGDLNLSADGAINVPVGEQAAVRLSGYYDRQSGIFDRVVGPIA
CCCCCCCCCCEEEEEEECCCCEECCCCEEECCCCCCEEEEEECEECCCCCCHHHHHHCCC
SPGIAAASGSGLTGGSAIVRKNVDDKTTFGGMAALRIRPAADLDITARLMAQKTKLDGYP
CCCCEECCCCCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCC
LADFAFDPDSETSPTVLKADDFTQNRLFDIAEGGTDRWVQASLGISYDAGFGTVSSSTGY
CCCCEECCCCCCCCCEEECCCCCCCCEEEECCCCCCCEEEEECCEEECCCCCCCCCCCCC
FNRRTQETEDSSEFISFTLLGPILQSAGLPTEPAAVQSPIHQRLDFRTFVQELRFVSDFK
CCCCCCCCCCCHHHEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
GPLQLTAGLFYQDTDSREAFTPDNIAPGFDEIFSTQLNGGVAASGFTGFGDLIFRSDSRF
CCCEEEECEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCCCCCCCEEEECCCCE
KVKEFGAYGEASIKPVDRLTLTVGARYFDVKTRFTDFQEGFAVGSSVSVGPLRSKEHGVN
EHHHCCCCCCCCCCCCCEEEEEECCEEEEEEHHHCCHHHHHCCCCCCCCCCCCCCCCCCC
LKFLAEFKASEDVNLYASAAEGFRIGGANSELPSGLGCPAQAQALGINPDDATTFQSDSL
EEEEEEECCCCCCEEEEECCCCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCEECCCCC
WSYEAGVKSTLGGGVATVNAAAFYIDFSNIQQRVLLECGFDFVANIGAARSKGFELETAL
EEECCCCHHHCCCCEEEEEEEEEEEEHHHHHHHHHHHHCHHHHHCCCCHHCCCCCHHHHH
HPVRGLTLGVNLGYTDSRFSETVPGLVTKGDRIQQVPQWTASANADYRFALDSEWEMFVR
CCCCCEEEEEECCCCCCHHHHCCCCHHCCCHHHHHCCCHHCCCCCCEEEEECCCCEEEEE
GDLAYVGSSISRVVDAANPRTRPSYTLLNTRLGLSRDRYTVTLFVDNLTNEDAVFGDNRT
CCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCEECCCCE
LAAEAYGRPRIVRNRPRTIGLDLALEF
EEECCCCCCCEECCCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA