| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200602
Identifier: 87200602
GI number: 87200602
Start: 2795589
End: 2796605
Strand: Reverse
Name: 87200602
Synonym: Saro_2589
Alternate gene names: NA
Gene position: 2796605-2795589 (Counterclockwise)
Preceding gene: 87200604
Following gene: 87200600
Centisome position: 78.52
GC content: 67.26
Gene sequence:
>1017_bases ATGCCAAACCCTGAAATCACGTTCCCCGGTCGCTATACCCCGGTCAACGCCGTCGCGTTTGCCAGTGCGAACGGGGCGAC CGAGATCGTCACGCCGTCTGCACCGCTGCCGGTGGCGATCGCGCCGTCCATTGCCAGCCTCGAGCCCGCTGGCGCGGCGG TGACCGGCACGACGATGCCTACTGGCGGGCAGGGGCTGACCGGATGGCTCTCGGCGATCTACCGCGCCTGCATCTCGGCC TTGCCGACCGGCAGCAACCACATCGGCAACGTCTTCGTCGACGACGTTTCCGACAACCTGACAGTTGCCGGCACGGCCAC GTCGGCGACGACGGTGGTGTCGAGCCCGACCACCGGTTTTGGCGGCGGTACCTTCCAGGTGACGTCGGCGGGCACCGGTT GCACGCTGACCTACGAGCAGTCGAACGATGGCACGACCTGGGTAGCCATGCCGGTAATGGCGGTCACCGCAGCGACATCG GCGCCGGTGCTGACGACGAACACCGCCGGCCTGTTCGCCTTCACTTGCGCATCGGCTTTCGTCCGGGTCCGGGTCTCGAC CTACGGGAGCGGCACGGTGGGCGTGTCGTTGGTGCTGAAGCGTCGCCCGCTGACGATCATGGGCACGTCGCTGGCCGGGG GGAGCGCGGCGCTGGGCTCTGTCTCGGTGACGGGTTCGGTCAACGGCAACATCGGTTATACCGACAGCACCAGCGTGATG GCTGCGTCGGCCGCCTTCAACGGCACCGGCCGGTTCCTCTCGTCGACGCACCACACGTTCTTCGCCGCCACCGCCTTTTC CGACGTGGCCGGTACGTTGTTCATCGACCAGACGCTGGACACGGGATCGACCTGGCAGCAGGTGGCCAGCACTGCCGTCT CGGCCAGTACCGCCGCGACGCTGAGCGTGCGCACGATGGGCAACTATGCCAACGCGACGCAGTACCGGGTCCGTTATGCC AATGGCCCCACGGCGCAGACGCTGTTCCGTCTTTCGAGCGTGCTGGCGGCATCCTGA
Upstream 100 bases:
>100_bases GACGTGGCGTTGGTCCGGCGCGATGCGATTTCCGTTTTCCTACACGAACCAACGTGGTTATCTAATTCGGTCGAATGTTC CAGAGACTATGGAGACTTCG
Downstream 100 bases:
>100_bases CCGGTCAGGCGGTCGGCGCCGCGCGGCAACCGCGCGGCGCTGCCGTCCCGGTCAGTAGTTCCACTGCACCTGCGCGCGCA CCAGATCGCCCTTGGCGCGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 338; Mature: 337
Protein sequence:
>338_residues MPNPEITFPGRYTPVNAVAFASANGATEIVTPSAPLPVAIAPSIASLEPAGAAVTGTTMPTGGQGLTGWLSAIYRACISA LPTGSNHIGNVFVDDVSDNLTVAGTATSATTVVSSPTTGFGGGTFQVTSAGTGCTLTYEQSNDGTTWVAMPVMAVTAATS APVLTTNTAGLFAFTCASAFVRVRVSTYGSGTVGVSLVLKRRPLTIMGTSLAGGSAALGSVSVTGSVNGNIGYTDSTSVM AASAAFNGTGRFLSSTHHTFFAATAFSDVAGTLFIDQTLDTGSTWQQVASTAVSASTAATLSVRTMGNYANATQYRVRYA NGPTAQTLFRLSSVLAAS
Sequences:
>Translated_338_residues MPNPEITFPGRYTPVNAVAFASANGATEIVTPSAPLPVAIAPSIASLEPAGAAVTGTTMPTGGQGLTGWLSAIYRACISA LPTGSNHIGNVFVDDVSDNLTVAGTATSATTVVSSPTTGFGGGTFQVTSAGTGCTLTYEQSNDGTTWVAMPVMAVTAATS APVLTTNTAGLFAFTCASAFVRVRVSTYGSGTVGVSLVLKRRPLTIMGTSLAGGSAALGSVSVTGSVNGNIGYTDSTSVM AASAAFNGTGRFLSSTHHTFFAATAFSDVAGTLFIDQTLDTGSTWQQVASTAVSASTAATLSVRTMGNYANATQYRVRYA NGPTAQTLFRLSSVLAAS >Mature_337_residues PNPEITFPGRYTPVNAVAFASANGATEIVTPSAPLPVAIAPSIASLEPAGAAVTGTTMPTGGQGLTGWLSAIYRACISAL PTGSNHIGNVFVDDVSDNLTVAGTATSATTVVSSPTTGFGGGTFQVTSAGTGCTLTYEQSNDGTTWVAMPVMAVTAATSA PVLTTNTAGLFAFTCASAFVRVRVSTYGSGTVGVSLVLKRRPLTIMGTSLAGGSAALGSVSVTGSVNGNIGYTDSTSVMA ASAAFNGTGRFLSSTHHTFFAATAFSDVAGTLFIDQTLDTGSTWQQVASTAVSASTAATLSVRTMGNYANATQYRVRYAN GPTAQTLFRLSSVLAAS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33899; Mature: 33768
Theoretical pI: Translated: 7.43; Mature: 7.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNPEITFPGRYTPVNAVAFASANGATEIVTPSAPLPVAIAPSIASLEPAGAAVTGTTMP CCCCCEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEECCCCCCCCCCCCEEECCCCC TGGQGLTGWLSAIYRACISALPTGSNHIGNVFVDDVSDNLTVAGTATSATTVVSSPTTGF CCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEEECCCCEEEEECCCCCC GGGTFQVTSAGTGCTLTYEQSNDGTTWVAMPVMAVTAATSAPVLTTNTAGLFAFTCASAF CCCEEEEEECCCCEEEEEEECCCCCEEEEEHHHHHHHCCCCCEEEECCCHHHHHHHHCEE VRVRVSTYGSGTVGVSLVLKRRPLTIMGTSLAGGSAALGSVSVTGSVNGNIGYTDSTSVM EEEEEEECCCCCEEEEEEEECCCEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCEE AASAAFNGTGRFLSSTHHTFFAATAFSDVAGTLFIDQTLDTGSTWQQVASTAVSASTAAT EEEEEECCCCCHHCCCCCEEEEEEHHHHCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEE LSVRTMGNYANATQYRVRYANGPTAQTLFRLSSVLAAS EEEEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCC >Mature Secondary Structure PNPEITFPGRYTPVNAVAFASANGATEIVTPSAPLPVAIAPSIASLEPAGAAVTGTTMP CCCCEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEECCCCCCCCCCCCEEECCCCC TGGQGLTGWLSAIYRACISALPTGSNHIGNVFVDDVSDNLTVAGTATSATTVVSSPTTGF CCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEEECCCCEEEEECCCCCC GGGTFQVTSAGTGCTLTYEQSNDGTTWVAMPVMAVTAATSAPVLTTNTAGLFAFTCASAF CCCEEEEEECCCCEEEEEEECCCCCEEEEEHHHHHHHCCCCCEEEECCCHHHHHHHHCEE VRVRVSTYGSGTVGVSLVLKRRPLTIMGTSLAGGSAALGSVSVTGSVNGNIGYTDSTSVM EEEEEEECCCCCEEEEEEEECCCEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCEE AASAAFNGTGRFLSSTHHTFFAATAFSDVAGTLFIDQTLDTGSTWQQVASTAVSASTAAT EEEEEECCCCCHHCCCCCEEEEEEHHHHCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEE LSVRTMGNYANATQYRVRYANGPTAQTLFRLSSVLAAS EEEEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA