| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200435
Identifier: 87200435
GI number: 87200435
Start: 2602704
End: 2604977
Strand: Direct
Name: 87200435
Synonym: Saro_2422
Alternate gene names: NA
Gene position: 2602704-2604977 (Clockwise)
Preceding gene: 87200434
Following gene: 87200436
Centisome position: 73.08
GC content: 70.67
Gene sequence:
>2274_bases ATGATCGCCGGCGCCGCACTTGCGCTGGCGGTTGCTGCGGTGCTTCCTGCGCCGCTCGATCTGGCGCGGCCGTGCACCGC GGGTGAAGCCGTGGCCTCGGACCTGCTGCGCCGCCGTCTGGCAGAGCGCGGTGCGGGAACCGGCAACTGCACCGCATACC TGCGGCTTGTCGCGCGAGACGATCCGACAGCCGAAGGCTTCACCATCGCGCGCAGCGGCAGGACGCTGACGATCAGCGCC CGGTCCCGGCGCGGGCTCGTTTATGGCGCGGGATGGGTGCTGGGGCATATGGACGGGCTGTCCCTGCCGTTCGCCGCAAC AGTGCGCGACGCGCCGAAACAGAAGGTGCGCGGCACCCAGATCGGCTATCGCCCCAAGAACAACAGCTACGATGCCTGGA CGCCTGAGATGCTGGCCCGCCAGATCGAGGATTTCGCGCTGTGGGGCGCAAACCGCATCCAGATCATCGCTCCTCGATCC GACGATGCGCCGACGTCGCCGGTCATGCCGGTCCCGCCCGAGAAGGCCGTGGTCGCCATGGCGGAGACCGCGCACCGGCT GGGGATCGAGGTGGCGATCTTCTATCCGCTGCTGGGCGACTACGATGGCGGTGCGTCCGACCGGGCAGAGGCCGACCGTC TCGACGCCCTGCTGGGCACGCTTCCGGCCGTCGACGCGCTCTATCTTCCCGGCGGAGACCCCGGACATACGCAACCCACG CGCCTGTTCCCTTTGGCGAAACGGCTTTCGCGGGTTCTGCGGGCCCGCTTCCCCCGGGCCGAACTGCTGATCTCCACGCA AGGCTTCGATGCCGCCGCGCTCGACGCCTTCTTCGCCGAGACGGATCGCCGCCCGCCGTGGCTTTCCGCCGTGTTCGTCG GCCCCCAGACGCGCATTGCCGCAAGCGACCACTTGCGCCGCCTTGGCGGACGCTATCCGGTCGAACTCTACCCCGACACC GCCCATGCGATGCAGGCGCAGCTGCCCGTCCCGGACTGGTACCCCGCCTTCGCGCTGGTCGAAGGACGCGAACCGGTTAA CCCGCGCCCCGCCGCCATGCGCGCGGCCTTTGCGCGGATGGCACCGGGCACACGCGGCGCGGTGAGCTATTCCGAAGGTG TGAACGACGACTGGAACGTGCACCAGTGGCTGGCGATGGGCTGGAATCCCGATGCCGATCCGGCGGAAATCGCGGCGCGC CATGCCCGCACCTATTTCGGCACGGCAGGATTCGCAGCGATCCCGGCGATGCTGGAAGACAACTGGCGTGGCGACCCTGC GGGCAACGAGGGCATCGACCGCACCCTCGCCTTCGTGGACGGACTGAGCCCTGCCCCCTGGGCGGGCTGGCGCGTCGCGC TCTACCGTTATCGCGCGGTGCAGGATGCGCTGGTGCGCGAGCGCTGGCGGCGCGCCCGTGCCCGCCAGGCCGAAGCGCTC TATGTTCTGCGGCAGGCCCCCGCCATCGGCGCCGCGGCGGCGGCGGCCGGCGCGACCCATGCCTTTGCCAAGCCGGAAAC GCCGCGCACCGCCGAACTGCTCGGCCGGCTTGTCGCGCTGGCAGACGAGTTGCGGGCCGCTGCCGGCATGCAGCTCTCCG TCGAACGTCACGGCGCGTCCGACTGGCGACGCGGCGCCAACCTCGACCGCGCGCAGGTTCTGCTCGATGACCGCGAGGCC ACCACCCGCGCCGTGGCCGCCGCGCTCGCCCTGCCGGACGAGGCGGCGCGCACGCGCGCGCTTGCCGCGATCGGCGATCC CTGGGGCATGGCCGCGCTCGTCCTCCACGACGACCTCGGCGATCCAGGCAACGAACCCCACCTCGTGCGCGGCGCGGGCG AAATGGCCGATCCGCAGGGCTGGCGCACCGCCATCGACGGCGTAAACGACCACACGCCCGGCGAGGGCTGGCGACTTGCC GAGATCACTTATGCCGAAGCGCTCTACGAGCACCCGCTGACCCTGCGCTACACCGGGCTCGCGGCAAACCGCGCCTATCG CCTGTGCTACCTGCGCGCCGGCGAGGATTATGCCCTTCCGCTCACGCTCACCGCGAACGGCCGCAAGCTTGATGCTCCCG CCATCCGCACCGCCAATCCGCAGGTCGTCGAAATCGACCTCCCGCGCGACATTGCCGCAACCGGCACGCTCGATCTCGTC TGGCAGCGCCCGCCCGGCATCGGCGGCGGCGGGCGCGGACGCCAGATCGCCGAAGTCTGGCTCGTTCCGGAGCCTTCAGT CTTCACCTGTCCCCAGACCGGAGTCCATCAATGA
Upstream 100 bases:
>100_bases ATCTCGTCCGTGGCGGCACCTTGCGCTTCGAGATGAGCGGCACGCCGAACAAGGACTTTGCGCGCCTGCCCGAACACCGC CCCAGCCGCACGCAAGCGGC
Downstream 100 bases:
>100_bases CCCTGCCTGCCCTTTCCCGTCGCACCGTGCTGTCGGGCTCGCTCCTTGCAGGCGCCGCCGCCTGCACGCCCAAGGCGGGC GGCCTTGCCTCCTCGCCTGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 757; Mature: 757
Protein sequence:
>757_residues MIAGAALALAVAAVLPAPLDLARPCTAGEAVASDLLRRRLAERGAGTGNCTAYLRLVARDDPTAEGFTIARSGRTLTISA RSRRGLVYGAGWVLGHMDGLSLPFAATVRDAPKQKVRGTQIGYRPKNNSYDAWTPEMLARQIEDFALWGANRIQIIAPRS DDAPTSPVMPVPPEKAVVAMAETAHRLGIEVAIFYPLLGDYDGGASDRAEADRLDALLGTLPAVDALYLPGGDPGHTQPT RLFPLAKRLSRVLRARFPRAELLISTQGFDAAALDAFFAETDRRPPWLSAVFVGPQTRIAASDHLRRLGGRYPVELYPDT AHAMQAQLPVPDWYPAFALVEGREPVNPRPAAMRAAFARMAPGTRGAVSYSEGVNDDWNVHQWLAMGWNPDADPAEIAAR HARTYFGTAGFAAIPAMLEDNWRGDPAGNEGIDRTLAFVDGLSPAPWAGWRVALYRYRAVQDALVRERWRRARARQAEAL YVLRQAPAIGAAAAAAGATHAFAKPETPRTAELLGRLVALADELRAAAGMQLSVERHGASDWRRGANLDRAQVLLDDREA TTRAVAAALALPDEAARTRALAAIGDPWGMAALVLHDDLGDPGNEPHLVRGAGEMADPQGWRTAIDGVNDHTPGEGWRLA EITYAEALYEHPLTLRYTGLAANRAYRLCYLRAGEDYALPLTLTANGRKLDAPAIRTANPQVVEIDLPRDIAATGTLDLV WQRPPGIGGGGRGRQIAEVWLVPEPSVFTCPQTGVHQ
Sequences:
>Translated_757_residues MIAGAALALAVAAVLPAPLDLARPCTAGEAVASDLLRRRLAERGAGTGNCTAYLRLVARDDPTAEGFTIARSGRTLTISA RSRRGLVYGAGWVLGHMDGLSLPFAATVRDAPKQKVRGTQIGYRPKNNSYDAWTPEMLARQIEDFALWGANRIQIIAPRS DDAPTSPVMPVPPEKAVVAMAETAHRLGIEVAIFYPLLGDYDGGASDRAEADRLDALLGTLPAVDALYLPGGDPGHTQPT RLFPLAKRLSRVLRARFPRAELLISTQGFDAAALDAFFAETDRRPPWLSAVFVGPQTRIAASDHLRRLGGRYPVELYPDT AHAMQAQLPVPDWYPAFALVEGREPVNPRPAAMRAAFARMAPGTRGAVSYSEGVNDDWNVHQWLAMGWNPDADPAEIAAR HARTYFGTAGFAAIPAMLEDNWRGDPAGNEGIDRTLAFVDGLSPAPWAGWRVALYRYRAVQDALVRERWRRARARQAEAL YVLRQAPAIGAAAAAAGATHAFAKPETPRTAELLGRLVALADELRAAAGMQLSVERHGASDWRRGANLDRAQVLLDDREA TTRAVAAALALPDEAARTRALAAIGDPWGMAALVLHDDLGDPGNEPHLVRGAGEMADPQGWRTAIDGVNDHTPGEGWRLA EITYAEALYEHPLTLRYTGLAANRAYRLCYLRAGEDYALPLTLTANGRKLDAPAIRTANPQVVEIDLPRDIAATGTLDLV WQRPPGIGGGGRGRQIAEVWLVPEPSVFTCPQTGVHQ >Mature_757_residues MIAGAALALAVAAVLPAPLDLARPCTAGEAVASDLLRRRLAERGAGTGNCTAYLRLVARDDPTAEGFTIARSGRTLTISA RSRRGLVYGAGWVLGHMDGLSLPFAATVRDAPKQKVRGTQIGYRPKNNSYDAWTPEMLARQIEDFALWGANRIQIIAPRS DDAPTSPVMPVPPEKAVVAMAETAHRLGIEVAIFYPLLGDYDGGASDRAEADRLDALLGTLPAVDALYLPGGDPGHTQPT RLFPLAKRLSRVLRARFPRAELLISTQGFDAAALDAFFAETDRRPPWLSAVFVGPQTRIAASDHLRRLGGRYPVELYPDT AHAMQAQLPVPDWYPAFALVEGREPVNPRPAAMRAAFARMAPGTRGAVSYSEGVNDDWNVHQWLAMGWNPDADPAEIAAR HARTYFGTAGFAAIPAMLEDNWRGDPAGNEGIDRTLAFVDGLSPAPWAGWRVALYRYRAVQDALVRERWRRARARQAEAL YVLRQAPAIGAAAAAAGATHAFAKPETPRTAELLGRLVALADELRAAAGMQLSVERHGASDWRRGANLDRAQVLLDDREA TTRAVAAALALPDEAARTRALAAIGDPWGMAALVLHDDLGDPGNEPHLVRGAGEMADPQGWRTAIDGVNDHTPGEGWRLA EITYAEALYEHPLTLRYTGLAANRAYRLCYLRAGEDYALPLTLTANGRKLDAPAIRTANPQVVEIDLPRDIAATGTLDLV WQRPPGIGGGGRGRQIAEVWLVPEPSVFTCPQTGVHQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 81622; Mature: 81622
Theoretical pI: Translated: 7.04; Mature: 7.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIAGAALALAVAAVLPAPLDLARPCTAGEAVASDLLRRRLAERGAGTGNCTAYLRLVARD CCCHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC DPTAEGFTIARSGRTLTISARSRRGLVYGAGWVLGHMDGLSLPFAATVRDAPKQKVRGTQ CCCCCCEEEEECCCEEEEEECCCCCEEEECCEEEECCCCCCCCCHHHHHCCCHHHHCCCC IGYRPKNNSYDAWTPEMLARQIEDFALWGANRIQIIAPRSDDAPTSPVMPVPPEKAVVAM CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHH AETAHRLGIEVAIFYPLLGDYDGGASDRAEADRLDALLGTLPAVDALYLPGGDPGHTQPT HHHHHHCCEEEEEEEEHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCH RLFPLAKRLSRVLRARFPRAELLISTQGFDAAALDAFFAETDRRPPWLSAVFVGPQTRIA HHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCEEEEEECCCCEEH ASDHLRRLGGRYPVELYPDTAHAMQAQLPVPDWYPAFALVEGREPVNPRPAAMRAAFARM HHHHHHHHCCCCCEEECCCHHHHHEECCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH APGTRGAVSYSEGVNDDWNVHQWLAMGWNPDADPAEIAARHARTYFGTAGFAAIPAMLED CCCCCCCEECCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHC NWRGDPAGNEGIDRTLAFVDGLSPAPWAGWRVALYRYRAVQDALVRERWRRARARQAEAL CCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YVLRQAPAIGAAAAAAGATHAFAKPETPRTAELLGRLVALADELRAAAGMQLSVERHGAS HHHHHCCCCCHHHHHCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCH DWRRGANLDRAQVLLDDREATTRAVAAALALPDEAARTRALAAIGDPWGMAALVLHDDLG HHHHCCCCCHHHEEECCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEEEECCCC DPGNEPHLVRGAGEMADPQGWRTAIDGVNDHTPGEGWRLAEITYAEALYEHPLTLRYTGL CCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHCCCEEEEECE AANRAYRLCYLRAGEDYALPLTLTANGRKLDAPAIRTANPQVVEIDLPRDIAATGTLDLV ECCCEEEEEEEECCCCEEEEEEEECCCCEECCCCEECCCCEEEEEECCCCCCCCCCEEEE WQRPPGIGGGGRGRQIAEVWLVPEPSVFTCPQTGVHQ EECCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCC >Mature Secondary Structure MIAGAALALAVAAVLPAPLDLARPCTAGEAVASDLLRRRLAERGAGTGNCTAYLRLVARD CCCHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC DPTAEGFTIARSGRTLTISARSRRGLVYGAGWVLGHMDGLSLPFAATVRDAPKQKVRGTQ CCCCCCEEEEECCCEEEEEECCCCCEEEECCEEEECCCCCCCCCHHHHHCCCHHHHCCCC IGYRPKNNSYDAWTPEMLARQIEDFALWGANRIQIIAPRSDDAPTSPVMPVPPEKAVVAM CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHH AETAHRLGIEVAIFYPLLGDYDGGASDRAEADRLDALLGTLPAVDALYLPGGDPGHTQPT HHHHHHCCEEEEEEEEHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCH RLFPLAKRLSRVLRARFPRAELLISTQGFDAAALDAFFAETDRRPPWLSAVFVGPQTRIA HHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCEEEEEECCCCEEH ASDHLRRLGGRYPVELYPDTAHAMQAQLPVPDWYPAFALVEGREPVNPRPAAMRAAFARM HHHHHHHHCCCCCEEECCCHHHHHEECCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH APGTRGAVSYSEGVNDDWNVHQWLAMGWNPDADPAEIAARHARTYFGTAGFAAIPAMLED CCCCCCCEECCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHC NWRGDPAGNEGIDRTLAFVDGLSPAPWAGWRVALYRYRAVQDALVRERWRRARARQAEAL CCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YVLRQAPAIGAAAAAAGATHAFAKPETPRTAELLGRLVALADELRAAAGMQLSVERHGAS HHHHHCCCCCHHHHHCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCH DWRRGANLDRAQVLLDDREATTRAVAAALALPDEAARTRALAAIGDPWGMAALVLHDDLG HHHHCCCCCHHHEEECCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEEEECCCC DPGNEPHLVRGAGEMADPQGWRTAIDGVNDHTPGEGWRLAEITYAEALYEHPLTLRYTGL CCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHCCCEEEEECE AANRAYRLCYLRAGEDYALPLTLTANGRKLDAPAIRTANPQVVEIDLPRDIAATGTLDLV ECCCEEEEEEEECCCCEEEEEEEECCCCEECCCCEECCCCEEEEEECCCCCCCCCCEEEE WQRPPGIGGGGRGRQIAEVWLVPEPSVFTCPQTGVHQ EECCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA