| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200369
Identifier: 87200369
GI number: 87200369
Start: 2502950
End: 2504809
Strand: Direct
Name: 87200369
Synonym: Saro_2356
Alternate gene names: NA
Gene position: 2502950-2504809 (Clockwise)
Preceding gene: 87200368
Following gene: 87200370
Centisome position: 70.28
GC content: 66.72
Gene sequence:
>1860_bases GTGGCACTGACGCGTCGCGTTTCGACCTGCGCGATCGCACTGGCGATCATCCTTGCCGGGTGCGCACCGGCGACGGCCCG GACAGGCGCTTCGGCCGACACGATACCGACTGCCCGGATCGACGCGGCACCGCCTCCCCTGCCCGTCACTTCGGCCAACG TGGCGCTGGACCGCCTGTTCGCGGAAGATGCGCAAGTCTCGATGCAACTCGACCCGCTCGGCTCGCTGGAGCAGGGACAC AAGGTCCCGGTCGAGCGGTTCGTGCTGCTGTTCACCCCGGAACTCATCCGCGAACGGCGCGAGGCGAATGCCCGGTCCCT GGCCGAGCTGGCCAGGATCGATCCGGCAAAGCTCGATCGCAACCGCCGCATCTCGCGCGCAGTATTCGAGGATGCAAAGC GGAACGAACAGGCGCTTCTCGCACCCGACGTCCAGCCACTTTTCGCGGCGCAGCCCTTCAACCACTTCGGCGGCTTCCAT GTCGCCTATCCGGAGCTTTCCGCACCGGGCAGCGGCATCGCACTCGACACGGTCGAGGATTATCGGCTGCTCATTGCGCG GCACAAGGCACTGCCGCAGGTCTTCGGCCAGGCCATCGCCCGGTTCCGGGAAGGCATGGCCAGCGGGGTTACCGAGCCTC GGCTGACAGTCGACAACATGATCGTGCAGATCGACGCGCTGCTGGCCCAGCCGGTAGACCGTTCGCCATTCCTGGCTCCT GCGCGGCAGTTTCCGGACGATGTGCCGGCAGCCGAACGCGCCAGGCTGGCGCGGGAGCTGGCGACGGTGGCGCGGCGCGA GATCTATCCGGCCTATCGGACGCTGCGCCGCTTCCTAGCCAACGAATACCGGCCCGTGGCGCGCGAGCAGGTCGGCCTTT CGGCGCTTCCAGACGGCGAACGGCTATACCGACTGCTGGCGCGGCAGCATACCACTGTGGACCTCGACCCGGCGGCGGTG CACGAACTGGGTCTATCTGAGGTGGCACGCATCCAGTCCGAAATGGAGGACGTGAAGCGCCAGCTCGGTTTCCAGGGCCC GCTGCGCAGCTTCTTCGACCACATCCGGACCGACCCGAAGTACCACCCGCACACGGAGCGGGAACTGGCGGAGGGGTTCC GCGCCGTGGGCCGCAAGGTCGACGCGCTGGCGCCGCAGTACTTCCTGCACCTGCCCCTCACACCGCTGCTGATACAGCCC TACCCCGCCTACCGCGCACGGTTCGAGGCAGGCGGCAGCTATGCGCAGGGATCGGCTGACGGGAAGCAACCCGGCGTATT CTTCTACAATACCTATGACCTGAAGAGCCGCTTCCTGACCGGCGTTACCACGCTCTATCTCCATGAAGGCGCGCCGGGGC ATCACTTCCAGATCAGCCTGGCGCAGGAAAACGCGAACCTCCCGGACTTCCAGCGCTTTGGCGGCAACACGGCCTATATC GAAGGCTGGGCGCTCTATGCGGAGACGCTGGGCTACGAGATGGGGTTCTACAAGGACCCGATGCAGCACTGGGGCACGCT CGACGACGAAATGCTGCGCGCGATGCGGCTCGTCGTGGACACCGGCCTTCACACCAGGGGATGGAGCCGAGAAGAAGCGG TCGATTACATGCTGGCCAATTCCGGCATGGGCCGCACCGATGCGCAGGCCGAAGTCGACCGCTACATCGCCAACCCGGGT CAGGCGCTGGCCTACAAGATCGGAGCGCTGACGATCCAGCGCCTGCGCCGGGAAGCGGAGGCGGCACTGGGCCGGCGCTT CGACATCCGCCAGTTCCACGACCAGATTCTGGGGAGCGGCGCGCTGCCGATGCCGGTTCTCGAGGCCAAGGTGCGGGGTT GGATCGCCGCCACGCGTTGA
Upstream 100 bases:
>100_bases TGAAGCCCGACGGAACGCCAAACGCCAATGCGATGCATGCCGGCATGCCGGTCGTGCGAGGCACCAAGTACGTGCTGACC AAGTGGTACAGGTCGCGCCC
Downstream 100 bases:
>100_bases TGCTTGCCAGATGGGGCGACGGCTGCTCTTCTCGGCATGTGCGATCCGATGACGGGGGAATGGATGCTGGGGTACTTCAC GGCGGCGCTGCCGCATTTCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 619; Mature: 618
Protein sequence:
>619_residues MALTRRVSTCAIALAIILAGCAPATARTGASADTIPTARIDAAPPPLPVTSANVALDRLFAEDAQVSMQLDPLGSLEQGH KVPVERFVLLFTPELIRERREANARSLAELARIDPAKLDRNRRISRAVFEDAKRNEQALLAPDVQPLFAAQPFNHFGGFH VAYPELSAPGSGIALDTVEDYRLLIARHKALPQVFGQAIARFREGMASGVTEPRLTVDNMIVQIDALLAQPVDRSPFLAP ARQFPDDVPAAERARLARELATVARREIYPAYRTLRRFLANEYRPVAREQVGLSALPDGERLYRLLARQHTTVDLDPAAV HELGLSEVARIQSEMEDVKRQLGFQGPLRSFFDHIRTDPKYHPHTERELAEGFRAVGRKVDALAPQYFLHLPLTPLLIQP YPAYRARFEAGGSYAQGSADGKQPGVFFYNTYDLKSRFLTGVTTLYLHEGAPGHHFQISLAQENANLPDFQRFGGNTAYI EGWALYAETLGYEMGFYKDPMQHWGTLDDEMLRAMRLVVDTGLHTRGWSREEAVDYMLANSGMGRTDAQAEVDRYIANPG QALAYKIGALTIQRLRREAEAALGRRFDIRQFHDQILGSGALPMPVLEAKVRGWIAATR
Sequences:
>Translated_619_residues MALTRRVSTCAIALAIILAGCAPATARTGASADTIPTARIDAAPPPLPVTSANVALDRLFAEDAQVSMQLDPLGSLEQGH KVPVERFVLLFTPELIRERREANARSLAELARIDPAKLDRNRRISRAVFEDAKRNEQALLAPDVQPLFAAQPFNHFGGFH VAYPELSAPGSGIALDTVEDYRLLIARHKALPQVFGQAIARFREGMASGVTEPRLTVDNMIVQIDALLAQPVDRSPFLAP ARQFPDDVPAAERARLARELATVARREIYPAYRTLRRFLANEYRPVAREQVGLSALPDGERLYRLLARQHTTVDLDPAAV HELGLSEVARIQSEMEDVKRQLGFQGPLRSFFDHIRTDPKYHPHTERELAEGFRAVGRKVDALAPQYFLHLPLTPLLIQP YPAYRARFEAGGSYAQGSADGKQPGVFFYNTYDLKSRFLTGVTTLYLHEGAPGHHFQISLAQENANLPDFQRFGGNTAYI EGWALYAETLGYEMGFYKDPMQHWGTLDDEMLRAMRLVVDTGLHTRGWSREEAVDYMLANSGMGRTDAQAEVDRYIANPG QALAYKIGALTIQRLRREAEAALGRRFDIRQFHDQILGSGALPMPVLEAKVRGWIAATR >Mature_618_residues ALTRRVSTCAIALAIILAGCAPATARTGASADTIPTARIDAAPPPLPVTSANVALDRLFAEDAQVSMQLDPLGSLEQGHK VPVERFVLLFTPELIRERREANARSLAELARIDPAKLDRNRRISRAVFEDAKRNEQALLAPDVQPLFAAQPFNHFGGFHV AYPELSAPGSGIALDTVEDYRLLIARHKALPQVFGQAIARFREGMASGVTEPRLTVDNMIVQIDALLAQPVDRSPFLAPA RQFPDDVPAAERARLARELATVARREIYPAYRTLRRFLANEYRPVAREQVGLSALPDGERLYRLLARQHTTVDLDPAAVH ELGLSEVARIQSEMEDVKRQLGFQGPLRSFFDHIRTDPKYHPHTERELAEGFRAVGRKVDALAPQYFLHLPLTPLLIQPY PAYRARFEAGGSYAQGSADGKQPGVFFYNTYDLKSRFLTGVTTLYLHEGAPGHHFQISLAQENANLPDFQRFGGNTAYIE GWALYAETLGYEMGFYKDPMQHWGTLDDEMLRAMRLVVDTGLHTRGWSREEAVDYMLANSGMGRTDAQAEVDRYIANPGQ ALAYKIGALTIQRLRREAEAALGRRFDIRQFHDQILGSGALPMPVLEAKVRGWIAATR
Specific function: Unknown
COG id: COG4805
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68877; Mature: 68746
Theoretical pI: Translated: 7.55; Mature: 7.55
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALTRRVSTCAIALAIILAGCAPATARTGASADTIPTARIDAAPPPLPVTSANVALDRLF CCCHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH AEDAQVSMQLDPLGSLEQGHKVPVERFVLLFTPELIRERREANARSLAELARIDPAKLDR HHCCCEEEEECCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHCCHHHHHHHHHCCHHHHCC NRRISRAVFEDAKRNEQALLAPDVQPLFAAQPFNHFGGFHVAYPELSAPGSGIALDTVED CHHHHHHHHHHHHCCCCEEECCCCCHHHHCCCHHHCCCEEEECCCCCCCCCCEEECCHHH YRLLIARHKALPQVFGQAIARFREGMASGVTEPRLTVDNMIVQIDALLAQPVDRSPFLAP HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC ARQFPDDVPAAERARLARELATVARREIYPAYRTLRRFLANEYRPVAREQVGLSALPDGE HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHH RLYRLLARQHTTVDLDPAAVHELGLSEVARIQSEMEDVKRQLGFQGPLRSFFDHIRTDPK HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC YHPHTERELAEGFRAVGRKVDALAPQYFLHLPLTPLLIQPYPAYRARFEAGGSYAQGSAD CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHCCCCHHHHHHHHCCCCCCCCCCC GKQPGVFFYNTYDLKSRFLTGVTTLYLHEGAPGHHFQISLAQENANLPDFQRFGGNTAYI CCCCCEEEEECHHHHHHHHHHHHEEEEECCCCCCEEEEEEECCCCCCCHHHHHCCCEEEE EGWALYAETLGYEMGFYKDPMQHWGTLDDEMLRAMRLVVDTGLHTRGWSREEAVDYMLAN EHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC SGMGRTDAQAEVDRYIANPGQALAYKIGALTIQRLRREAEAALGRRFDIRQFHDQILGSG CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC ALPMPVLEAKVRGWIAATR CCCHHHHHHHHHHHHCCCC >Mature Secondary Structure ALTRRVSTCAIALAIILAGCAPATARTGASADTIPTARIDAAPPPLPVTSANVALDRLF CCHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH AEDAQVSMQLDPLGSLEQGHKVPVERFVLLFTPELIRERREANARSLAELARIDPAKLDR HHCCCEEEEECCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHCCHHHHHHHHHCCHHHHCC NRRISRAVFEDAKRNEQALLAPDVQPLFAAQPFNHFGGFHVAYPELSAPGSGIALDTVED CHHHHHHHHHHHHCCCCEEECCCCCHHHHCCCHHHCCCEEEECCCCCCCCCCEEECCHHH YRLLIARHKALPQVFGQAIARFREGMASGVTEPRLTVDNMIVQIDALLAQPVDRSPFLAP HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC ARQFPDDVPAAERARLARELATVARREIYPAYRTLRRFLANEYRPVAREQVGLSALPDGE HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHH RLYRLLARQHTTVDLDPAAVHELGLSEVARIQSEMEDVKRQLGFQGPLRSFFDHIRTDPK HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC YHPHTERELAEGFRAVGRKVDALAPQYFLHLPLTPLLIQPYPAYRARFEAGGSYAQGSAD CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHCCCCHHHHHHHHCCCCCCCCCCC GKQPGVFFYNTYDLKSRFLTGVTTLYLHEGAPGHHFQISLAQENANLPDFQRFGGNTAYI CCCCCEEEEECHHHHHHHHHHHHEEEEECCCCCCEEEEEEECCCCCCCHHHHHCCCEEEE EGWALYAETLGYEMGFYKDPMQHWGTLDDEMLRAMRLVVDTGLHTRGWSREEAVDYMLAN EHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC SGMGRTDAQAEVDRYIANPGQALAYKIGALTIQRLRREAEAALGRRFDIRQFHDQILGSG CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC ALPMPVLEAKVRGWIAATR CCCHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA