| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is 87200356
Identifier: 87200356
GI number: 87200356
Start: 2489181
End: 2489969
Strand: Direct
Name: 87200356
Synonym: Saro_2342
Alternate gene names: NA
Gene position: 2489181-2489969 (Clockwise)
Preceding gene: 87200355
Following gene: 87200363
Centisome position: 69.89
GC content: 69.84
Gene sequence:
>789_bases ATGACGCGGCGGCATCTGACGTTCGCTTGCGAGGGCGCGACGCTGGTCGGCACGCTCGACATCGACGGGGCGAGCCATGG CACGGGGCTGCTAATTGTTTCGGGGGGCAACGAACTGCGGGCAGGCGCATGGTCTGGACAGGCACAGCTTGCAACCAGGC TGGCGCACGCCGGGTTCCCGGTCTTTCGATACGACCGGCGTGGCGTGGGCGACAGCGAGGGCGAGAACCTGTCGTTTCGC GGCGCCCTGCCCGACATCGCGGCGGCGCTGGCGGCCTTCCGCAGCGCCGCGCCGCACCTTTCGCGGATCGTCGCGTTCGG AAATTGCGATGCGGCGGCGGCGCTCATGCTGTTTGGCGCGGAGCTTCAGGTCGACGGGCTGGTGCTGGCCAATCCCTGGA CGATCGACGGCGAGGAAGCACCGGATGCCATGCCGGCCTCGGCCATTCGCAGCCGCTACCTGGGCAAGCTGGCCAGCCCG CGAGAGATCTGGCGGCTGCTTTCGGGCGGCGTGAACCTCGGCAAGTTGGCCAGGGGCTTGCGCACCGCCGCAGGGCATTC CCCTGCCCACGCCGGACTGGCGCAGGACATGAAGGCCGGACTCGACGCGTTCGCCGGTCCCGTGGCGATCCTGCTGGCGA GCCGGGATCGCACCGCGCAGATGTTCGAGGAGGCCTGGGGCGGCGAAGACCCGCGCATCGCGCGGATCGACAGCGCATCG CACAGCTTCTCCGACGAGGCCGCGCGCGAATGGCTCCACGCGCGGCTGGTCGAAGCGCTTACGCGATAA
Upstream 100 bases:
>100_bases GCGAACTCGGCGGCGCCGGGCTGTGGCTGCGGGCAGAACCCGCGGCGGCGCCCGAGCAATCGGCCGCGCTCGCACGCCTC ATCGCGCAGGACCTTGGCGA
Downstream 100 bases:
>100_bases CGGCCTGTGCGGCCTTGAAGTCCAGTTCGGCGAGGAAGCGTTCCGCGTCGAGCGCCGCCATGCAGCCCGTTCCGGCAGCG GTAACCGCCTGGCGATAGGT
Product: esterase/lipase/thioesterase family protein
Products: NA
Alternate protein names: Alpha/Beta Hydrolase Fold; Esterase/Lipase/Thioesterase
Number of amino acids: Translated: 262; Mature: 261
Protein sequence:
>262_residues MTRRHLTFACEGATLVGTLDIDGASHGTGLLIVSGGNELRAGAWSGQAQLATRLAHAGFPVFRYDRRGVGDSEGENLSFR GALPDIAAALAAFRSAAPHLSRIVAFGNCDAAAALMLFGAELQVDGLVLANPWTIDGEEAPDAMPASAIRSRYLGKLASP REIWRLLSGGVNLGKLARGLRTAAGHSPAHAGLAQDMKAGLDAFAGPVAILLASRDRTAQMFEEAWGGEDPRIARIDSAS HSFSDEAAREWLHARLVEALTR
Sequences:
>Translated_262_residues MTRRHLTFACEGATLVGTLDIDGASHGTGLLIVSGGNELRAGAWSGQAQLATRLAHAGFPVFRYDRRGVGDSEGENLSFR GALPDIAAALAAFRSAAPHLSRIVAFGNCDAAAALMLFGAELQVDGLVLANPWTIDGEEAPDAMPASAIRSRYLGKLASP REIWRLLSGGVNLGKLARGLRTAAGHSPAHAGLAQDMKAGLDAFAGPVAILLASRDRTAQMFEEAWGGEDPRIARIDSAS HSFSDEAAREWLHARLVEALTR >Mature_261_residues TRRHLTFACEGATLVGTLDIDGASHGTGLLIVSGGNELRAGAWSGQAQLATRLAHAGFPVFRYDRRGVGDSEGENLSFRG ALPDIAAALAAFRSAAPHLSRIVAFGNCDAAAALMLFGAELQVDGLVLANPWTIDGEEAPDAMPASAIRSRYLGKLASPR EIWRLLSGGVNLGKLARGLRTAAGHSPAHAGLAQDMKAGLDAFAGPVAILLASRDRTAQMFEEAWGGEDPRIARIDSASH SFSDEAAREWLHARLVEALTR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27588; Mature: 27457
Theoretical pI: Translated: 6.72; Mature: 6.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRRHLTFACEGATLVGTLDIDGASHGTGLLIVSGGNELRAGAWSGQAQLATRLAHAGFP CCCCEEEEEECCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCC VFRYDRRGVGDSEGENLSFRGALPDIAAALAAFRSAAPHLSRIVAFGNCDAAAALMLFGA EEEECCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHCC ELQVDGLVLANPWTIDGEEAPDAMPASAIRSRYLGKLASPREIWRLLSGGVNLGKLARGL CEEECCEEEECCEECCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHH RTAAGHSPAHAGLAQDMKAGLDAFAGPVAILLASRDRTAQMFEEAWGGEDPRIARIDSAS HHHCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHCCCCCCEEEECCCC HSFSDEAAREWLHARLVEALTR CCCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TRRHLTFACEGATLVGTLDIDGASHGTGLLIVSGGNELRAGAWSGQAQLATRLAHAGFP CCCEEEEEECCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCC VFRYDRRGVGDSEGENLSFRGALPDIAAALAAFRSAAPHLSRIVAFGNCDAAAALMLFGA EEEECCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHCC ELQVDGLVLANPWTIDGEEAPDAMPASAIRSRYLGKLASPREIWRLLSGGVNLGKLARGL CEEECCEEEECCEECCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHH RTAAGHSPAHAGLAQDMKAGLDAFAGPVAILLASRDRTAQMFEEAWGGEDPRIARIDSAS HHHCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHCCCCCCEEEECCCC HSFSDEAAREWLHARLVEALTR CCCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA