| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200224
Identifier: 87200224
GI number: 87200224
Start: 2352836
End: 2353774
Strand: Reverse
Name: 87200224
Synonym: Saro_2209
Alternate gene names: NA
Gene position: 2353774-2352836 (Counterclockwise)
Preceding gene: 87200226
Following gene: 87200223
Centisome position: 66.09
GC content: 62.09
Gene sequence:
>939_bases GTGGAGGCTGCACGGGGAGGGCACCTCAACTGGAGTACGTCGATGCCCCCGTTAGACAAACCTCATCAACTCGAACGCCG CGCCCGCGCGATCGTCGAAAGCCTTCAGGGTACATGGAGTCGGGGCAAAGGCATGTGCTGCTGCCCGGCGCATGATGACC GAACTCCCTCTTTGAGCGTGACACTGGGAAGAAAGGCGATCCTGTTTCATTGCTTCGCGGGATGCTCGAACGAGGAGGTC ATAGCGGCACTGGACCGCCAGGGTGTTCGCAGCCGTGACCTGTTCGATGGCTCTAGTGCCGTGGTCGCTGATCGACAGGA AAATAGGGCCTTCGATTCCAACGCGCGGCGTTTGTGGCAATCGGCGACGGCGATCTCCGACAGCCCTGCCGAAGGATACC TCGCACAGCGCGGGATCCTGCGTGCCTCTGATCAGCTCCGTTACCTCGAGCGCACGCCGCTCGGACCATGTGGCGCGGTC CAGTTCCTCCCTGCAATGTTGGCGGCCGTCACGACTGACATCGGCATAATAGCGGTGCACAGGACGTTTATTGATACTGC GAGCGGCAAGTTGGCGGGTTTCGAGCGTCCCAAGCGTGCGCTGGGACGCCTCAGCTGTGGTGCTGTCAGACTTGCCCCGC CAGCCGCGGGCCGGTTGGGCCTTGCCGAAGGTATCGAAAGCGCCCTGTCAGCCATGCAGCTGTTTGGGATTCCTTGCTGG GCAACGCTCGGGAACGAGCGGTTCGGCCTCGTCGCGATTCCCGAGAGTGTGCGCGAGCTCCACTTGTTCATCGACAATGA TCCGGGGGGCGAGCTCGCGGATCAGCGCGCACGAAAGGCCTATTCTGCATCAGGCCGTGTGATCCACTTGCGAGCACCAG CGTCGACCGGTCTCGACTGGAACGATGAACTCAAGGCAAGGCTCGCTCGGCAAACCTGA
Upstream 100 bases:
>100_bases GATAGCTTTCATTGTCATTTTTCGATCCTTCCATAGCCGAATCGAGTGAGAACATATATAGAACAAGCGGCGTAGGAAAT TGGTTTGGCGCGAGTGCAGA
Downstream 100 bases:
>100_bases TCAGCGAGCCAGAGGGGAGGGGGCCTTCGGCTGATTGTGGCCTGCGAGACGCAGGACCTCGTCAGGAGGTTTTCCATGTC CAACTCTTCCCTCGCTTTCG
Product: genomic island protein
Products: NA
Alternate protein names: Genomic Island Protein
Number of amino acids: Translated: 312; Mature: 312
Protein sequence:
>312_residues MEAARGGHLNWSTSMPPLDKPHQLERRARAIVESLQGTWSRGKGMCCCPAHDDRTPSLSVTLGRKAILFHCFAGCSNEEV IAALDRQGVRSRDLFDGSSAVVADRQENRAFDSNARRLWQSATAISDSPAEGYLAQRGILRASDQLRYLERTPLGPCGAV QFLPAMLAAVTTDIGIIAVHRTFIDTASGKLAGFERPKRALGRLSCGAVRLAPPAAGRLGLAEGIESALSAMQLFGIPCW ATLGNERFGLVAIPESVRELHLFIDNDPGGELADQRARKAYSASGRVIHLRAPASTGLDWNDELKARLARQT
Sequences:
>Translated_312_residues MEAARGGHLNWSTSMPPLDKPHQLERRARAIVESLQGTWSRGKGMCCCPAHDDRTPSLSVTLGRKAILFHCFAGCSNEEV IAALDRQGVRSRDLFDGSSAVVADRQENRAFDSNARRLWQSATAISDSPAEGYLAQRGILRASDQLRYLERTPLGPCGAV QFLPAMLAAVTTDIGIIAVHRTFIDTASGKLAGFERPKRALGRLSCGAVRLAPPAAGRLGLAEGIESALSAMQLFGIPCW ATLGNERFGLVAIPESVRELHLFIDNDPGGELADQRARKAYSASGRVIHLRAPASTGLDWNDELKARLARQT >Mature_312_residues MEAARGGHLNWSTSMPPLDKPHQLERRARAIVESLQGTWSRGKGMCCCPAHDDRTPSLSVTLGRKAILFHCFAGCSNEEV IAALDRQGVRSRDLFDGSSAVVADRQENRAFDSNARRLWQSATAISDSPAEGYLAQRGILRASDQLRYLERTPLGPCGAV QFLPAMLAAVTTDIGIIAVHRTFIDTASGKLAGFERPKRALGRLSCGAVRLAPPAAGRLGLAEGIESALSAMQLFGIPCW ATLGNERFGLVAIPESVRELHLFIDNDPGGELADQRARKAYSASGRVIHLRAPASTGLDWNDELKARLARQT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33723; Mature: 33723
Theoretical pI: Translated: 8.78; Mature: 8.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEAARGGHLNWSTSMPPLDKPHQLERRARAIVESLQGTWSRGKGMCCCPAHDDRTPSLSV CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEE TLGRKAILFHCFAGCSNEEVIAALDRQGVRSRDLFDGSSAVVADRQENRAFDSNARRLWQ EECHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCEEEECCHHCCCHHHHHHHHHH SATAISDSPAEGYLAQRGILRASDQLRYLERTPLGPCGAVQFLPAMLAAVTTDIGIIAVH HHHHCCCCCCCCHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHEEEH RTFIDTASGKLAGFERPKRALGRLSCGAVRLAPPAAGRLGLAEGIESALSAMQLFGIPCW HHHHHCCCCCCCCCCCHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCE ATLGNERFGLVAIPESVRELHLFIDNDPGGELADQRARKAYSASGRVIHLRAPASTGLDW EECCCCCEEEEECCHHHEEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCC NDELKARLARQT CHHHHHHHHCCC >Mature Secondary Structure MEAARGGHLNWSTSMPPLDKPHQLERRARAIVESLQGTWSRGKGMCCCPAHDDRTPSLSV CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEE TLGRKAILFHCFAGCSNEEVIAALDRQGVRSRDLFDGSSAVVADRQENRAFDSNARRLWQ EECHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCEEEECCHHCCCHHHHHHHHHH SATAISDSPAEGYLAQRGILRASDQLRYLERTPLGPCGAVQFLPAMLAAVTTDIGIIAVH HHHHCCCCCCCCHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHEEEH RTFIDTASGKLAGFERPKRALGRLSCGAVRLAPPAAGRLGLAEGIESALSAMQLFGIPCW HHHHHCCCCCCCCCCCHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCE ATLGNERFGLVAIPESVRELHLFIDNDPGGELADQRARKAYSASGRVIHLRAPASTGLDW EECCCCCEEEEECCHHHEEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCC NDELKARLARQT CHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA