| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200218
Identifier: 87200218
GI number: 87200218
Start: 2343959
End: 2344807
Strand: Reverse
Name: 87200218
Synonym: Saro_2203
Alternate gene names: NA
Gene position: 2344807-2343959 (Counterclockwise)
Preceding gene: 87200219
Following gene: 87200213
Centisome position: 65.84
GC content: 61.37
Gene sequence:
>849_bases ATGAGGAGTGATCCCACTACCCCAAGCGCGTGGGCCAATACCCTCGTGACGATGTGGGGGCCGCGGTTCCCGGTAGATGT GCGGCAAATCGCGCTCGAATACTCCAAGCGTTTCAGCGATCCCGTCCTGGACATCATTGAAGCGCCGGTGCCGAGCTTCG AGGGCGCGCTTGCTCCGCTCAAAAAGCGTGGCGGGTGGGCCATCCTGTATAATCCGGGCATCCGCTCGGCAGGGCGGATT AATTACACCCTCGGGCACGAATGGGGACATTACCTGTGTCACCGCCAGCAATCGCCCGCTGGATTCGAGTGTGGTGAGAG CGACGTGCTGGGCGGATCGCGGCAGCAGGAGCGGGAGGCAGATAAGTTCGCATCCTATCTGTTGATGCCGCTCACCGATT TCCGAGCCCAAGTAGGTAAACAGCGCATGACTCTGGACCTCTTGAAGCACTGCGCTGATCGCTATGATGTATCGCTGACG GCCGCTGCGTTAAAGTGGCTGGAAAGCACCGGTCTGTGCGCCGCCGTTGTGGTCGCCACCAACGGCTTCGTGTTGTGGGG CCGCCGGAGTGCAGCAGCGGGCCGCGCTCGCATCTTTTTCCCATCCGGCATGGAATTGCCGCGAGGGTCTCTCGCCGCAG GAAGCGGTGGCTCATCTCCCCCGCCCGAGGGGCAGGACCTGCCGCCGGGCGTCTGGTGGAACCGGCCGGTGCGCGAAGTC GCAATTTTTGCTGACCATTACGAAATGACAATCTCGTTGCTTATCTTTGAGGACCACGGCGTGTTGCCCGACGGCTGGGA AGACGATGAGGTCGAGGACACGGTTGATCGCTTTGCGCTGAGGAAATAG
Upstream 100 bases:
>100_bases CCGACCGAGGATGTGGAAGACACAGCATTCTTTCATCGATTTCAGAAAGCCGATCCCGATGTGAAGGCGAAGCTCAAGCG GATTCTGGACGTGCTGGACG
Downstream 100 bases:
>100_bases ACAGCGATCGCCGACTTTGCTGTCTGCCCGCTCCAGAGCGCCCAAGCAGCAATAGCCGACATTGGGAGCGCACCTGTGTT TCCGGCACATCCACGACAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 282; Mature: 282
Protein sequence:
>282_residues MRSDPTTPSAWANTLVTMWGPRFPVDVRQIALEYSKRFSDPVLDIIEAPVPSFEGALAPLKKRGGWAILYNPGIRSAGRI NYTLGHEWGHYLCHRQQSPAGFECGESDVLGGSRQQEREADKFASYLLMPLTDFRAQVGKQRMTLDLLKHCADRYDVSLT AAALKWLESTGLCAAVVVATNGFVLWGRRSAAAGRARIFFPSGMELPRGSLAAGSGGSSPPPEGQDLPPGVWWNRPVREV AIFADHYEMTISLLIFEDHGVLPDGWEDDEVEDTVDRFALRK
Sequences:
>Translated_282_residues MRSDPTTPSAWANTLVTMWGPRFPVDVRQIALEYSKRFSDPVLDIIEAPVPSFEGALAPLKKRGGWAILYNPGIRSAGRI NYTLGHEWGHYLCHRQQSPAGFECGESDVLGGSRQQEREADKFASYLLMPLTDFRAQVGKQRMTLDLLKHCADRYDVSLT AAALKWLESTGLCAAVVVATNGFVLWGRRSAAAGRARIFFPSGMELPRGSLAAGSGGSSPPPEGQDLPPGVWWNRPVREV AIFADHYEMTISLLIFEDHGVLPDGWEDDEVEDTVDRFALRK >Mature_282_residues MRSDPTTPSAWANTLVTMWGPRFPVDVRQIALEYSKRFSDPVLDIIEAPVPSFEGALAPLKKRGGWAILYNPGIRSAGRI NYTLGHEWGHYLCHRQQSPAGFECGESDVLGGSRQQEREADKFASYLLMPLTDFRAQVGKQRMTLDLLKHCADRYDVSLT AAALKWLESTGLCAAVVVATNGFVLWGRRSAAAGRARIFFPSGMELPRGSLAAGSGGSSPPPEGQDLPPGVWWNRPVREV AIFADHYEMTISLLIFEDHGVLPDGWEDDEVEDTVDRFALRK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31204; Mature: 31204
Theoretical pI: Translated: 5.97; Mature: 5.97
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSDPTTPSAWANTLVTMWGPRFPVDVRQIALEYSKRFSDPVLDIIEAPVPSFEGALAPL CCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHH KKRGGWAILYNPGIRSAGRINYTLGHEWGHYLCHRQQSPAGFECGESDVLGGSRQQEREA HHCCCEEEEECCCCCCCCEEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH DKFASYLLMPLTDFRAQVGKQRMTLDLLKHCADRYDVSLTAAALKWLESTGLCAAVVVAT HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEEC NGFVLWGRRSAAAGRARIFFPSGMELPRGSLAAGSGGSSPPPEGQDLPPGVWWNRPVREV CCEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH AIFADHYEMTISLLIFEDHGVLPDGWEDDEVEDTVDRFALRK HHHHCCEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCC >Mature Secondary Structure MRSDPTTPSAWANTLVTMWGPRFPVDVRQIALEYSKRFSDPVLDIIEAPVPSFEGALAPL CCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHH KKRGGWAILYNPGIRSAGRINYTLGHEWGHYLCHRQQSPAGFECGESDVLGGSRQQEREA HHCCCEEEEECCCCCCCCEEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH DKFASYLLMPLTDFRAQVGKQRMTLDLLKHCADRYDVSLTAAALKWLESTGLCAAVVVAT HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEEC NGFVLWGRRSAAAGRARIFFPSGMELPRGSLAAGSGGSSPPPEGQDLPPGVWWNRPVREV CCEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH AIFADHYEMTISLLIFEDHGVLPDGWEDDEVEDTVDRFALRK HHHHCCEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA