| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is traI [H]
Identifier: 87200199
GI number: 87200199
Start: 2324303
End: 2325931
Strand: Reverse
Name: traI [H]
Synonym: Saro_2183
Alternate gene names: 87200199
Gene position: 2325931-2324303 (Counterclockwise)
Preceding gene: 87200200
Following gene: 87200198
Centisome position: 65.31
GC content: 65.44
Gene sequence:
>1629_bases ATGCTGTCGGTAGCCAATGTCCGCACCGCCGGCGGGGCGGCCAACTACTTCGCTGCCGACAATTACTACACGCGGGCTGA TGCCGATCGCTCGGGTGAATGGCTGGGCAACGGCGCTGCCGCGCTCGGGCTCAAGGGGGCCGTCGACGCGCGGCAATTCG AGGCGGTCCTTAAGGGACTGCTGCCCGATGGTAGCCGCGTCGGCAGTGACAACCGGGCGCACCGGGCGGGGACCGATCTC ACCTTTTCGATGCCGAAAAGCTGGTCGGTCCTTGCTCTGGTGGGCGGCGACAAGAGGATCCTCGATGCCTACGCCGCGGC TGTCCGGGAAACCCTGCGCTGGGCCGAGAAGAACCTTGCCGAGACCCGGATGGAGGTTCGGGGCAGAGAGCGTGCGGTCC AGACCGGCAACCTTGCGATCGCGCTCTTCCAGCACGACACCAACCGCAACCAGGAGCCCAACGCCCACTTCCATGCCGTC ATTGCCAATGTGACGAGAGGGGCCGATGGCAAATGGCGGGCGCTGCGCAATGACAAGCTCTGGCAGCACAATACTTTGCT CAATGCCATGACGATGGCGCGGTTTCGTCTGAGCGTCGAGAAGCTCGGCTACGAGGTCGGGGAGTTCGGCAAGCACGGCA ATTTCGAGGCCGTCGGTGTGCCCAAAGACGTGCGCGATGCCTTCAGTTCGCGGCGGGCGGAGATTCTCGACCGCCTGGCA ACGATGGAAGGAAGGGGGCTCGCTGCTCGCAACGCAGCAAACCTCATGACCCGGGCAGACAAGGGGCGGATCGAGGATCG CGATGCGCTGCGGCAGCAGTGGCGGGATACGTCCACAAGGCTGGGCTTTGACCCCGCCATGGTCATTGCCCGGTCCAATG CTCGCAGCGCGCAGGACCTTGGCAATTTGACTGGCGTTGGGTCCACGATGCGCGCGATAGTCCGCAATGCTCAGGCCCTT GCAACCTCCTTGGCCGAGCGCCTCGGCCTGCGGGAAGGCGACCCGCTGATACCGGCCCGGCTGACCAATCGCAGTGTCGA GCAGGTCGCTGCAATTCATGCAGTCGCCTCGGCTGTGCGGCATCTGGGCGAGCGGGAGGCGGCCTTCACCCGGGCCGAAA TCTACCGTGCAGCGCTTGGCTTTGCGCTCCCAACCTCGCTCGCTGACATCGAGCAGCGCGTCGACCAGCTGCTCCGCCAG GGACATCTGGAGAAGGGCAGGGGTGCCGACCGGGAACTGCTGACGACACGCGATGCCATCAGTCTCGAACAGCGCATCAT CGCCGGGGTTGAAGACGGGCGCGGCACCGCGCCGGCGATTGTTTCTCCCGACATTGCCGGGTCCCGGCTGCAGGCCCTGT CCCAGATCAAATACGGGCTCACCTTGAACGCTGGACAGGAAGGGGCAGGGCGCCTGCTGCTTGGCTCGAACAACCGGATC GTCGCGATCCAGGGCGTCGCGGGCGCAGGCAAGAGCACGGTCCTCAAACCTGTCGCCGATATCCTGCGCGAGGAGGGCAG GAGTGTGCTCGGGCTGTCGAAGCCGCCGCAGCCTGGTTGTCGCTTTCGACAGCCGAGCGCGAGGCAACCGCGATTTATGC CTCAGGCCGAAACTTGCGCAGCGCCGTGA
Upstream 100 bases:
>100_bases GGTTTGCGGGAGCACGAGCCTCCGCCGATCACTGGTCCCGATCTTGGTGACATGGAGATGTGAGCATGGCGCTGACTGCC TCGGGATGGCGGAGCGATCG
Downstream 100 bases:
>100_bases ACGAGGCTGTGCAGACAGGCCTCAAATCCAGCGGCGAGCTTGGTCCTGACACCATGCGGCTCCAAACCCTGTCGCGCGTC AATGTAACCCGCGAGGAGCT
Product: TrwC protein
Products: NA
Alternate protein names: DNA helicase I [H]
Number of amino acids: Translated: 542; Mature: 542
Protein sequence:
>542_residues MLSVANVRTAGGAANYFAADNYYTRADADRSGEWLGNGAAALGLKGAVDARQFEAVLKGLLPDGSRVGSDNRAHRAGTDL TFSMPKSWSVLALVGGDKRILDAYAAAVRETLRWAEKNLAETRMEVRGRERAVQTGNLAIALFQHDTNRNQEPNAHFHAV IANVTRGADGKWRALRNDKLWQHNTLLNAMTMARFRLSVEKLGYEVGEFGKHGNFEAVGVPKDVRDAFSSRRAEILDRLA TMEGRGLAARNAANLMTRADKGRIEDRDALRQQWRDTSTRLGFDPAMVIARSNARSAQDLGNLTGVGSTMRAIVRNAQAL ATSLAERLGLREGDPLIPARLTNRSVEQVAAIHAVASAVRHLGEREAAFTRAEIYRAALGFALPTSLADIEQRVDQLLRQ GHLEKGRGADRELLTTRDAISLEQRIIAGVEDGRGTAPAIVSPDIAGSRLQALSQIKYGLTLNAGQEGAGRLLLGSNNRI VAIQGVAGAGKSTVLKPVADILREEGRSVLGLSKPPQPGCRFRQPSARQPRFMPQAETCAAP
Sequences:
>Translated_542_residues MLSVANVRTAGGAANYFAADNYYTRADADRSGEWLGNGAAALGLKGAVDARQFEAVLKGLLPDGSRVGSDNRAHRAGTDL TFSMPKSWSVLALVGGDKRILDAYAAAVRETLRWAEKNLAETRMEVRGRERAVQTGNLAIALFQHDTNRNQEPNAHFHAV IANVTRGADGKWRALRNDKLWQHNTLLNAMTMARFRLSVEKLGYEVGEFGKHGNFEAVGVPKDVRDAFSSRRAEILDRLA TMEGRGLAARNAANLMTRADKGRIEDRDALRQQWRDTSTRLGFDPAMVIARSNARSAQDLGNLTGVGSTMRAIVRNAQAL ATSLAERLGLREGDPLIPARLTNRSVEQVAAIHAVASAVRHLGEREAAFTRAEIYRAALGFALPTSLADIEQRVDQLLRQ GHLEKGRGADRELLTTRDAISLEQRIIAGVEDGRGTAPAIVSPDIAGSRLQALSQIKYGLTLNAGQEGAGRLLLGSNNRI VAIQGVAGAGKSTVLKPVADILREEGRSVLGLSKPPQPGCRFRQPSARQPRFMPQAETCAAP >Mature_542_residues MLSVANVRTAGGAANYFAADNYYTRADADRSGEWLGNGAAALGLKGAVDARQFEAVLKGLLPDGSRVGSDNRAHRAGTDL TFSMPKSWSVLALVGGDKRILDAYAAAVRETLRWAEKNLAETRMEVRGRERAVQTGNLAIALFQHDTNRNQEPNAHFHAV IANVTRGADGKWRALRNDKLWQHNTLLNAMTMARFRLSVEKLGYEVGEFGKHGNFEAVGVPKDVRDAFSSRRAEILDRLA TMEGRGLAARNAANLMTRADKGRIEDRDALRQQWRDTSTRLGFDPAMVIARSNARSAQDLGNLTGVGSTMRAIVRNAQAL ATSLAERLGLREGDPLIPARLTNRSVEQVAAIHAVASAVRHLGEREAAFTRAEIYRAALGFALPTSLADIEQRVDQLLRQ GHLEKGRGADRELLTTRDAISLEQRIIAGVEDGRGTAPAIVSPDIAGSRLQALSQIKYGLTLNAGQEGAGRLLLGSNNRI VAIQGVAGAGKSTVLKPVADILREEGRSVLGLSKPPQPGCRFRQPSARQPRFMPQAETCAAP
Specific function: TraI has been identified as DNA helicase I and it also has an additional activity of site-specific nicking at oriT. DNA helicase I is a potent DNA-dependent ATPase [H]
COG id: COG0507
COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To traI of plasmid IncFII R100 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014059 - InterPro: IPR014129 - InterPro: IPR009767 - InterPro: IPR014862 [H]
Pfam domain/function: PF07057 TraI; PF08751 TrwC [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 58621; Mature: 58621
Theoretical pI: Translated: 10.73; Mature: 10.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSVANVRTAGGAANYFAADNYYTRADADRSGEWLGNGAAALGLKGAVDARQFEAVLKGL CCCCCCCCCCCCCCCEEECCCCEECCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHH LPDGSRVGSDNRAHRAGTDLTFSMPKSWSVLALVGGDKRILDAYAAAVRETLRWAEKNLA CCCCCCCCCCCCCHHCCCCEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH ETRMEVRGRERAVQTGNLAIALFQHDTNRNQEPNAHFHAVIANVTRGADGKWRALRNDKL HHHHHHHHHHHHEECCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCC WQHNTLLNAMTMARFRLSVEKLGYEVGEFGKHGNFEAVGVPKDVRDAFSSRRAEILDRLA HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHH TMEGRGLAARNAANLMTRADKGRIEDRDALRQQWRDTSTRLGFDPAMVIARSNARSAQDL HCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHH GNLTGVGSTMRAIVRNAQALATSLAERLGLREGDPLIPARLTNRSVEQVAAIHAVASAVR HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHH HLGEREAAFTRAEIYRAALGFALPTSLADIEQRVDQLLRQGHLEKGRGADRELLTTRDAI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH SLEQRIIAGVEDGRGTAPAIVSPDIAGSRLQALSQIKYGLTLNAGQEGAGRLLLGSNNRI HHHHHHHHCCCCCCCCCCCEECCCCCHHHHHHHHHHHCCEEECCCCCCCCEEEECCCCCE VAIQGVAGAGKSTVLKPVADILREEGRSVLGLSKPPQPGCRFRQPSARQPRFMPQAETCA EEEEECCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHCC AP CC >Mature Secondary Structure MLSVANVRTAGGAANYFAADNYYTRADADRSGEWLGNGAAALGLKGAVDARQFEAVLKGL CCCCCCCCCCCCCCCEEECCCCEECCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHH LPDGSRVGSDNRAHRAGTDLTFSMPKSWSVLALVGGDKRILDAYAAAVRETLRWAEKNLA CCCCCCCCCCCCCHHCCCCEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH ETRMEVRGRERAVQTGNLAIALFQHDTNRNQEPNAHFHAVIANVTRGADGKWRALRNDKL HHHHHHHHHHHHEECCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCC WQHNTLLNAMTMARFRLSVEKLGYEVGEFGKHGNFEAVGVPKDVRDAFSSRRAEILDRLA HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHH TMEGRGLAARNAANLMTRADKGRIEDRDALRQQWRDTSTRLGFDPAMVIARSNARSAQDL HCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHH GNLTGVGSTMRAIVRNAQALATSLAERLGLREGDPLIPARLTNRSVEQVAAIHAVASAVR HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHH HLGEREAAFTRAEIYRAALGFALPTSLADIEQRVDQLLRQGHLEKGRGADRELLTTRDAI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH SLEQRIIAGVEDGRGTAPAIVSPDIAGSRLQALSQIKYGLTLNAGQEGAGRLLLGSNNRI HHHHHHHHCCCCCCCCCCCEECCCCCHHHHHHHHHHHCCEEECCCCCCCCEEEECCCCCE VAIQGVAGAGKSTVLKPVADILREEGRSVLGLSKPPQPGCRFRQPSARQPRFMPQAETCA EEEEECCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHCC AP CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2163400; 7915817; 2680768; 2164585; 8736534 [H]