| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200190
Identifier: 87200190
GI number: 87200190
Start: 2316468
End: 2317040
Strand: Reverse
Name: 87200190
Synonym: Saro_2174
Alternate gene names: NA
Gene position: 2317040-2316468 (Counterclockwise)
Preceding gene: 87200191
Following gene: 87200189
Centisome position: 65.06
GC content: 68.41
Gene sequence:
>573_bases ATGGCGGATAAGGTGATCACCCATGGGTTTGGGGTCCCGAACGACCCCCTGCCGCACCAGTTCTTGGTCCGGATCCCAGC GGGCCGCACGGACACTGTCGAGGTCTGGGAAGACTTCGGCGCAGCCGGGGTCGGGACCGCCGCGCAGCGGCTCTGCCGGG CTACGGTGCAGCGCGACACGTGGCGCCAAGTGGCGGAGGGGGTGAAGGCCCACCTAAACCGGCGCCTGAAAGAGAAGGAC CTGAAGGCATCTCGCTTCAATGCTGGGGACAACCGGGTCGAGCGGATCCTCGGGCGCGAGCTCTGTGTACTCGCCTGGGC GATCGAGGACGCGACCCCGGACGAGGCGGCGATCGCCTTCACCCGCTGGTCTTCGCACCGGCCGGAGGAGCTCTGGTGGC TTTTCCAGCAAATCGACCGGGACGGGGGGGAGTGGGACAGCCCCAAGACCGGGTGGCGGGTCGCGATCCGGCACGCCCTG ATTCGGGACGGGGAGGAGGCGCCGAAGACGCCCCGTCGCCCGCGTCCGGTGGATCCGGCCGAGAAGACACCTGACCTGTT CAGCAAGTTCTGA
Upstream 100 bases:
>100_bases GGTTTCGGGAGGCGGACTTCCCTGATGGGTATGCCCTGAAGGACTTCGCGACCCAAGTCGGGATCGACATCCCGGTTGAG GACGTGGAGCAGGAGGCCTG
Downstream 100 bases:
>100_bases GGATTGATGATGACGATGACCGCCACCGAGAAATCCGCCGTTGTGCCGTTAAGCTTGCGGGACGCTCCGTCCCTGATCGA GCGGGCCTGGCCGACGGCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 190; Mature: 189
Protein sequence:
>190_residues MADKVITHGFGVPNDPLPHQFLVRIPAGRTDTVEVWEDFGAAGVGTAAQRLCRATVQRDTWRQVAEGVKAHLNRRLKEKD LKASRFNAGDNRVERILGRELCVLAWAIEDATPDEAAIAFTRWSSHRPEELWWLFQQIDRDGGEWDSPKTGWRVAIRHAL IRDGEEAPKTPRRPRPVDPAEKTPDLFSKF
Sequences:
>Translated_190_residues MADKVITHGFGVPNDPLPHQFLVRIPAGRTDTVEVWEDFGAAGVGTAAQRLCRATVQRDTWRQVAEGVKAHLNRRLKEKD LKASRFNAGDNRVERILGRELCVLAWAIEDATPDEAAIAFTRWSSHRPEELWWLFQQIDRDGGEWDSPKTGWRVAIRHAL IRDGEEAPKTPRRPRPVDPAEKTPDLFSKF >Mature_189_residues ADKVITHGFGVPNDPLPHQFLVRIPAGRTDTVEVWEDFGAAGVGTAAQRLCRATVQRDTWRQVAEGVKAHLNRRLKEKDL KASRFNAGDNRVERILGRELCVLAWAIEDATPDEAAIAFTRWSSHRPEELWWLFQQIDRDGGEWDSPKTGWRVAIRHALI RDGEEAPKTPRRPRPVDPAEKTPDLFSKF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21611; Mature: 21479
Theoretical pI: Translated: 8.27; Mature: 8.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADKVITHGFGVPNDPLPHQFLVRIPAGRTDTVEVWEDFGAAGVGTAAQRLCRATVQRDT CCCCCCCCCCCCCCCCCCHHHEEECCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHH WRQVAEGVKAHLNRRLKEKDLKASRFNAGDNRVERILGRELCVLAWAIEDATPDEAAIAF HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEE TRWSSHRPEELWWLFQQIDRDGGEWDSPKTGWRVAIRHALIRDGEEAPKTPRRPRPVDPA CCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC EKTPDLFSKF CCCCHHHHCC >Mature Secondary Structure ADKVITHGFGVPNDPLPHQFLVRIPAGRTDTVEVWEDFGAAGVGTAAQRLCRATVQRDT CCCCCCCCCCCCCCCCCHHHEEECCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHH WRQVAEGVKAHLNRRLKEKDLKASRFNAGDNRVERILGRELCVLAWAIEDATPDEAAIAF HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEE TRWSSHRPEELWWLFQQIDRDGGEWDSPKTGWRVAIRHALIRDGEEAPKTPRRPRPVDPA CCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC EKTPDLFSKF CCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA