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The map label for this gene is copD [H]

Identifier: 87200157

GI number: 87200157

Start: 2279170

End: 2280102

Strand: Direct

Name: copD [H]

Synonym: Saro_2141

Alternate gene names: 87200157

Gene position: 2279170-2280102 (Clockwise)

Preceding gene: 87200156

Following gene: 87200158

Centisome position: 63.99

GC content: 62.06

Gene sequence:

>933_bases
ATGGACAACCTGCCTGTCATCGCCATCCGGTTCGCGCTTTACGCCGACCTAATGGTGCTGGCAGGTGTGACGGCCTTCTC
GCTTTACGCGCTGAAACCCGAGGAGCGAGGCACTGTCTTGCTGCCGCTGGCCAAACCCGCCCTCCTCCTTTCGCTGCTCG
GACTGCTGCTGTCCGGCGGCGGCATGATCGCACTTGTCGCAGCCATGACCGGGACAAGCCTCTGGGCAGTAGATGGCTCG
GCCTTCAGGGAAATCGTTACACAGAGCGCCATCGGCAGCGCCTGGGTTGTGCGCATGGTGGCAGTTGCAATTGCCCTGCT
TGCCGCCCTGGGGCTTGGCCGAACCCCACACCTAGCAAGATACTGTCTGCTTGCCTCGGCTGTGCTTGCCATCGCCACGC
TGGTTTGGACTGGCCATGCCGGTGCAACCGAAGGGTGGACTGGAACGCTCCACCGGCTGAGCGACATCGTCCACATGCTG
GCGGCGGCTGTATGGATCGGCGGAATTGCAGCGTTCGCCTGGCTGCTTTTTCAGCCATTGGCGCAGCAATCCGATGCGCA
GATCAGGATCGCGCATCGGGCGCTTGAACAATTCTCGCGGGTTGGGACGCTTGCGGTCGGGTTGATCGTTCTCACGGGCA
TCATCAACAGCCTGAGCCTAATGGGCTTGCCGCATCCGTACGCCTTGTTCGCTTCGCGCTACGGCCAACTCCTGCTTATC
AAGCTCGCCCTGTTTGCTGCAATGCTGATGCTGGCGGGTGTCAACCGCTGGCGGCTGACACCCGCCCTTGGTGCAGCCAT
CGCCAACGGCAATCCGGTCCCCGCGTTACGTAGTCTTCGGCAAAGCCTGATTCTGGAGACGTCCACAGTGCTTACGATCC
TCGCCGTGGTGGCCTGGCTGGGTACGCTGGAACCGATCATGGCGTACGGGTGA

Upstream 100 bases:

>100_bases
CGGCCTCTCGCCGCCGGCACTTACCGCGTGACCTGGAGCGCGGCCGGAGCCGACACGCATCGCATGGGCGGCAACTTCAG
CTTCACCGTACGCTGAAGAC

Downstream 100 bases:

>100_bases
ATTACCTCTTGACCCTGACATGATGTCAAGGTTGATGCGAGTTGCGACAAGAGGAGTACGAAGTATGACCGAGTCGCATC
ACGACCTTGCGAAATGCACC

Product: copper resistance D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MDNLPVIAIRFALYADLMVLAGVTAFSLYALKPEERGTVLLPLAKPALLLSLLGLLLSGGGMIALVAAMTGTSLWAVDGS
AFREIVTQSAIGSAWVVRMVAVAIALLAALGLGRTPHLARYCLLASAVLAIATLVWTGHAGATEGWTGTLHRLSDIVHML
AAAVWIGGIAAFAWLLFQPLAQQSDAQIRIAHRALEQFSRVGTLAVGLIVLTGIINSLSLMGLPHPYALFASRYGQLLLI
KLALFAAMLMLAGVNRWRLTPALGAAIANGNPVPALRSLRQSLILETSTVLTILAVVAWLGTLEPIMAYG

Sequences:

>Translated_310_residues
MDNLPVIAIRFALYADLMVLAGVTAFSLYALKPEERGTVLLPLAKPALLLSLLGLLLSGGGMIALVAAMTGTSLWAVDGS
AFREIVTQSAIGSAWVVRMVAVAIALLAALGLGRTPHLARYCLLASAVLAIATLVWTGHAGATEGWTGTLHRLSDIVHML
AAAVWIGGIAAFAWLLFQPLAQQSDAQIRIAHRALEQFSRVGTLAVGLIVLTGIINSLSLMGLPHPYALFASRYGQLLLI
KLALFAAMLMLAGVNRWRLTPALGAAIANGNPVPALRSLRQSLILETSTVLTILAVVAWLGTLEPIMAYG
>Mature_310_residues
MDNLPVIAIRFALYADLMVLAGVTAFSLYALKPEERGTVLLPLAKPALLLSLLGLLLSGGGMIALVAAMTGTSLWAVDGS
AFREIVTQSAIGSAWVVRMVAVAIALLAALGLGRTPHLARYCLLASAVLAIATLVWTGHAGATEGWTGTLHRLSDIVHML
AAAVWIGGIAAFAWLLFQPLAQQSDAQIRIAHRALEQFSRVGTLAVGLIVLTGIINSLSLMGLPHPYALFASRYGQLLLI
KLALFAAMLMLAGVNRWRLTPALGAAIANGNPVPALRSLRQSLILETSTVLTILAVVAWLGTLEPIMAYG

Specific function: Exact function not known. Involved in copper resistance. Appears to be involved in copper uptake in conjunction with CopC [H]

COG id: COG1276

COG function: function code P; Putative copper export protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CopD family [H]

Homologues:

Organism=Escherichia coli, GI1788145, Length=312, Percent_Identity=28.8461538461538, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008457 [H]

Pfam domain/function: PF05425 CopD [H]

EC number: NA

Molecular weight: Translated: 32627; Mature: 32627

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNLPVIAIRFALYADLMVLAGVTAFSLYALKPEERGTVLLPLAKPALLLSLLGLLLSGG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEECCCHHHHHHHHHHHHCCC
GMIALVAAMTGTSLWAVDGSAFREIVTQSAIGSAWVVRMVAVAIALLAALGLGRTPHLAR
CHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
YCLLASAVLAIATLVWTGHAGATEGWTGTLHRLSDIVHMLAAAVWIGGIAAFAWLLFQPL
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQQSDAQIRIAHRALEQFSRVGTLAVGLIVLTGIINSLSLMGLPHPYALFASRYGQLLLI
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
KLALFAAMLMLAGVNRWRLTPALGAAIANGNPVPALRSLRQSLILETSTVLTILAVVAWL
HHHHHHHHHHHHCCCHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
GTLEPIMAYG
HHHHHHHHCC
>Mature Secondary Structure
MDNLPVIAIRFALYADLMVLAGVTAFSLYALKPEERGTVLLPLAKPALLLSLLGLLLSGG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEECCCHHHHHHHHHHHHCCC
GMIALVAAMTGTSLWAVDGSAFREIVTQSAIGSAWVVRMVAVAIALLAALGLGRTPHLAR
CHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
YCLLASAVLAIATLVWTGHAGATEGWTGTLHRLSDIVHMLAAAVWIGGIAAFAWLLFQPL
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQQSDAQIRIAHRALEQFSRVGTLAVGLIVLTGIINSLSLMGLPHPYALFASRYGQLLLI
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
KLALFAAMLMLAGVNRWRLTPALGAAIANGNPVPALRSLRQSLILETSTVLTILAVVAWL
HHHHHHHHHHHHCCCHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
GTLEPIMAYG
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3372485; 8449873 [H]