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The map label for this gene is ydeM [H]

Identifier: 87200141

GI number: 87200141

Start: 2263557

End: 2264015

Strand: Direct

Name: ydeM [H]

Synonym: Saro_2125

Alternate gene names: 87200141

Gene position: 2263557-2264015 (Clockwise)

Preceding gene: 87200140

Following gene: 87200144

Centisome position: 63.55

GC content: 60.78

Gene sequence:

>459_bases
ATGCAGTATTTCGAGGATATCGAGCCCGGCACCGTCCACCGCTTTGGCAGCTATGCCGTAAAGCGGGACGAAGTCATTGA
ATTCGCGTCGAAGTATGATCCGCAACCATTCCATCTCGATGACGAGGCGGCTGCGCAGACCCACTTCGGGCGGCTCTCGG
CGAGCGGTTGGCATACATGCGCGATGACCATGGCCATGCTGGTGGAGAACCTGAAGGAGCGCCGGCAGGCGGGGCTCGGC
TCGCCCGGTCTCGACGAAATCCGCTGGCTCCGGCCGGTCTACCCCGGAGACACGCTGTCGGTGGAGACCGAGATTGTCGA
CAAGAAGCGCAGCTCATCACGCCCGGAAATGGGAAGTTTCCGTTCACTGGTAAAGGTTTACAACCAGGACGGCGTGGTCG
TCATGTCGATGAAGTCGATCGGCCTGATCCGCGTTCGCGAGCCCGAAACGGTTGCGTGA

Upstream 100 bases:

>100_bases
ATCCTGGCCCGCTATCGCGTCATTCCCGACCCGTCGCCACGTCGACTGAAATTTTAACCGATCGATTGACAATGCCGGGC
CCGCGCGCAACGCTATCCTC

Downstream 100 bases:

>100_bases
CCCGAACGGCACCTAAAAGCACCTAAAAGCACCTAACGACACCTGCCCGCACGTGGCCGGCCTGGTCCGGTGCGCTAGAT
CGCCTTGCACTGCACGTCGC

Product: MaoC-like dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 152

Protein sequence:

>152_residues
MQYFEDIEPGTVHRFGSYAVKRDEVIEFASKYDPQPFHLDDEAAAQTHFGRLSASGWHTCAMTMAMLVENLKERRQAGLG
SPGLDEIRWLRPVYPGDTLSVETEIVDKKRSSSRPEMGSFRSLVKVYNQDGVVVMSMKSIGLIRVREPETVA

Sequences:

>Translated_152_residues
MQYFEDIEPGTVHRFGSYAVKRDEVIEFASKYDPQPFHLDDEAAAQTHFGRLSASGWHTCAMTMAMLVENLKERRQAGLG
SPGLDEIRWLRPVYPGDTLSVETEIVDKKRSSSRPEMGSFRSLVKVYNQDGVVVMSMKSIGLIRVREPETVA
>Mature_152_residues
MQYFEDIEPGTVHRFGSYAVKRDEVIEFASKYDPQPFHLDDEAAAQTHFGRLSASGWHTCAMTMAMLVENLKERRQAGLG
SPGLDEIRWLRPVYPGDTLSVETEIVDKKRSSSRPEMGSFRSLVKVYNQDGVVVMSMKSIGLIRVREPETVA

Specific function: Phenylacetic acid aerobic catabolism. [C]

COG id: COG2030

COG function: function code I; Acyl dehydratase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002539 [H]

Pfam domain/function: PF01575 MaoC_dehydratas [H]

EC number: NA

Molecular weight: Translated: 17168; Mature: 17168

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYFEDIEPGTVHRFGSYAVKRDEVIEFASKYDPQPFHLDDEAAAQTHFGRLSASGWHTC
CCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCHHHH
AMTMAMLVENLKERRQAGLGSPGLDEIRWLRPVYPGDTLSVETEIVDKKRSSSRPEMGSF
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEEHHHHHHHHHCCCCCCHHHH
RSLVKVYNQDGVVVMSMKSIGLIRVREPETVA
HHHHHHHCCCCEEEEEECCCCEEEECCCCCCC
>Mature Secondary Structure
MQYFEDIEPGTVHRFGSYAVKRDEVIEFASKYDPQPFHLDDEAAAQTHFGRLSASGWHTC
CCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCHHHH
AMTMAMLVENLKERRQAGLGSPGLDEIRWLRPVYPGDTLSVETEIVDKKRSSSRPEMGSF
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEEHHHHHHHHHCCCCCCHHHH
RSLVKVYNQDGVVVMSMKSIGLIRVREPETVA
HHHHHHHCCCCEEEEEECCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]