BacMap

Definition	Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome.
Accession	NC_007794
Length	3,561,584

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The map label for this gene is dnaJ [H]

Identifier: 87200069

GI number: 87200069

Start: 2194213

End: 2195349

Strand: Reverse

Name: dnaJ [H]

Synonym: Saro_2053

Alternate gene names: 87200069

Gene position: 2195349-2194213 (Counterclockwise)

Preceding gene: 87200070

Following gene: 87200066

Centisome position: 61.64

GC content: 66.31

Gene sequence:

>1137_bases
ATGTCGGCCGAGATCGATTTCTACGAACTGCTCGAAGTGGAGCGCACCGCGGACGACAAGGTGCTGAAGTCCGCTTATCG
CAAGCTGGCGATGAAGTACCACCCGGACAAGAATCCCGGGTGCGCGGATTCCGAAGCCAGGTTCAAGCAGATCAACGAGG
CCTATGCCTGCCTCTCCGACCCGCAGAAGCGGGCGGCCTACGATCGCTATGGCCACGCCGCGTTCCAGCAGGGCGCCGGT
GGAGGAGCCGGGGGCGGTGGCTTCGGCGGGGGCGACTTCGGCGACATCGGCGACATTTTCGAGACGATCTTCGGTGGCGC
CTTCGGCGGCGGCGGCCGGCAGCAGCCGCGCCGTGGGGCCGACCTGCGCTACGACATGGAAATCAGCCTGGAAGACGCCT
TCCACGGCAAGGATGCCGAAATCGAGGTCGAGGTTTCGCAGAAGTGCGATCCCTGTGGTGGATCGGGCGCGACGCCCGGC
ACGTCCGCGCGGCGCTGCAACCTTTGTGGCGGCCACGGCAAGGTCCGTGCCCAGCAGGGCTTCTTCATGGTCGAGCGGCC
GTGTCCCAATTGCCACGGGCGCGGCGAAGTGATCGAAAAGCCTTGCAAGCATTGCCGTGGCGAGGGCCGGGTCGATGCCG
AGCAGCGATTGCAGGTCACGATCCCGGCCGGGGTGGACAATGGCACCCGCATCCGCCTTGCCGGAAAGGGCGAGGCGGGG
CCGTTCGGTGCGCCTCCGGGCGACCTCTACATCTTCCTCCACATCCAGCGGCACCGGGTGTTCGAGCGCGAAGGCACGAC
GCTGCTGACCCGTTGCCCGATCAGCTTCACCACTGCGGCGCTTGGCGGCGAGATCGAGATTCCGGGCCTCGACGGCAAGG
TCCACGCCATCGAGATTCCCGCCGGCATCCAGTCCGGCAAGCAGTTGCGCAAGCGTGGCGCGGGCATGCCCGTGCTTCAG
GGACGCGGAATTGGCGATCTCGTGGTGGAGATCCACGTCGAGACGCCGACCAAGCTGTCCGCGCGCCAGAAGGAACTGCT
GCGCGAGTTCCAGGCGACCGAGACCGGCGAGGAATGCCCCCAGTCGAAGGGCTTCTTCGAACGGATCAAGGACGCCTGGA
CCGACCTTACCGAGTAA

Upstream 100 bases:

>100_bases
GACGAGAACAAGTGATGTTGCGATGAAACCGGCCCGCCGCTTGCGTGAACGCGTGAGCGGCGGGCCATTCTTTCTTGAAC
GCCCGCGTTAGGGAACCGCA

Downstream 100 bases:

>100_bases
GGCGTGCGCGTGCCGCTCCGGTCATGCGGGGCGGCGGCGCGGCAGGAACAGCACGAAGCGCGCCAGATCCAGCCTGAAGA
ACAGCAGCCATAGCGCATGC

Product: chaperone protein DnaJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 377

Protein sequence:

>378_residues
MSAEIDFYELLEVERTADDKVLKSAYRKLAMKYHPDKNPGCADSEARFKQINEAYACLSDPQKRAAYDRYGHAAFQQGAG
GGAGGGGFGGGDFGDIGDIFETIFGGAFGGGGRQQPRRGADLRYDMEISLEDAFHGKDAEIEVEVSQKCDPCGGSGATPG
TSARRCNLCGGHGKVRAQQGFFMVERPCPNCHGRGEVIEKPCKHCRGEGRVDAEQRLQVTIPAGVDNGTRIRLAGKGEAG
PFGAPPGDLYIFLHIQRHRVFEREGTTLLTRCPISFTTAALGGEIEIPGLDGKVHAIEIPAGIQSGKQLRKRGAGMPVLQ
GRGIGDLVVEIHVETPTKLSARQKELLREFQATETGEECPQSKGFFERIKDAWTDLTE

Sequences:

>Translated_378_residues
MSAEIDFYELLEVERTADDKVLKSAYRKLAMKYHPDKNPGCADSEARFKQINEAYACLSDPQKRAAYDRYGHAAFQQGAG
GGAGGGGFGGGDFGDIGDIFETIFGGAFGGGGRQQPRRGADLRYDMEISLEDAFHGKDAEIEVEVSQKCDPCGGSGATPG
TSARRCNLCGGHGKVRAQQGFFMVERPCPNCHGRGEVIEKPCKHCRGEGRVDAEQRLQVTIPAGVDNGTRIRLAGKGEAG
PFGAPPGDLYIFLHIQRHRVFEREGTTLLTRCPISFTTAALGGEIEIPGLDGKVHAIEIPAGIQSGKQLRKRGAGMPVLQ
GRGIGDLVVEIHVETPTKLSARQKELLREFQATETGEECPQSKGFFERIKDAWTDLTE
>Mature_377_residues
SAEIDFYELLEVERTADDKVLKSAYRKLAMKYHPDKNPGCADSEARFKQINEAYACLSDPQKRAAYDRYGHAAFQQGAGG
GAGGGGFGGGDFGDIGDIFETIFGGAFGGGGRQQPRRGADLRYDMEISLEDAFHGKDAEIEVEVSQKCDPCGGSGATPGT
SARRCNLCGGHGKVRAQQGFFMVERPCPNCHGRGEVIEKPCKHCRGEGRVDAEQRLQVTIPAGVDNGTRIRLAGKGEAGP
FGAPPGDLYIFLHIQRHRVFEREGTTLLTRCPISFTTAALGGEIEIPGLDGKVHAIEIPAGIQSGKQLRKRGAGMPVLQG
RGIGDLVVEIHVETPTKLSARQKELLREFQATETGEECPQSKGFFERIKDAWTDLTE

Specific function: Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion. Unfolded proteins bind initially to dnaJ; upon

COG id: COG0484

COG function: function code O; DnaJ-class molecular chaperone with C-terminal Zn finger domain

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 J domain [H]

Homologues:

Organism=Homo sapiens, GI205360838, Length=358, Percent_Identity=34.6368715083799, Blast_Score=211, Evalue=9e-55,
Organism=Homo sapiens, GI205360840, Length=358, Percent_Identity=34.6368715083799, Blast_Score=211, Evalue=1e-54,
Organism=Homo sapiens, GI194328760, Length=393, Percent_Identity=32.5699745547074, Blast_Score=165, Evalue=6e-41,
Organism=Homo sapiens, GI194328758, Length=393, Percent_Identity=32.5699745547074, Blast_Score=165, Evalue=8e-41,
Organism=Homo sapiens, GI4504511, Length=374, Percent_Identity=34.4919786096257, Blast_Score=160, Evalue=2e-39,
Organism=Homo sapiens, GI5031741, Length=350, Percent_Identity=33.7142857142857, Blast_Score=158, Evalue=8e-39,
Organism=Homo sapiens, GI7706495, Length=336, Percent_Identity=34.2261904761905, Blast_Score=138, Evalue=9e-33,
Organism=Homo sapiens, GI194328762, Length=356, Percent_Identity=30.3370786516854, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI201862518, Length=397, Percent_Identity=26.9521410579345, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI201862587, Length=397, Percent_Identity=26.9521410579345, Blast_Score=117, Evalue=3e-26,
Organism=Homo sapiens, GI56549115, Length=397, Percent_Identity=26.9521410579345, Blast_Score=116, Evalue=3e-26,
Organism=Homo sapiens, GI6631085, Length=369, Percent_Identity=27.10027100271, Blast_Score=115, Evalue=8e-26,
Organism=Homo sapiens, GI5453690, Length=392, Percent_Identity=25.2551020408163, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI39204547, Length=366, Percent_Identity=25.6830601092896, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI47777312, Length=108, Percent_Identity=48.1481481481481, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI194306642, Length=105, Percent_Identity=49.5238095238095, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI194306640, Length=105, Percent_Identity=49.5238095238095, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI9558755, Length=123, Percent_Identity=39.0243902439024, Blast_Score=86, Evalue=6e-17,
Organism=Homo sapiens, GI23503241, Length=106, Percent_Identity=43.3962264150943, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI72534740, Length=111, Percent_Identity=45.045045045045, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI4885495, Length=67, Percent_Identity=53.7313432835821, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI17388799, Length=67, Percent_Identity=53.7313432835821, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI24308127, Length=98, Percent_Identity=39.7959183673469, Blast_Score=79, Evalue=8e-15,
Organism=Homo sapiens, GI27151736, Length=107, Percent_Identity=41.1214953271028, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI88501736, Length=107, Percent_Identity=41.1214953271028, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI22749377, Length=112, Percent_Identity=43.75, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI21553335, Length=106, Percent_Identity=40.5660377358491, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI45504382, Length=65, Percent_Identity=47.6923076923077, Blast_Score=73, Evalue=5e-13,
Organism=Homo sapiens, GI68077168, Length=106, Percent_Identity=41.5094339622642, Blast_Score=73, Evalue=5e-13,
Organism=Homo sapiens, GI68077166, Length=106, Percent_Identity=41.5094339622642, Blast_Score=73, Evalue=5e-13,
Organism=Homo sapiens, GI29126218, Length=65, Percent_Identity=47.6923076923077, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI217035105, Length=69, Percent_Identity=50.7246376811594, Blast_Score=70, Evalue=2e-12,
Organism=Escherichia coli, GI1786197, Length=380, Percent_Identity=51.5789473684211, Blast_Score=371, Evalue=1e-104,
Organism=Escherichia coli, GI1787235, Length=351, Percent_Identity=32.7635327635328, Blast_Score=145, Evalue=4e-36,
Organism=Caenorhabditis elegans, GI17553098, Length=358, Percent_Identity=33.5195530726257, Blast_Score=172, Evalue=3e-43,
Organism=Caenorhabditis elegans, GI17553096, Length=358, Percent_Identity=33.5195530726257, Blast_Score=172, Evalue=3e-43,
Organism=Caenorhabditis elegans, GI17507263, Length=349, Percent_Identity=32.6647564469914, Blast_Score=134, Evalue=8e-32,
Organism=Caenorhabditis elegans, GI212645553, Length=353, Percent_Identity=35.1274787535411, Blast_Score=130, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI17554644, Length=103, Percent_Identity=43.6893203883495, Blast_Score=90, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI115532378, Length=100, Percent_Identity=39, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17534355, Length=111, Percent_Identity=46.8468468468468, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17538236, Length=123, Percent_Identity=41.4634146341463, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17554874, Length=70, Percent_Identity=48.5714285714286, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17563890, Length=226, Percent_Identity=27.8761061946903, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17568643, Length=73, Percent_Identity=43.8356164383562, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6324265, Length=359, Percent_Identity=32.8690807799443, Blast_Score=170, Evalue=3e-43,
Organism=Saccharomyces cerevisiae, GI6323870, Length=360, Percent_Identity=34.1666666666667, Blast_Score=139, Evalue=8e-34,
Organism=Saccharomyces cerevisiae, GI6323119, Length=375, Percent_Identity=27.4666666666667, Blast_Score=117, Evalue=2e-27,
Organism=Saccharomyces cerevisiae, GI6321094, Length=380, Percent_Identity=28.4210526315789, Blast_Score=104, Evalue=3e-23,
Organism=Saccharomyces cerevisiae, GI6324252, Length=432, Percent_Identity=23.6111111111111, Blast_Score=100, Evalue=7e-22,
Organism=Saccharomyces cerevisiae, GI6323813, Length=129, Percent_Identity=41.8604651162791, Blast_Score=78, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6322194, Length=112, Percent_Identity=39.2857142857143, Blast_Score=72, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6320888, Length=108, Percent_Identity=37.962962962963, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6324103, Length=65, Percent_Identity=53.8461538461538, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI45552813, Length=374, Percent_Identity=28.6096256684492, Blast_Score=155, Evalue=6e-38,
Organism=Drosophila melanogaster, GI45549272, Length=374, Percent_Identity=28.6096256684492, Blast_Score=154, Evalue=9e-38,
Organism=Drosophila melanogaster, GI45552811, Length=376, Percent_Identity=28.7234042553192, Blast_Score=154, Evalue=1e-37,
Organism=Drosophila melanogaster, GI20129487, Length=352, Percent_Identity=31.25, Blast_Score=144, Evalue=1e-34,
Organism=Drosophila melanogaster, GI24584014, Length=352, Percent_Identity=31.25, Blast_Score=144, Evalue=1e-34,
Organism=Drosophila melanogaster, GI24646562, Length=356, Percent_Identity=32.5842696629214, Blast_Score=143, Evalue=2e-34,
Organism=Drosophila melanogaster, GI24646560, Length=356, Percent_Identity=32.5842696629214, Blast_Score=143, Evalue=2e-34,
Organism=Drosophila melanogaster, GI24646558, Length=356, Percent_Identity=32.5842696629214, Blast_Score=143, Evalue=2e-34,
Organism=Drosophila melanogaster, GI24646556, Length=356, Percent_Identity=32.5842696629214, Blast_Score=143, Evalue=2e-34,
Organism=Drosophila melanogaster, GI21357547, Length=356, Percent_Identity=32.5842696629214, Blast_Score=143, Evalue=2e-34,
Organism=Drosophila melanogaster, GI19920464, Length=349, Percent_Identity=30.945558739255, Blast_Score=133, Evalue=2e-31,
Organism=Drosophila melanogaster, GI85726398, Length=362, Percent_Identity=28.4530386740331, Blast_Score=129, Evalue=4e-30,
Organism=Drosophila melanogaster, GI28574949, Length=368, Percent_Identity=25.2717391304348, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI18858081, Length=350, Percent_Identity=29.7142857142857, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24654066, Length=68, Percent_Identity=52.9411764705882, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24654070, Length=68, Percent_Identity=52.9411764705882, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24654068, Length=68, Percent_Identity=52.9411764705882, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24654072, Length=68, Percent_Identity=52.9411764705882, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24658562, Length=171, Percent_Identity=35.0877192982456, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24658555, Length=171, Percent_Identity=35.0877192982456, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI161077138, Length=65, Percent_Identity=52.3076923076923, Blast_Score=79, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24762799, Length=65, Percent_Identity=52.3076923076923, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI17737735, Length=65, Percent_Identity=50.7692307692308, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24668523, Length=65, Percent_Identity=50.7692307692308, Blast_Score=76, Evalue=5e-14,
Organism=Drosophila melanogaster, GI28574723, Length=65, Percent_Identity=50.7692307692308, Blast_Score=76, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24651436, Length=65, Percent_Identity=44.6153846153846, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI21358311, Length=65, Percent_Identity=44.6153846153846, Blast_Score=69, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24651439, Length=79, Percent_Identity=39.2405063291139, Blast_Score=68, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012724
- InterPro:   IPR002939
- InterPro:   IPR001623
- InterPro:   IPR018253
- InterPro:   IPR008971
- InterPro:   IPR015609
- InterPro:   IPR003095
- InterPro:   IPR001305 [H]

Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C; PF00684 DnaJ_CXXCXGXG [H]

EC number: NA

Molecular weight: Translated: 40843; Mature: 40712

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS00636 DNAJ_1 ; PS50076 DNAJ_2 ; PS00637 DNAJ_CXXCXGXG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAEIDFYELLEVERTADDKVLKSAYRKLAMKYHPDKNPGCADSEARFKQINEAYACLSD
CCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCC
PQKRAAYDRYGHAAFQQGAGGGAGGGGFGGGDFGDIGDIFETIFGGAFGGGGRQQPRRGA
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
DLRYDMEISLEDAFHGKDAEIEVEVSQKCDPCGGSGATPGTSARRCNLCGGHGKVRAQQG
CEEEEEEEEEHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCEEECCC
FFMVERPCPNCHGRGEVIEKPCKHCRGEGRVDAEQRLQVTIPAGVDNGTRIRLAGKGEAG
EEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCC
PFGAPPGDLYIFLHIQRHRVFEREGTTLLTRCPISFTTAALGGEIEIPGLDGKVHAIEIP
CCCCCCCCEEEEEEEEHHHHHHCCCCEEEEECCCHHHHHHCCCEEEECCCCCEEEEEECC
AGIQSGKQLRKRGAGMPVLQGRGIGDLVVEIHVETPTKLSARQKELLREFQATETGEECP
CCCHHHHHHHHHCCCCCEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHCC
QSKGFFERIKDAWTDLTE
CCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
SAEIDFYELLEVERTADDKVLKSAYRKLAMKYHPDKNPGCADSEARFKQINEAYACLSD
CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCC
PQKRAAYDRYGHAAFQQGAGGGAGGGGFGGGDFGDIGDIFETIFGGAFGGGGRQQPRRGA
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
DLRYDMEISLEDAFHGKDAEIEVEVSQKCDPCGGSGATPGTSARRCNLCGGHGKVRAQQG
CEEEEEEEEEHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCEEECCC
FFMVERPCPNCHGRGEVIEKPCKHCRGEGRVDAEQRLQVTIPAGVDNGTRIRLAGKGEAG
EEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCC
PFGAPPGDLYIFLHIQRHRVFEREGTTLLTRCPISFTTAALGGEIEIPGLDGKVHAIEIP
CCCCCCCCEEEEEEEEHHHHHHCCCCEEEEECCCHHHHHHCCCEEEECCCCCEEEEEECC
AGIQSGKQLRKRGAGMPVLQGRGIGDLVVEIHVETPTKLSARQKELLREFQATETGEECP
CCCHHHHHHHHHCCCCCEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHCC
QSKGFFERIKDAWTDLTE
CCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA