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The map label for this gene is 87200055

Identifier: 87200055

GI number: 87200055

Start: 2175675

End: 2177105

Strand: Reverse

Name: 87200055

Synonym: Saro_2039

Alternate gene names: NA

Gene position: 2177105-2175675 (Counterclockwise)

Preceding gene: 87200056

Following gene: 87200053

Centisome position: 61.13

GC content: 64.64

Gene sequence:

>1431_bases
ATGATGCCGGACAGGCGCCGGTTTGAGGCCTTCCGCGTACAATTCGCCGCGTCGGACGATTTCGAAGGCTGGCGTGACGC
CGCCCGCCGCATGATTCGCGCGAAGATTGCCCCAGACCAGGTGATGTGGGAATCTCCCGCCGACCAGTCTGCCGATATCT
TCGCCCGAGGCGGTGTCGCCCTGCCATCGCCGCCGACGGACGCTCCCCAACCGCGCGCGTCGAAGGACTTCCTTCAACTT
GCGCAAAGCGTCATCCTTCATTCTGGCAGTAAACGGTTTTCTACTCTTTATCGTACGCTTTGGCGGCTCCAGTCTCGGCC
CCGGCTGATGGACGACAAGGCCGATGCCGACGTGCGGGCGATGGAGGACCTTGCCCGGCAGGTGCGGCGCGACATCCACA
AGATGCGCGCCTTCGTCCGCTTCCGCAGCGTCGAGGGCGAGGCGGGAGAGCGATATGTTGCCTGGTTCGAGCCCGAGCAT
CACATCCTGCGCGCGAATGCGGGCTTCTTCGTCCGTCGCTTCACCACCATGCAGTGGTCGATCCTAACCCCGCGCGGTAG
CCTGCACTGGGATGGCGAGACGCTGCACGAGGGGCCGCCGGCCACCCGCGCCGATGCGCCTTCCGGCGATCCGGTCGAAG
GGCTGTGGCGTACCTACTATGCATCGATCTTCAATCCCGCGCGTTTGAAGGTCGGGGCCATGCTCAAGGAAATGCCCCGC
AAATACTGGAAGAACATGCCGGAGGCGGCGCTCATTCCCGAATTGATCGCAGGGGCACAATCACGCGAGGCACGAATGGT
ACAGGCTGGCGAGCAGGATCTCGGTGAGACGCCAGTGAGCATCGATGCCATCGGCGCGGCCATCCTGGCCTGCCGTCGGT
GCGACATCGGCTGCAATGGCACCCGGGCGGTCATGGGCGAGGGACCGCACGACGCGGCCCTGATGATCATCGGCGAGCAG
CCCGGCGAACAGGAAGAGGCGCAGGGCCGGCCTTTTGTCGGTCCTGCCGGTCAACTGCTGCGCACCCATCTCGAACATGC
CGGCATTCCGGCGGAGCGCGCTTACGTCACCAATGCGGTCAAGCACTTCAAGTTCATGCCGCAGGGAAAGCGTCGCCTGC
ACCAGAACCCGTCAGCCAGGGAAATCGACGTGTGCCGCTGGTGGCTCGAGGGTGAACGCGGGCTGGTTCGCCCGCGCCTG
ATCCTCGCGCTGGGGGCAAGTGCGGCGCGCAGCCTGCTGGGCAGGACTGTCAGCGTCCAGAAGGTGCGGGGTGCACCGCA
TGTGCTGGACGATGGCAGCGAACTGTGGATCACCACCCACCCCAGCTACCTCCTGCGCCTGGACGACGGCGGGCGTTCGG
AAGAAGAAGCCAGATTTTCAAATGACTTGCAGAAGGTAGCTGCGCGGCTTTCGCAGATTTCGTCCGGCTAG

Upstream 100 bases:

>100_bases
TCGTGGCCGAGGACTGGCGCCCGGTCCTGCTCACAGACCGGGCCGACCTGCGCAGCCTCGTGGCGCCTGCCGCGCCCGGA
CAACAGCTTGAACTCTTCGC

Downstream 100 bases:

>100_bases
GTCCGAAGGCGCTCGATCCCCTGCGCCAGGGCGACATAGAGCTTGCCCATATCCGACGACAGCAGCGTGACGCCAAGCGC
GTTGCCATCCCGCGTCGAGA

Product: uracil-DNA glycosylase superfamily protein

Products: diphosphate; DNAn+1

Alternate protein names: Uracil-DNA Glycosylase; DNA Polymerase Related Protein; Uracil-DNA Glycosylase Superfamily Protein; Uracil DNA Glycosylase Superfamily Protein; Uracil-DNA Glycosylase Superfamily; Phage SPO1 DNA Polymerase-Like Protein; DNA Polymerase Bacteriophage-Type; DNA-Directed DNA Polymerase Protein; Uracil-DNA Glycosylase Family 4 Protein; Phage DNA Polymerase; DNA Polymerase; Helicase/Glycosylase; Phage SPO1 DNA Polymerase Domain-Containing Protein; DNA Glycosylase; Uracil DNA Glycosylase Protein; Uracil DNA Glycosylase; DNA-Directed DNA Polymerase Bacteriophage-Type; Uracil DNA Glycosylase Superfamily; Uracil-DNA Glycosylase Phage-Related Protein; Phage Spo1 DNA Polymerase-Related Protein; Phage SPO1 DNA Polymerase; DNA Polymerase-Related Protein; Uracil DNA Glycosylase Family Protein; Transcriptional Regulator Fis Family; N-Terminus Of Phage SPO1 DNA Polymerase; Fis Family Transcriptional Regulator; DNA Polymerase-Like Protein; Leucyl-TRNA Synthetase

Number of amino acids: Translated: 476; Mature: 476

Protein sequence:

>476_residues
MMPDRRRFEAFRVQFAASDDFEGWRDAARRMIRAKIAPDQVMWESPADQSADIFARGGVALPSPPTDAPQPRASKDFLQL
AQSVILHSGSKRFSTLYRTLWRLQSRPRLMDDKADADVRAMEDLARQVRRDIHKMRAFVRFRSVEGEAGERYVAWFEPEH
HILRANAGFFVRRFTTMQWSILTPRGSLHWDGETLHEGPPATRADAPSGDPVEGLWRTYYASIFNPARLKVGAMLKEMPR
KYWKNMPEAALIPELIAGAQSREARMVQAGEQDLGETPVSIDAIGAAILACRRCDIGCNGTRAVMGEGPHDAALMIIGEQ
PGEQEEAQGRPFVGPAGQLLRTHLEHAGIPAERAYVTNAVKHFKFMPQGKRRLHQNPSAREIDVCRWWLEGERGLVRPRL
ILALGASAARSLLGRTVSVQKVRGAPHVLDDGSELWITTHPSYLLRLDDGGRSEEEARFSNDLQKVAARLSQISSG

Sequences:

>Translated_476_residues
MMPDRRRFEAFRVQFAASDDFEGWRDAARRMIRAKIAPDQVMWESPADQSADIFARGGVALPSPPTDAPQPRASKDFLQL
AQSVILHSGSKRFSTLYRTLWRLQSRPRLMDDKADADVRAMEDLARQVRRDIHKMRAFVRFRSVEGEAGERYVAWFEPEH
HILRANAGFFVRRFTTMQWSILTPRGSLHWDGETLHEGPPATRADAPSGDPVEGLWRTYYASIFNPARLKVGAMLKEMPR
KYWKNMPEAALIPELIAGAQSREARMVQAGEQDLGETPVSIDAIGAAILACRRCDIGCNGTRAVMGEGPHDAALMIIGEQ
PGEQEEAQGRPFVGPAGQLLRTHLEHAGIPAERAYVTNAVKHFKFMPQGKRRLHQNPSAREIDVCRWWLEGERGLVRPRL
ILALGASAARSLLGRTVSVQKVRGAPHVLDDGSELWITTHPSYLLRLDDGGRSEEEARFSNDLQKVAARLSQISSG
>Mature_476_residues
MMPDRRRFEAFRVQFAASDDFEGWRDAARRMIRAKIAPDQVMWESPADQSADIFARGGVALPSPPTDAPQPRASKDFLQL
AQSVILHSGSKRFSTLYRTLWRLQSRPRLMDDKADADVRAMEDLARQVRRDIHKMRAFVRFRSVEGEAGERYVAWFEPEH
HILRANAGFFVRRFTTMQWSILTPRGSLHWDGETLHEGPPATRADAPSGDPVEGLWRTYYASIFNPARLKVGAMLKEMPR
KYWKNMPEAALIPELIAGAQSREARMVQAGEQDLGETPVSIDAIGAAILACRRCDIGCNGTRAVMGEGPHDAALMIIGEQ
PGEQEEAQGRPFVGPAGQLLRTHLEHAGIPAERAYVTNAVKHFKFMPQGKRRLHQNPSAREIDVCRWWLEGERGLVRPRL
ILALGASAARSLLGRTVSVQKVRGAPHVLDDGSELWITTHPSYLLRLDDGGRSEEEARFSNDLQKVAARLSQISSG

Specific function: Unknown

COG id: COG1573

COG function: function code L; Uracil-DNA glycosylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.7.7.7

Molecular weight: Translated: 53337; Mature: 53337

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMPDRRRFEAFRVQFAASDDFEGWRDAARRMIRAKIAPDQVMWESPADQSADIFARGGVA
CCCCHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHCCCCHHEECCCCCCCCCEEECCCCC
LPSPPTDAPQPRASKDFLQLAQSVILHSGSKRFSTLYRTLWRLQSRPRLMDDKADADVRA
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
MEDLARQVRRDIHKMRAFVRFRSVEGEAGERYVAWFEPEHHILRANAGFFVRRFTTMQWS
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEECCCEEEEEEEEEEEE
ILTPRGSLHWDGETLHEGPPATRADAPSGDPVEGLWRTYYASIFNPARLKVGAMLKEMPR
EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
KYWKNMPEAALIPELIAGAQSREARMVQAGEQDLGETPVSIDAIGAAILACRRCDIGCNG
HHHHCCCCHHHHHHHHCCCCCHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHCCCCCCC
TRAVMGEGPHDAALMIIGEQPGEQEEAQGRPFVGPAGQLLRTHLEHAGIPAERAYVTNAV
CEEECCCCCCCEEEEEEECCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
KHFKFMPQGKRRLHQNPSAREIDVCRWWLEGERGLVRPRLILALGASAARSLLGRTVSVQ
HHHHCCCCHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHCHHHHHHHHCCCHHHH
KVRGAPHVLDDGSELWITTHPSYLLRLDDGGRSEEEARFSNDLQKVAARLSQISSG
HHCCCCCEECCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MMPDRRRFEAFRVQFAASDDFEGWRDAARRMIRAKIAPDQVMWESPADQSADIFARGGVA
CCCCHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHCCCCHHEECCCCCCCCCEEECCCCC
LPSPPTDAPQPRASKDFLQLAQSVILHSGSKRFSTLYRTLWRLQSRPRLMDDKADADVRA
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
MEDLARQVRRDIHKMRAFVRFRSVEGEAGERYVAWFEPEHHILRANAGFFVRRFTTMQWS
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEECCCEEEEEEEEEEEE
ILTPRGSLHWDGETLHEGPPATRADAPSGDPVEGLWRTYYASIFNPARLKVGAMLKEMPR
EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
KYWKNMPEAALIPELIAGAQSREARMVQAGEQDLGETPVSIDAIGAAILACRRCDIGCNG
HHHHCCCCHHHHHHHHCCCCCHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHCCCCCCC
TRAVMGEGPHDAALMIIGEQPGEQEEAQGRPFVGPAGQLLRTHLEHAGIPAERAYVTNAV
CEEECCCCCCCEEEEEEECCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
KHFKFMPQGKRRLHQNPSAREIDVCRWWLEGERGLVRPRLILALGASAARSLLGRTVSVQ
HHHHCCCCHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHCHHHHHHHHCCCHHHH
KVRGAPHVLDDGSELWITTHPSYLLRLDDGGRSEEEARFSNDLQKVAARLSQISSG
HHCCCCCEECCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA