| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200052
Identifier: 87200052
GI number: 87200052
Start: 2171393
End: 2172637
Strand: Reverse
Name: 87200052
Synonym: Saro_2036
Alternate gene names: NA
Gene position: 2172637-2171393 (Counterclockwise)
Preceding gene: 87200053
Following gene: 87200051
Centisome position: 61.0
GC content: 68.84
Gene sequence:
>1245_bases TTGCGGGTCGCAGTACTATCGTTGATGGAGGCCGCCGGGGACGTGCCCGGCTCGCTGCGTGGATACCTGTCCATTGGCGG GCGTTCCCTGTTGCGCCACCAGCTCGGCTTCGCCCTGTCGCTCGGTTGCAAGCGGATCATCGTGATGTCCGAGGGCATCA GCGGCGAACTGGTCGCCCTCCAGCACGTTGCCGAGGCTGGCGGAGCGCAGTTCCATGTGGTCGCCACGGCGCGCGCGCTC GTCCCGCTGCTGCCTCCGGATGACGATGTCTTCGTTCTCGGGGATGGGCTGCTCGCCATGCCCGATGCGGTGCGAGAACT GCTCGAGGCGGGGCCGGCCGTCCTGACCCTTCCTGTAGAGACCGCGCTGCCACTCGGCTTCGAGCGTATCGACATCAACA ATGCGTTTGCCGCCGCCATGCGGTTCCCGGGGCGGATCGCGGCGGGGCTTGCCGACCTGCCGCCTGAATGGAATGCCCAG TCTGCCCTGCTGCGGCTCGTCGTCCAGGCGCGTGTCCCCTTGCGCGGGGTTCCGGCGGGCATGCTCGACGATGGCCGCTG GAACATCGTCCGCAATGAAGAAGAAGCGCTGCGGGCAGAGCGGTCATGGCTGCGTCTTCACACCGGCATAGCCGTTGCGG GCGCCGCCTCGCCGGGGGAAATGCTTGCCGTTGCGGCGGTCCGGCGTTTCGGTCCCGCGTTGCTCCACGCCGGCACGCGC CCGGCGCTGGTGGGCCTTGCGGCGGGCGTGCTCGGCCTCCTGGGGGGCGGGCTGGCATGGCTGGGCAATTTCGCCGCCGG TTTCGCGCTGCTCGGCCTTGCCTGGCTGGCAGAGCGCATCGCCAGCCTGCTGGGGCAGGTCGAGAGGGACTCGCTGCTGG CCTCGGGCATCGAGCGCCGCGGGGTCGCTCTGTTCCACCTTCTGGTCGATGCGGGGATTGTGGCTCTGGCCGGATGGCGC AGCGACCTTGCCAATGTCCCGAAGGTGCCGTGGGGCGGCGCGATGTTCGCTCCGCTGCTGCTGGTTCTGGCCCTGCGCCT CGTCCCTCTTGCGCTGCCACGGCGCAAGTGGGCCCATCAGCTCGAGGACAGGTTCGTCCTCGGCCTGGCCTTGGCTGCGG TGAGCATCGTCTTGCCGTTCGATCTGGCGGTGGCTGCTGGCGTCATTCTCGTGGTGGGCGCATGCCTGCTTGCGCTTCAG GCGGAAAGCCGCGACCCTAACCCGCAGTTAACCAGTCGGCAGTAA
Upstream 100 bases:
>100_bases GATGCTTGCGGACCTTTCCCTTTAACCCCCGCCAAGTTGCGCGGCCTCCTTGGCAGCGCGTCGGCCAATCCCTACCATGA CCCCGTCAGGAGGCATGACC
Downstream 100 bases:
>100_bases GAGCTTCGCATGGCATTGACCGCACCCACCGGCGCCGACCACGAAGCGATCGAGGCACTGCTGCGCGAGGAGCTGTTCCG GGCGGACGAGGCGATAGTCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 414; Mature: 414
Protein sequence:
>414_residues MRVAVLSLMEAAGDVPGSLRGYLSIGGRSLLRHQLGFALSLGCKRIIVMSEGISGELVALQHVAEAGGAQFHVVATARAL VPLLPPDDDVFVLGDGLLAMPDAVRELLEAGPAVLTLPVETALPLGFERIDINNAFAAAMRFPGRIAAGLADLPPEWNAQ SALLRLVVQARVPLRGVPAGMLDDGRWNIVRNEEEALRAERSWLRLHTGIAVAGAASPGEMLAVAAVRRFGPALLHAGTR PALVGLAAGVLGLLGGGLAWLGNFAAGFALLGLAWLAERIASLLGQVERDSLLASGIERRGVALFHLLVDAGIVALAGWR SDLANVPKVPWGGAMFAPLLLVLALRLVPLALPRRKWAHQLEDRFVLGLALAAVSIVLPFDLAVAAGVILVVGACLLALQ AESRDPNPQLTSRQ
Sequences:
>Translated_414_residues MRVAVLSLMEAAGDVPGSLRGYLSIGGRSLLRHQLGFALSLGCKRIIVMSEGISGELVALQHVAEAGGAQFHVVATARAL VPLLPPDDDVFVLGDGLLAMPDAVRELLEAGPAVLTLPVETALPLGFERIDINNAFAAAMRFPGRIAAGLADLPPEWNAQ SALLRLVVQARVPLRGVPAGMLDDGRWNIVRNEEEALRAERSWLRLHTGIAVAGAASPGEMLAVAAVRRFGPALLHAGTR PALVGLAAGVLGLLGGGLAWLGNFAAGFALLGLAWLAERIASLLGQVERDSLLASGIERRGVALFHLLVDAGIVALAGWR SDLANVPKVPWGGAMFAPLLLVLALRLVPLALPRRKWAHQLEDRFVLGLALAAVSIVLPFDLAVAAGVILVVGACLLALQ AESRDPNPQLTSRQ >Mature_414_residues MRVAVLSLMEAAGDVPGSLRGYLSIGGRSLLRHQLGFALSLGCKRIIVMSEGISGELVALQHVAEAGGAQFHVVATARAL VPLLPPDDDVFVLGDGLLAMPDAVRELLEAGPAVLTLPVETALPLGFERIDINNAFAAAMRFPGRIAAGLADLPPEWNAQ SALLRLVVQARVPLRGVPAGMLDDGRWNIVRNEEEALRAERSWLRLHTGIAVAGAASPGEMLAVAAVRRFGPALLHAGTR PALVGLAAGVLGLLGGGLAWLGNFAAGFALLGLAWLAERIASLLGQVERDSLLASGIERRGVALFHLLVDAGIVALAGWR SDLANVPKVPWGGAMFAPLLLVLALRLVPLALPRRKWAHQLEDRFVLGLALAAVSIVLPFDLAVAAGVILVVGACLLALQ AESRDPNPQLTSRQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43371; Mature: 43371
Theoretical pI: Translated: 7.72; Mature: 7.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVAVLSLMEAAGDVPGSLRGYLSIGGRSLLRHQLGFALSLGCKRIIVMSEGISGELVAL CHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH QHVAEAGGAQFHVVATARALVPLLPPDDDVFVLGDGLLAMPDAVRELLEAGPAVLTLPVE HHHHHCCCCEEEEEEEHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHCCCCEEEEEHH TALPLGFERIDINNAFAAAMRFPGRIAAGLADLPPEWNAQSALLRLVVQARVPLRGVPAG HHCCCCCEEEECCHHHHHHHHCCCHHHHCHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCC MLDDGRWNIVRNEEEALRAERSWLRLHTGIAVAGAASPGEMLAVAAVRRFGPALLHAGTR CCCCCCEEEEECHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCHHHHCCCCC PALVGLAAGVLGLLGGGLAWLGNFAAGFALLGLAWLAERIASLLGQVERDSLLASGIERR HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GVALFHLLVDAGIVALAGWRSDLANVPKVPWGGAMFAPLLLVLALRLVPLALPRRKWAHQ CHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH LEDRFVLGLALAAVSIVLPFDLAVAAGVILVVGACLLALQAESRDPNPQLTSRQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure MRVAVLSLMEAAGDVPGSLRGYLSIGGRSLLRHQLGFALSLGCKRIIVMSEGISGELVAL CHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH QHVAEAGGAQFHVVATARALVPLLPPDDDVFVLGDGLLAMPDAVRELLEAGPAVLTLPVE HHHHHCCCCEEEEEEEHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHCCCCEEEEEHH TALPLGFERIDINNAFAAAMRFPGRIAAGLADLPPEWNAQSALLRLVVQARVPLRGVPAG HHCCCCCEEEECCHHHHHHHHCCCHHHHCHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCC MLDDGRWNIVRNEEEALRAERSWLRLHTGIAVAGAASPGEMLAVAAVRRFGPALLHAGTR CCCCCCEEEEECHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCHHHHCCCCC PALVGLAAGVLGLLGGGLAWLGNFAAGFALLGLAWLAERIASLLGQVERDSLLASGIERR HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GVALFHLLVDAGIVALAGWRSDLANVPKVPWGGAMFAPLLLVLALRLVPLALPRRKWAHQ CHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH LEDRFVLGLALAAVSIVLPFDLAVAAGVILVVGACLLALQAESRDPNPQLTSRQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA