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The map label for this gene is cirA [C]

Identifier: 87199898

GI number: 87199898

Start: 1984386

End: 1986902

Strand: Direct

Name: cirA [C]

Synonym: Saro_1881

Alternate gene names: 87199898

Gene position: 1984386-1986902 (Clockwise)

Preceding gene: 87199896

Following gene: 87199899

Centisome position: 55.72

GC content: 62.85

Gene sequence:

>2517_bases
ATGAAGCTGTCATCCCTTTACGCATGTGCATCATTCGTCGCGCTTTCCGGCGCATTCCTTGCTGCGCCCGCAATGGCGCA
GGAAGCTGCCCAGGCCGACGCCGCTGATGCCGTCCCCGAAAGCGTCGGCCTCGACGCGATCGTCGTCACCGCCTCGGGCC
GCGACAAGACGCAGCTCAACACGTCGATTTCGGTCAGCTCGATCTCGGCCGAAACGATCTCGAACCTGAAGCCCAGCTCC
GAAGCCGAAGTCTTCCGCAGCATTCCGGGCATCCAGGTGGCCGGCACATCGGGGCCCGGCGGTAACTCGAACATCGCGGT
TCGCGGCCTTCCGGTCGCCACGGGTGGCTCGCCCTTCGTGCAGATCCAGGAAGATGGTCTGCCGACCGTCCTGTTCGGCG
ACATCCAGTTCGGCAACAACGACTACTGGACCCGCTTCGACGCTTCGGTCGCCAACATCGAGGGCGTTCGCGGTGGTTCG
GCCACGACCTTCGCCTCGCAGGCACCGGGCGCGGTGATCAACTACATCAGCCACACCGGCAAGGATGAAGGCGGTTACGT
CCAGGTCGGCAAGGGTCTTGGCTATGACGAGACCAAGGTCGATTTCCGCTATGGCGGGCCGATCAACGATACCACGTATT
TCCACGTCGGCGGCTTCTTCAAGAACGGCCGTGGCCCGCTGCATGCTGACTATACGGTGTCGGATTCGATCCAGGTCAAG
GGCAACCTGACCAAGGAGTTCGACGGTGGGCGCGGCTATTTCCGCCTGATGTTCAAGTATGCCGACACGCAGGAGCCGAA
CTACACCGGTTCGCCCGCTCTCGCCACGATCAACGGCAAGAAGGTCACGAACATCCGCCCGTTCCCCGGGTTCGACGGTC
GCGACAGCTCGAACTACTCGATCTACAATCAGGATTTCCTCATCTACAACCGCGAGGGCAACCTCGAGCGCACGAAGATG
GACGGCATCACCACCAACGCGAAGTCGTTTGGCGGCCAGTTCCACTATGAGTTCGACGGCGGCATCACCGTCGACAACAA
CATGCGCTACACAGACATGAGCGGCGGCTTCACCTCGCCGTTCCTGAACGTCGCGCGCACGTCGTCGGTGCTGGGTTCGA
CCGTCAACGGTGCGACCGTTGCCACGATCAAGTACGCCAGCGGCCCCAAGGCCGGCGAGGTGTTCACCGGCGAGTATCTC
GACAACAACGTCAACGTCGACACCCGCATCCGCGACATAGGCAGCTTTGCCAATGACCTGACGGTCGCAGGCAAGTTCGA
TGTCGGCACCGGCAAGGTCACCGCGCGCGCCGGCGTGTTCTACATGAACCAGAAGATCGCGATGGACTGGCACGTCAACA
AATCGTTGCGCGAACTGAACGGCGACAATCCATCGCAACTCGACCTGTTCGACAGCGCCGGCAACAAGCTGACCCAGGCC
GGCACCGCGGGCTACAACAACAACTGGGGCAACTGCTGCGCCCGCGACTACGACCTGTCGTATGCAAACACCGCACCTTA
CATGTCGCTCGACTTCGACCATGACCTGTTCGACATCGATGGGTCCGTCCGTTTCGAGCGGGTGAAGGCCAGCGGCTATG
CCATTGGCGGCGGCGATGAGTTCGACGTTGTCAGCGGCGGCGTGACCATCCCGACGATCACATCGGACGGCGTGCGCGAG
GATCTCAACTACACCCGCAGCTACACCTCCTACACGGTCGGTGCGCTGTTCAAGGCCAGCTCGAACCTGTCGATCTTCGC
CCGCACCTCGCGCGGTGGCCGCTTCAACGGCGACCGCCAGACCCTGGGCGGCAAGATCCGCAACGACGGTGCCCTTTGCA
CCTCGGCCGATGCCGCGGCAGGAAACGGAGGCTGCACGGCCGATGGCGTCACGCCTTCGGTTGACTTCGTCAAGCAGCAC
GAACTCGGCATCAAGAGCCGTGGCGGTCTGCTCGGCGGTCGCTTCACGCTGGAACTGACCCTGCTCAAGGGCAGCTTCAA
GCAGTCCACCTACGAACTCTCGGCCACGAAGTGCCCGGGTGGAGCAGGCGGCTGCGTGATCGATGCCAAGTACAAGTCGA
CCGGCGCCGAAATCTTCGCGACCTATCGCAATGGCGGCTTCAGCCTCGTCGGCAACGCCACCTATTCGAAGGCCAAGAAG
CAGGCCGCAGGCGCAAGCAGCTATACCCGCGCTGACGGTATCCCCGACCTGATCTACACTCTCTCGGCGAACTACGACGT
GGGTGAGATCGCGACGTTTGGCCTTGCCGTGACCGGCCAGACCAGCGCCATCGACAGCGCGGGCTACGAGTATCCGGGCA
AGGCGATCTTCAACCCGTCGCTGCGCGTCTATCCGATCCGGAACCTCGAGCTCGGCCTGCAGGTCTACAACGTGTTCGAC
ACGTTCGACCTGCGCGGCAACGGCGGCATCGCGGATGCTTCGGTCAACCCGACCGTCATCAGCGGCGCTCCCGCGCTCGG
CCGCACGGTTTCGGCTTCGGTGCGTTACAGCTTCTGA

Upstream 100 bases:

>100_bases
AATCGATTGCTAAAATCCATTGCAAACGATTGTATGGGGTTGTATCTGACCATTGACTGATTCCTGCGGACTACGCAGGA
GCTTCTTGGTGGGAGGAATT

Downstream 100 bases:

>100_bases
TCCTGGGTGGGCGGCGGCTATAGTCGCCGCTCACCTCGACATCGGAAAAACCAATGACCGGGGGCGGAACGCGACTTGCG
TTTCCGCCCCCGCGTTCCAG

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NB-Dependent Receptor Plug; Nb-Dependent Outer Membrane Receptor Protein; Nb-Dependent Receptor Plug

Number of amino acids: Translated: 838; Mature: 838

Protein sequence:

>838_residues
MKLSSLYACASFVALSGAFLAAPAMAQEAAQADAADAVPESVGLDAIVVTASGRDKTQLNTSISVSSISAETISNLKPSS
EAEVFRSIPGIQVAGTSGPGGNSNIAVRGLPVATGGSPFVQIQEDGLPTVLFGDIQFGNNDYWTRFDASVANIEGVRGGS
ATTFASQAPGAVINYISHTGKDEGGYVQVGKGLGYDETKVDFRYGGPINDTTYFHVGGFFKNGRGPLHADYTVSDSIQVK
GNLTKEFDGGRGYFRLMFKYADTQEPNYTGSPALATINGKKVTNIRPFPGFDGRDSSNYSIYNQDFLIYNREGNLERTKM
DGITTNAKSFGGQFHYEFDGGITVDNNMRYTDMSGGFTSPFLNVARTSSVLGSTVNGATVATIKYASGPKAGEVFTGEYL
DNNVNVDTRIRDIGSFANDLTVAGKFDVGTGKVTARAGVFYMNQKIAMDWHVNKSLRELNGDNPSQLDLFDSAGNKLTQA
GTAGYNNNWGNCCARDYDLSYANTAPYMSLDFDHDLFDIDGSVRFERVKASGYAIGGGDEFDVVSGGVTIPTITSDGVRE
DLNYTRSYTSYTVGALFKASSNLSIFARTSRGGRFNGDRQTLGGKIRNDGALCTSADAAAGNGGCTADGVTPSVDFVKQH
ELGIKSRGGLLGGRFTLELTLLKGSFKQSTYELSATKCPGGAGGCVIDAKYKSTGAEIFATYRNGGFSLVGNATYSKAKK
QAAGASSYTRADGIPDLIYTLSANYDVGEIATFGLAVTGQTSAIDSAGYEYPGKAIFNPSLRVYPIRNLELGLQVYNVFD
TFDLRGNGGIADASVNPTVISGAPALGRTVSASVRYSF

Sequences:

>Translated_838_residues
MKLSSLYACASFVALSGAFLAAPAMAQEAAQADAADAVPESVGLDAIVVTASGRDKTQLNTSISVSSISAETISNLKPSS
EAEVFRSIPGIQVAGTSGPGGNSNIAVRGLPVATGGSPFVQIQEDGLPTVLFGDIQFGNNDYWTRFDASVANIEGVRGGS
ATTFASQAPGAVINYISHTGKDEGGYVQVGKGLGYDETKVDFRYGGPINDTTYFHVGGFFKNGRGPLHADYTVSDSIQVK
GNLTKEFDGGRGYFRLMFKYADTQEPNYTGSPALATINGKKVTNIRPFPGFDGRDSSNYSIYNQDFLIYNREGNLERTKM
DGITTNAKSFGGQFHYEFDGGITVDNNMRYTDMSGGFTSPFLNVARTSSVLGSTVNGATVATIKYASGPKAGEVFTGEYL
DNNVNVDTRIRDIGSFANDLTVAGKFDVGTGKVTARAGVFYMNQKIAMDWHVNKSLRELNGDNPSQLDLFDSAGNKLTQA
GTAGYNNNWGNCCARDYDLSYANTAPYMSLDFDHDLFDIDGSVRFERVKASGYAIGGGDEFDVVSGGVTIPTITSDGVRE
DLNYTRSYTSYTVGALFKASSNLSIFARTSRGGRFNGDRQTLGGKIRNDGALCTSADAAAGNGGCTADGVTPSVDFVKQH
ELGIKSRGGLLGGRFTLELTLLKGSFKQSTYELSATKCPGGAGGCVIDAKYKSTGAEIFATYRNGGFSLVGNATYSKAKK
QAAGASSYTRADGIPDLIYTLSANYDVGEIATFGLAVTGQTSAIDSAGYEYPGKAIFNPSLRVYPIRNLELGLQVYNVFD
TFDLRGNGGIADASVNPTVISGAPALGRTVSASVRYSF
>Mature_838_residues
MKLSSLYACASFVALSGAFLAAPAMAQEAAQADAADAVPESVGLDAIVVTASGRDKTQLNTSISVSSISAETISNLKPSS
EAEVFRSIPGIQVAGTSGPGGNSNIAVRGLPVATGGSPFVQIQEDGLPTVLFGDIQFGNNDYWTRFDASVANIEGVRGGS
ATTFASQAPGAVINYISHTGKDEGGYVQVGKGLGYDETKVDFRYGGPINDTTYFHVGGFFKNGRGPLHADYTVSDSIQVK
GNLTKEFDGGRGYFRLMFKYADTQEPNYTGSPALATINGKKVTNIRPFPGFDGRDSSNYSIYNQDFLIYNREGNLERTKM
DGITTNAKSFGGQFHYEFDGGITVDNNMRYTDMSGGFTSPFLNVARTSSVLGSTVNGATVATIKYASGPKAGEVFTGEYL
DNNVNVDTRIRDIGSFANDLTVAGKFDVGTGKVTARAGVFYMNQKIAMDWHVNKSLRELNGDNPSQLDLFDSAGNKLTQA
GTAGYNNNWGNCCARDYDLSYANTAPYMSLDFDHDLFDIDGSVRFERVKASGYAIGGGDEFDVVSGGVTIPTITSDGVRE
DLNYTRSYTSYTVGALFKASSNLSIFARTSRGGRFNGDRQTLGGKIRNDGALCTSADAAAGNGGCTADGVTPSVDFVKQH
ELGIKSRGGLLGGRFTLELTLLKGSFKQSTYELSATKCPGGAGGCVIDAKYKSTGAEIFATYRNGGFSLVGNATYSKAKK
QAAGASSYTRADGIPDLIYTLSANYDVGEIATFGLAVTGQTSAIDSAGYEYPGKAIFNPSLRVYPIRNLELGLQVYNVFD
TFDLRGNGGIADASVNPTVISGAPALGRTVSASVRYSF

Specific function: Not Yet Known. Postulated To Participate In Iron Transport. Outer Membrane Receptor For Colicins Ia And Ib. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 88613; Mature: 88613

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: PS01295 ISPD ; PS01156 TONB_DEPENDENT_REC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLSSLYACASFVALSGAFLAAPAMAQEAAQADAADAVPESVGLDAIVVTASGRDKTQLN
CCCHHHHHHHHHHHHCCHHHHCCHHHHHHHHCCCHHCCHHHCCCCEEEEEECCCCCEEEE
TSISVSSISAETISNLKPSSEAEVFRSIPGIQVAGTSGPGGNSNIAVRGLPVATGGSPFV
CEEEEEECCHHHHHCCCCCHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEEECCCCCEE
QIQEDGLPTVLFGDIQFGNNDYWTRFDASVANIEGVRGGSATTFASQAPGAVINYISHTG
EEECCCCCEEEEEEEEECCCCCEEEECCCEECCCCCCCCCCEEECCCCCCHHHHHHHHCC
KDEGGYVQVGKGLGYDETKVDFRYGGPINDTTYFHVGGFFKNGRGPLHADYTVSDSIQVK
CCCCCEEEECCCCCCCCCEEEEEECCCCCCCEEEEECCEEECCCCCEEECEEECCCEEEE
GNLTKEFDGGRGYFRLMFKYADTQEPNYTGSPALATINGKKVTNIRPFPGFDGRDSSNYS
CCCEEECCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCEE
IYNQDFLIYNREGNLERTKMDGITTNAKSFGGQFHYEFDGGITVDNNMRYTDMSGGFTSP
EEECEEEEECCCCCCEEEEECCEECCHHHCCCEEEEEECCCEEECCCEEEEECCCCCCCH
FLNVARTSSVLGSTVNGATVATIKYASGPKAGEVFTGEYLDNNVNVDTRIRDIGSFANDL
HHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCCE
TVAGKFDVGTGKVTARAGVFYMNQKIAMDWHVNKSLRELNGDNPSQLDLFDSAGNKLTQA
EEEEEEECCCCCEEEEEEEEEECCEEEEEEECCHHHHHCCCCCCCEEEEECCCCCCEECC
GTAGYNNNWGNCCARDYDLSYANTAPYMSLDFDHDLFDIDGSVRFERVKASGYAIGGGDE
CCCCCCCCCCCCEEECCCCCCCCCCCEEEECCCCCEEECCCCEEEEEEEECCEEECCCCC
FDVVSGGVTIPTITSDGVREDLNYTRSYTSYTVGALFKASSNLSIFARTSRGGRFNGDRQ
EEEEECCEEEEEECCCCHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCHH
TLGGKIRNDGALCTSADAAAGNGGCTADGVTPSVDFVKQHELGIKSRGGLLGGRFTLELT
HCCCEEECCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEECCEEEEEEE
LLKGSFKQSTYELSATKCPGGAGGCVIDAKYKSTGAEIFATYRNGGFSLVGNATYSKAKK
EEECCCCCCEEEEEEECCCCCCCCEEEEEEECCCCEEEEEEEECCCEEEEECCHHHHHHH
QAAGASSYTRADGIPDLIYTLSANYDVGEIATFGLAVTGQTSAIDSAGYEYPGKAIFNPS
HHCCCCCCCCCCCCCCEEEEEECCCCHHHEEEEEEEEECCCCCCCCCCCCCCCCEEECCC
LRVYPIRNLELGLQVYNVFDTFDLRGNGGIADASVNPTVISGAPALGRTVSASVRYSF
EEEEEECCEEECEEEEEEEEEEEECCCCCEECCCCCCEEEECCCCCCCEEEEEEEECC
>Mature Secondary Structure
MKLSSLYACASFVALSGAFLAAPAMAQEAAQADAADAVPESVGLDAIVVTASGRDKTQLN
CCCHHHHHHHHHHHHCCHHHHCCHHHHHHHHCCCHHCCHHHCCCCEEEEEECCCCCEEEE
TSISVSSISAETISNLKPSSEAEVFRSIPGIQVAGTSGPGGNSNIAVRGLPVATGGSPFV
CEEEEEECCHHHHHCCCCCHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEEECCCCCEE
QIQEDGLPTVLFGDIQFGNNDYWTRFDASVANIEGVRGGSATTFASQAPGAVINYISHTG
EEECCCCCEEEEEEEEECCCCCEEEECCCEECCCCCCCCCCEEECCCCCCHHHHHHHHCC
KDEGGYVQVGKGLGYDETKVDFRYGGPINDTTYFHVGGFFKNGRGPLHADYTVSDSIQVK
CCCCCEEEECCCCCCCCCEEEEEECCCCCCCEEEEECCEEECCCCCEEECEEECCCEEEE
GNLTKEFDGGRGYFRLMFKYADTQEPNYTGSPALATINGKKVTNIRPFPGFDGRDSSNYS
CCCEEECCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCEE
IYNQDFLIYNREGNLERTKMDGITTNAKSFGGQFHYEFDGGITVDNNMRYTDMSGGFTSP
EEECEEEEECCCCCCEEEEECCEECCHHHCCCEEEEEECCCEEECCCEEEEECCCCCCCH
FLNVARTSSVLGSTVNGATVATIKYASGPKAGEVFTGEYLDNNVNVDTRIRDIGSFANDL
HHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCCE
TVAGKFDVGTGKVTARAGVFYMNQKIAMDWHVNKSLRELNGDNPSQLDLFDSAGNKLTQA
EEEEEEECCCCCEEEEEEEEEECCEEEEEEECCHHHHHCCCCCCCEEEEECCCCCCEECC
GTAGYNNNWGNCCARDYDLSYANTAPYMSLDFDHDLFDIDGSVRFERVKASGYAIGGGDE
CCCCCCCCCCCCEEECCCCCCCCCCCEEEECCCCCEEECCCCEEEEEEEECCEEECCCCC
FDVVSGGVTIPTITSDGVREDLNYTRSYTSYTVGALFKASSNLSIFARTSRGGRFNGDRQ
EEEEECCEEEEEECCCCHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCHH
TLGGKIRNDGALCTSADAAAGNGGCTADGVTPSVDFVKQHELGIKSRGGLLGGRFTLELT
HCCCEEECCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEECCEEEEEEE
LLKGSFKQSTYELSATKCPGGAGGCVIDAKYKSTGAEIFATYRNGGFSLVGNATYSKAKK
EEECCCCCCEEEEEEECCCCCCCCEEEEEEECCCCEEEEEEEECCCEEEEECCHHHHHHH
QAAGASSYTRADGIPDLIYTLSANYDVGEIATFGLAVTGQTSAIDSAGYEYPGKAIFNPS
HHCCCCCCCCCCCCCCEEEEEECCCCHHHEEEEEEEEECCCCCCCCCCCCCCCCEEECCC
LRVYPIRNLELGLQVYNVFDTFDLRGNGGIADASVNPTVISGAPALGRTVSASVRYSF
EEEEEECCEEECEEEEEEEEEEEECCCCCEECCCCCCEEEECCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA