Click here to switch to the map view.

The map label for this gene is yraR [H]

Identifier: 87199866

GI number: 87199866

Start: 1948878

End: 1949567

Strand: Direct

Name: yraR [H]

Synonym: Saro_1849

Alternate gene names: 87199866

Gene position: 1948878-1949567 (Clockwise)

Preceding gene: 87199865

Following gene: 87199867

Centisome position: 54.72

GC content: 68.55

Gene sequence:

>690_bases
ATGTCTGACCAGACCCGCGTCGTCCTTGTCGGCTCAACCGGCCTGATCGGCCGCGCCGTGATGGCGGAGGCGGTAGGGCG
CCCGGACATTCATCTCGTCGCCGTCGCTCGCCGCGAAGTGCCCCTGCCCAAGGGGGCGCGGATGGAAATGCTGCTGTCCG
ACCCCGAACACTGGCCCGATGCCATCGCCGCTGGTCGCCCGCACACGGTCGTCATTGCGCTGGGCACGACGATCAAGGCG
GTGGGCGGCGACAGGCAGGCCTTTCGCGCGGTCGATCACGATCTGGTGATGGCAGCCGCCGTTGCCGCGAAGGAAGCGGG
TGCGCGGCAGCTCATCGTCGTGTCCTCGGTCGGGGCGCGGTTCTCGTCCAGGAACTTCTACCTCTCGGTCAAGGGTGAGG
TCGAGGACCGTCTTGCCAAGCTGCATTTCGACCGCCTCGACATGATCCGGCCGGGCCTGCTTCGCGGCCATCGCGAGGGC
CCGCCGCGCGCCGGGGAGCGGATCGGCATGATCCTGAGCCCGCTGCTCGACCTCTTGCTGGTGGGCAAGCTGCGCAAGTA
CCGTTCGGCGCGCGACAGCGACGTGGCTCGTGCGATCCTCGCCTTGGCGGGGGCGAAGCAGCGTGGCCGCTTTGTCCACG
AGCATGACGAACTACGCCGTATTCTGGGGCGCGACGTGGGCCGGGGATAA

Upstream 100 bases:

>100_bases
CGGACGCGCCACATCGCGGACTTCATCGCCGGCATGACCGATCGCTATGCGATCGACAGCTATGCCCGGCTCTTCGGCCA
CGCTCCGGAGGGACTCAGCA

Downstream 100 bases:

>100_bases
GCGTGGCGCAGTCCGGTTGACTTCGCCGGGCCGCGCAGCGATGAGGGCGCGTCGCTGATCGCGCGGGAGAGTTCTCTCGA
TTCGTTCAGGATCGAGAGAC

Product: NAD-dependent epimerase/dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MSDQTRVVLVGSTGLIGRAVMAEAVGRPDIHLVAVARREVPLPKGARMEMLLSDPEHWPDAIAAGRPHTVVIALGTTIKA
VGGDRQAFRAVDHDLVMAAAVAAKEAGARQLIVVSSVGARFSSRNFYLSVKGEVEDRLAKLHFDRLDMIRPGLLRGHREG
PPRAGERIGMILSPLLDLLLVGKLRKYRSARDSDVARAILALAGAKQRGRFVHEHDELRRILGRDVGRG

Sequences:

>Translated_229_residues
MSDQTRVVLVGSTGLIGRAVMAEAVGRPDIHLVAVARREVPLPKGARMEMLLSDPEHWPDAIAAGRPHTVVIALGTTIKA
VGGDRQAFRAVDHDLVMAAAVAAKEAGARQLIVVSSVGARFSSRNFYLSVKGEVEDRLAKLHFDRLDMIRPGLLRGHREG
PPRAGERIGMILSPLLDLLLVGKLRKYRSARDSDVARAILALAGAKQRGRFVHEHDELRRILGRDVGRG
>Mature_228_residues
SDQTRVVLVGSTGLIGRAVMAEAVGRPDIHLVAVARREVPLPKGARMEMLLSDPEHWPDAIAAGRPHTVVIALGTTIKAV
GGDRQAFRAVDHDLVMAAAVAAKEAGARQLIVVSSVGARFSSRNFYLSVKGEVEDRLAKLHFDRLDMIRPGLLRGHREGP
PRAGERIGMILSPLLDLLLVGKLRKYRSARDSDVARAILALAGAKQRGRFVHEHDELRRILGRDVGRG

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To yeast YER004W [H]

Homologues:

Organism=Homo sapiens, GI148728172, Length=166, Percent_Identity=33.7349397590361, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI148728168, Length=166, Percent_Identity=33.7349397590361, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI148728164, Length=166, Percent_Identity=33.7349397590361, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI148728166, Length=166, Percent_Identity=33.7349397590361, Blast_Score=75, Evalue=6e-14,
Organism=Escherichia coli, GI87082218, Length=218, Percent_Identity=28.8990825688073, Blast_Score=77, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71983631, Length=219, Percent_Identity=31.9634703196347, Blast_Score=89, Evalue=3e-18,
Organism=Saccharomyces cerevisiae, GI6320840, Length=161, Percent_Identity=34.7826086956522, Blast_Score=79, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000534 [H]

Pfam domain/function: PF01118 Semialdhyde_dh [H]

EC number: NA

Molecular weight: Translated: 24885; Mature: 24754

Theoretical pI: Translated: 11.34; Mature: 11.34

Prosite motif: PS00626 RCC1_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDQTRVVLVGSTGLIGRAVMAEAVGRPDIHLVAVARREVPLPKGARMEMLLSDPEHWPD
CCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEEEEHHCCCCCCCCCEEEEECCCCCCCH
AIAAGRPHTVVIALGTTIKAVGGDRQAFRAVDHDLVMAAAVAAKEAGARQLIVVSSVGAR
HHHCCCCCEEEEEECCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCC
FSSRNFYLSVKGEVEDRLAKLHFDRLDMIRPGLLRGHREGPPRAGERIGMILSPLLDLLL
CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
VGKLRKYRSARDSDVARAILALAGAKQRGRFVHEHDELRRILGRDVGRG
HHHHHHHHCCCHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SDQTRVVLVGSTGLIGRAVMAEAVGRPDIHLVAVARREVPLPKGARMEMLLSDPEHWPD
CCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEEEEHHCCCCCCCCCEEEEECCCCCCCH
AIAAGRPHTVVIALGTTIKAVGGDRQAFRAVDHDLVMAAAVAAKEAGARQLIVVSSVGAR
HHHCCCCCEEEEEECCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCC
FSSRNFYLSVKGEVEDRLAKLHFDRLDMIRPGLLRGHREGPPRAGERIGMILSPLLDLLL
CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
VGKLRKYRSARDSDVARAILALAGAKQRGRFVHEHDELRRILGRDVGRG
HHHHHHHHCCCHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]