| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is yceI [C]
Identifier: 87199728
GI number: 87199728
Start: 1797851
End: 1799113
Strand: Direct
Name: yceI [C]
Synonym: Saro_1711
Alternate gene names: 87199728
Gene position: 1797851-1799113 (Clockwise)
Preceding gene: 87199727
Following gene: 87199734
Centisome position: 50.48
GC content: 66.9
Gene sequence:
>1263_bases ATGACCACGATAAGTCCGGCGCGCTATTCGGCGGCGGCAATCACGCTTCACTGGATGATTGCGTTCCTGCTGCTGTTCCA GATCGGACTGGGCTGGGCGCTGGAGGACCTGCCGGAGGGCGTGGCGCAGTTTGCCGGATACCAGTTCCACAAGTCGGTCG GGATCGCGATCCTCATCCTCAGCCTGGGTCGGCTCGCGGTGCGGCTGGTGAAGCCACGGCCGGCGCCGGTTCCAGCGGGA AGGGCGCAGGCCTTTCTCGCGGCGGCGGTCCACGCGTTGCTCTATGGCGTGATGATCGTCGGGCCGCTTACGGGTTGGAT CATCGTTTCGACCGCCAAGGTGCGATTGCAGACCATGCTGTTCGGCACCGTCCCGTGGCCCGACCTGCCGGTAGGACAAG CGCTGCATGAACCAGCCGAGGTACTTCACGGCTTGCTCGGCACGGTCGGCGTTGCGCTGATCGTGCTGCATGTCGTCGGC GCGATCTATCACCATGTGAAGCGCGAGGACGTGATAGGGCGGATGCTTCCGCGCTCCATCGCGAGCCACAAGGCGATCGG CGTCGCGGCGGGCGTGGCGATTGTCGCGGGTCTGCTGGCGCTTTTCGGTGGACGGACGATGTCCTTCGCCGTGCCGACGG CGGCGCCTTCGGTCGAGGCCTCGTCAGCGCCCGTCGAGGCCGCGTCGCAGGGGGCAGTAGAGGAGATGCCCGAGGCCGCG CCCTCGGAGGTTTCGTCGGAGGCTGCCAGCGCTGTGGCCAAGGCTGCGCCGTGGAAGCTGGAGAAGGGCGGCCGACTGGG CTTTTCCGCCGAATACAGCGGAGAGGCGATCCGGGGCACGTTCAAGCGCTGGGAGGCAGATATCGTGTTCGATCCGGAGG ACCTTGCCGGCTCCTCGATTCGGGTGAACATCGATCTCGCCTCCGTCGAAAGCGGCGATGCCCAGCGCGACGACATGCTG AAGAGCGACAGCTTCTTCGGCGTTGGCGCCGATCCACAGGCCAGGTTCGTTGCAACCTCGATCCGCAAGCGGGGCGAGGG GCGCTATGTCGCGAACGGGACACTGACCCTGCACGGCAAGGCGCGGCCGCTTGCCGTGGCGTTTACGCTGAAGATAGCGG GCGACCGGGCGACGGCCAGCGGCAGCGCAACCTTGCAGCGCCTGGCATTCGGCGTCGGCGAGGCCGAGTGGTCTGCGACG GACCAGTTAAAGGACGCGGTCGGCGTCGACTTCTCGTTGGCGGCGCGGCGGATCAGCCCTTGA
Upstream 100 bases:
>100_bases AAGGCTGGCCCATTTCCGCCTCTTTGCCGCGGACTCGCTGCGGATGGACAAACGGGACGGTTACAGTTCATAGCAGTCCC CGGATTGGGGAGAGCCATCG
Downstream 100 bases:
>100_bases TTCCGGCGAAGAAGAACTCGGAATAGCGTCTGGCCCAGGCTTCGGTCTGGGTCTGGTCATAGCACCGTGCGCCGCCGCTC AGCCGTGCATGGCCGAGGAT
Product: YceI
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 420; Mature: 419
Protein sequence:
>420_residues MTTISPARYSAAAITLHWMIAFLLLFQIGLGWALEDLPEGVAQFAGYQFHKSVGIAILILSLGRLAVRLVKPRPAPVPAG RAQAFLAAAVHALLYGVMIVGPLTGWIIVSTAKVRLQTMLFGTVPWPDLPVGQALHEPAEVLHGLLGTVGVALIVLHVVG AIYHHVKREDVIGRMLPRSIASHKAIGVAAGVAIVAGLLALFGGRTMSFAVPTAAPSVEASSAPVEAASQGAVEEMPEAA PSEVSSEAASAVAKAAPWKLEKGGRLGFSAEYSGEAIRGTFKRWEADIVFDPEDLAGSSIRVNIDLASVESGDAQRDDML KSDSFFGVGADPQARFVATSIRKRGEGRYVANGTLTLHGKARPLAVAFTLKIAGDRATASGSATLQRLAFGVGEAEWSAT DQLKDAVGVDFSLAARRISP
Sequences:
>Translated_420_residues MTTISPARYSAAAITLHWMIAFLLLFQIGLGWALEDLPEGVAQFAGYQFHKSVGIAILILSLGRLAVRLVKPRPAPVPAG RAQAFLAAAVHALLYGVMIVGPLTGWIIVSTAKVRLQTMLFGTVPWPDLPVGQALHEPAEVLHGLLGTVGVALIVLHVVG AIYHHVKREDVIGRMLPRSIASHKAIGVAAGVAIVAGLLALFGGRTMSFAVPTAAPSVEASSAPVEAASQGAVEEMPEAA PSEVSSEAASAVAKAAPWKLEKGGRLGFSAEYSGEAIRGTFKRWEADIVFDPEDLAGSSIRVNIDLASVESGDAQRDDML KSDSFFGVGADPQARFVATSIRKRGEGRYVANGTLTLHGKARPLAVAFTLKIAGDRATASGSATLQRLAFGVGEAEWSAT DQLKDAVGVDFSLAARRISP >Mature_419_residues TTISPARYSAAAITLHWMIAFLLLFQIGLGWALEDLPEGVAQFAGYQFHKSVGIAILILSLGRLAVRLVKPRPAPVPAGR AQAFLAAAVHALLYGVMIVGPLTGWIIVSTAKVRLQTMLFGTVPWPDLPVGQALHEPAEVLHGLLGTVGVALIVLHVVGA IYHHVKREDVIGRMLPRSIASHKAIGVAAGVAIVAGLLALFGGRTMSFAVPTAAPSVEASSAPVEAASQGAVEEMPEAAP SEVSSEAASAVAKAAPWKLEKGGRLGFSAEYSGEAIRGTFKRWEADIVFDPEDLAGSSIRVNIDLASVESGDAQRDDMLK SDSFFGVGADPQARFVATSIRKRGEGRYVANGTLTLHGKARPLAVAFTLKIAGDRATASGSATLQRLAFGVGEAEWSATD QLKDAVGVDFSLAARRISP
Specific function: Unknown
COG id: COG2353
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0312 family. Type 1 subfamily [H]
Homologues:
Organism=Escherichia coli, GI1787295, Length=132, Percent_Identity=34.0909090909091, Blast_Score=70, Evalue=2e-13,
Paralogues:
None
Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007372 [H]
Pfam domain/function: PF04264 YceI [H]
EC number: NA
Molecular weight: Translated: 43991; Mature: 43860
Theoretical pI: Translated: 8.81; Mature: 8.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTISPARYSAAAITLHWMIAFLLLFQIGLGWALEDLPEGVAQFAGYQFHKSVGIAILIL CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH SLGRLAVRLVKPRPAPVPAGRAQAFLAAAVHALLYGVMIVGPLTGWIIVSTAKVRLQTML HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHEEHHH FGTVPWPDLPVGQALHEPAEVLHGLLGTVGVALIVLHVVGAIYHHVKREDVIGRMLPRSI EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ASHKAIGVAAGVAIVAGLLALFGGRTMSFAVPTAAPSVEASSAPVEAASQGAVEEMPEAA HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHCCCHHHCCCCC PSEVSSEAASAVAKAAPWKLEKGGRLGFSAEYSGEAIRGTFKRWEADIVFDPEDLAGSSI CHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCHHHCCCEE RVNIDLASVESGDAQRDDMLKSDSFFGVGADPQARFVATSIRKRGEGRYVANGTLTLHGK EEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCEEEEECC ARPLAVAFTLKIAGDRATASGSATLQRLAFGVGEAEWSATDQLKDAVGVDFSLAARRISP CCEEEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHCCCC >Mature Secondary Structure TTISPARYSAAAITLHWMIAFLLLFQIGLGWALEDLPEGVAQFAGYQFHKSVGIAILIL CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH SLGRLAVRLVKPRPAPVPAGRAQAFLAAAVHALLYGVMIVGPLTGWIIVSTAKVRLQTML HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHEEHHH FGTVPWPDLPVGQALHEPAEVLHGLLGTVGVALIVLHVVGAIYHHVKREDVIGRMLPRSI EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ASHKAIGVAAGVAIVAGLLALFGGRTMSFAVPTAAPSVEASSAPVEAASQGAVEEMPEAA HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHCCCHHHCCCCC PSEVSSEAASAVAKAAPWKLEKGGRLGFSAEYSGEAIRGTFKRWEADIVFDPEDLAGSSI CHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCHHHCCCEE RVNIDLASVESGDAQRDDMLKSDSFFGVGADPQARFVATSIRKRGEGRYVANGTLTLHGK EEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCEEEEECC ARPLAVAFTLKIAGDRATASGSATLQRLAFGVGEAEWSATDQLKDAVGVDFSLAARRISP CCEEEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 14528314 [H]