| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is fyuA [H]
Identifier: 87199725
GI number: 87199725
Start: 1793755
End: 1796181
Strand: Direct
Name: fyuA [H]
Synonym: Saro_1708
Alternate gene names: 87199725
Gene position: 1793755-1796181 (Clockwise)
Preceding gene: 87199724
Following gene: 87199727
Centisome position: 50.36
GC content: 64.65
Gene sequence:
>2427_bases ATGAACTTCCGCGTCCTTCTCGCGGGCGGCGCCGCTCCGCTCGCCCTCATCGCGCCTGGCGCCTTCGCCGCCGAAGCGCC TGTTGAAGCCGTCCCCACCGCTACCGCGCCTGTAGATGCCCCTGCCGATGCGCAGGTCTCGTCGGCCGGCACCGGAGCCA ATGACAGCGGCGATATCGTCGTCACCGCTCGCCGCCGCGCCGAAACCGCGCAGGACGTGCCGCTGGCCATCTCGGTCGTG GGTGGCGAGCATATCGACAGCACCGGCAGTTTCAACGTCGGCCGCCTCCAGCAGTTGACCCCGACGTTGCAGTTCTATTC GTCGAACCCGCGCAACACCGCCGTGAACATCCGCGGCCTTGGCGTGCCGTTCGGCCTGACCAACGACGGGATCGAGCAGG GCGTCGGCATCTATGTGGACGACGTCTACAACTCGCGCGTGGCATCGGCGACGTTCGACTTCCTCGACGTGAAGCAGATC GAAGTCCTGCGCGGGCCGCAGGGCACGCTCTACGGCAAGAACACTACCGCCGGCGCGATCAACATCACCACCAACCAGCC GACCTTCGACTTCGAAGGCAAGGCCGAGGTGAGCGTGGGGAACCTCAACTTCGTGCAGGCCAAGGGCGCGATTTCCGGGC CGATCACCGATACGCTGGCCGCGCGCTTCGCGGTTTCGTCGACCAGCCGGCGCGGCACGATCTACAACGTGACCACCAAC CAGTGGATCCAGAGCCAGGATAACCTGGGCCTGCGCGGCCAGCTCCTGTTCAAGCCAAGCGAGGCCTTCAGCATCACGCT TGCCGGCGACTACAGCGAGCAGGATGCGGTGTGCTGCGGTTCGGTCTACGTCCGCACCGGCACCACCCAGCGCGCGACGA ACCGCCAGTTTGCCGCGCTCGCGGCGGCGCAGGGCTATACCGTGCCCAGCACCAATCCCTTCGACCGCCTGACCGACCTC GATTCCGCGCTCCAGGCGGGCAACAAGATCGGCGGCGTTTCGCTGAAGGTGAAGTGGGACGTGGGACCGGGTACGCTGAC TTCGGTCACCGCCTGGCGCTTCTGGGACTGGAAGCCGCAGAACGACCGTGACTTCACCGGCCTGCCTATCGTGGCGAAGT CGCAGAACCCGTCGCAGCAGGACCAGTACACGCAGGAACTGCGCTACAACTATAGCGGCGACAGCCTCGACTTCGTGCTC GGCGCGTTCGGCTTCTACCAGCGCATCGACACCCAGGGCACCGAAGCTCACGGCAGTGCTTCGACCAAGTGGAACGTGAA CCCGTCCAGTTCGCTCTACAACACGCAGGTCCTCGACGGGCTGACCGCGCTCAACACGCAGTACCTCAAGAACACGAGCC TTGCCGTGTTCGGGCAGGCAAGCTGGAAGGTGACCCCGGAACTGACGCTGCAACCGGGCATCCGCGTGAACTACGACAAG AAGGACGGCTTCTACCAGCGCCGGGTGTTCACTGGCGCCGGCACCGAGATCCTTCTCGACGGTACAACCAGCGCCACCAA GACCGCGCAGCTGGCGATCTTCACGCCGCAGACGATCTCGCCCAGCTTCAGCGACTGGAACTTCAGCTACGACTTTACCG CGAGCTACAAGGTGGCGAGAGGCGTGCTGGTCTATGCAACTTACGCCAAGACCTTCAAGTCGGGCGGCATCAACCAGAAC GGCGTGCCGGTGGATGCGTCGAACAACCCGATCCTGGCGGCGGCGACGGTGAAGCCGGAATCGGTCCAGCATTACGAGGC GGGCATCAAGACCGAGTTCTGGGATCGCCGCGCGATCTTCAACCTTTCGGCCTTCCGCACCGACATCAAGGACTACCAGG CCAACGTCAACAACGGACAGTTCGGTGTGCTGCGCGGTTACCTGGCGAATGCCGGGGCGGTTCGTTCGCAGGGTATCGAG GCCGACTTCTCGGTCCGTCCGAGCGAACGGTTCAACGCCTACGTGAACAGCGCCTACACCGACGCGACCTATCGCAAGTT CGTCGATGCCCCGTGCCCGCCAGAGCTTTCCGGCGGCACCAGCAGCCCGGCCAACTGCGACATTTCGGGCCAGCGCCTGC CGGGCGTTTCGAAGTGGTCGTTCTCTTTCGGGTTCGAGGCCAATGCGCCGGTCGAGTTCCTGAAGCAGGACGGGCAGGTC TACTTGGGGTACGACGGAAGCTATCGGTCGGACTTCTCGTCCAACCCGACGCCTTCGGCCTATACCTGGATCGATGGCTA TTCGCTGTCGAACTTCCGGCTGGGCTTCCGGACCGACGCGGGCCTGGACGTCTATGGCTGGGTTCGCAACGCCTTCGACC AGGACTACTTCGAGCAGCTCTTCGTCGGCCCGGGCAATACCGGCCTGATCGCGGGCCTGCCGGGCGATCCGAGGACCTGG GGCTTCACCGTCCGCACGAACTTCTGA
Upstream 100 bases:
>100_bases ACTGATCGCCACGCACACCTGAAAACAGAACAAAAACAACCGTACCCGCTGACCGGTCCACCGGAAGCATCGTTCGGGAA AACCCACATGAGGTCCTACG
Downstream 100 bases:
>100_bases ACCACCCCGCACTGCTGCGGCAACTTGGGCCGGCGGAGCGATCCGCCGGCCCATTCGTGCTTCAGTTGTTGCCGCCGATG AAGTCGCCCAATCCGCCAAG
Product: TonB-dependent receptor
Products: NA
Alternate protein names: IPR65; IRPC [H]
Number of amino acids: Translated: 808; Mature: 808
Protein sequence:
>808_residues MNFRVLLAGGAAPLALIAPGAFAAEAPVEAVPTATAPVDAPADAQVSSAGTGANDSGDIVVTARRRAETAQDVPLAISVV GGEHIDSTGSFNVGRLQQLTPTLQFYSSNPRNTAVNIRGLGVPFGLTNDGIEQGVGIYVDDVYNSRVASATFDFLDVKQI EVLRGPQGTLYGKNTTAGAINITTNQPTFDFEGKAEVSVGNLNFVQAKGAISGPITDTLAARFAVSSTSRRGTIYNVTTN QWIQSQDNLGLRGQLLFKPSEAFSITLAGDYSEQDAVCCGSVYVRTGTTQRATNRQFAALAAAQGYTVPSTNPFDRLTDL DSALQAGNKIGGVSLKVKWDVGPGTLTSVTAWRFWDWKPQNDRDFTGLPIVAKSQNPSQQDQYTQELRYNYSGDSLDFVL GAFGFYQRIDTQGTEAHGSASTKWNVNPSSSLYNTQVLDGLTALNTQYLKNTSLAVFGQASWKVTPELTLQPGIRVNYDK KDGFYQRRVFTGAGTEILLDGTTSATKTAQLAIFTPQTISPSFSDWNFSYDFTASYKVARGVLVYATYAKTFKSGGINQN GVPVDASNNPILAAATVKPESVQHYEAGIKTEFWDRRAIFNLSAFRTDIKDYQANVNNGQFGVLRGYLANAGAVRSQGIE ADFSVRPSERFNAYVNSAYTDATYRKFVDAPCPPELSGGTSSPANCDISGQRLPGVSKWSFSFGFEANAPVEFLKQDGQV YLGYDGSYRSDFSSNPTPSAYTWIDGYSLSNFRLGFRTDAGLDVYGWVRNAFDQDYFEQLFVGPGNTGLIAGLPGDPRTW GFTVRTNF
Sequences:
>Translated_808_residues MNFRVLLAGGAAPLALIAPGAFAAEAPVEAVPTATAPVDAPADAQVSSAGTGANDSGDIVVTARRRAETAQDVPLAISVV GGEHIDSTGSFNVGRLQQLTPTLQFYSSNPRNTAVNIRGLGVPFGLTNDGIEQGVGIYVDDVYNSRVASATFDFLDVKQI EVLRGPQGTLYGKNTTAGAINITTNQPTFDFEGKAEVSVGNLNFVQAKGAISGPITDTLAARFAVSSTSRRGTIYNVTTN QWIQSQDNLGLRGQLLFKPSEAFSITLAGDYSEQDAVCCGSVYVRTGTTQRATNRQFAALAAAQGYTVPSTNPFDRLTDL DSALQAGNKIGGVSLKVKWDVGPGTLTSVTAWRFWDWKPQNDRDFTGLPIVAKSQNPSQQDQYTQELRYNYSGDSLDFVL GAFGFYQRIDTQGTEAHGSASTKWNVNPSSSLYNTQVLDGLTALNTQYLKNTSLAVFGQASWKVTPELTLQPGIRVNYDK KDGFYQRRVFTGAGTEILLDGTTSATKTAQLAIFTPQTISPSFSDWNFSYDFTASYKVARGVLVYATYAKTFKSGGINQN GVPVDASNNPILAAATVKPESVQHYEAGIKTEFWDRRAIFNLSAFRTDIKDYQANVNNGQFGVLRGYLANAGAVRSQGIE ADFSVRPSERFNAYVNSAYTDATYRKFVDAPCPPELSGGTSSPANCDISGQRLPGVSKWSFSFGFEANAPVEFLKQDGQV YLGYDGSYRSDFSSNPTPSAYTWIDGYSLSNFRLGFRTDAGLDVYGWVRNAFDQDYFEQLFVGPGNTGLIAGLPGDPRTW GFTVRTNF >Mature_808_residues MNFRVLLAGGAAPLALIAPGAFAAEAPVEAVPTATAPVDAPADAQVSSAGTGANDSGDIVVTARRRAETAQDVPLAISVV GGEHIDSTGSFNVGRLQQLTPTLQFYSSNPRNTAVNIRGLGVPFGLTNDGIEQGVGIYVDDVYNSRVASATFDFLDVKQI EVLRGPQGTLYGKNTTAGAINITTNQPTFDFEGKAEVSVGNLNFVQAKGAISGPITDTLAARFAVSSTSRRGTIYNVTTN QWIQSQDNLGLRGQLLFKPSEAFSITLAGDYSEQDAVCCGSVYVRTGTTQRATNRQFAALAAAQGYTVPSTNPFDRLTDL DSALQAGNKIGGVSLKVKWDVGPGTLTSVTAWRFWDWKPQNDRDFTGLPIVAKSQNPSQQDQYTQELRYNYSGDSLDFVL GAFGFYQRIDTQGTEAHGSASTKWNVNPSSSLYNTQVLDGLTALNTQYLKNTSLAVFGQASWKVTPELTLQPGIRVNYDK KDGFYQRRVFTGAGTEILLDGTTSATKTAQLAIFTPQTISPSFSDWNFSYDFTASYKVARGVLVYATYAKTFKSGGINQN GVPVDASNNPILAAATVKPESVQHYEAGIKTEFWDRRAIFNLSAFRTDIKDYQANVNNGQFGVLRGYLANAGAVRSQGIE ADFSVRPSERFNAYVNSAYTDATYRKFVDAPCPPELSGGTSSPANCDISGQRLPGVSKWSFSFGFEANAPVEFLKQDGQV YLGYDGSYRSDFSSNPTPSAYTWIDGYSLSNFRLGFRTDAGLDVYGWVRNAFDQDYFEQLFVGPGNTGLIAGLPGDPRTW GFTVRTNF
Specific function: Receptor for the bacteriocin pesticin and for the siderophore yersiniabactin [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 87234; Mature: 87234
Theoretical pI: Translated: 5.10; Mature: 5.10
Prosite motif: PS01156 TONB_DEPENDENT_REC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.1 %Met (Translated Protein) 0.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.1 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNFRVLLAGGAAPLALIAPGAFAAEAPVEAVPTATAPVDAPADAQVSSAGTGANDSGDIV CCEEEEEECCCCCEEEECCCCCCCCCCCHHCCCCCCCCCCCCCCEECCCCCCCCCCCCEE VTARRRAETAQDVPLAISVVGGEHIDSTGSFNVGRLQQLTPTLQFYSSNPRNTAVNIRGL EEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHCCEEEEECCCCCCEEEEEEEE GVPFGLTNDGIEQGVGIYVDDVYNSRVASATFDFLDVKQIEVLRGPQGTLYGKNTTAGAI CCCCCCCCCHHHCCCCEEEECCCCCCHHHCEECHHCCEEEEEEECCCCEEEECCCCCEEE NITTNQPTFDFEGKAEVSVGNLNFVQAKGAISGPITDTLAARFAVSSTSRRGTIYNVTTN EEECCCCCCCCCCCEEEEECCEEEEEECCCCCCCCHHHHHHHHEECCCCCCCEEEEEECC QWIQSQDNLGLRGQLLFKPSEAFSITLAGDYSEQDAVCCGSVYVRTGTTQRATNRQFAAL HHHCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCEEECEEEEECCCCCCCCCCCEEEE AAAQGYTVPSTNPFDRLTDLDSALQAGNKIGGVSLKVKWDVGPGTLTSVTAWRFWDWKPQ EHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCEEEEEEEEEECCCCC NDRDFTGLPIVAKSQNPSQQDQYTQELRYNYSGDSLDFVLGAFGFYQRIDTQGTEAHGSA CCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC STKWNVNPSSSLYNTQVLDGLTALNTQYLKNTSLAVFGQASWKVTPELTLQPGIRVNYDK CEEECCCCCCCCCCHHHHHHHHHHCHHHHCCCCEEEEECCCEEECCCEEECCCCEEEECC KDGFYQRRVFTGAGTEILLDGTTSATKTAQLAIFTPQTISPSFSDWNFSYDFTASYKVAR CCCCEEEEEEECCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCHHHC GVLVYATYAKTFKSGGINQNGVPVDASNNPILAAATVKPESVQHYEAGIKTEFWDRRAIF CEEEEEEEHHHHHCCCCCCCCEEECCCCCCEEEEEECCCCHHHHHHCCCCCCCCCCEEEE NLSAFRTDIKDYQANVNNGQFGVLRGYLANAGAVRSQGIEADFSVRPSERFNAYVNSAYT EHHHHHHHHHHHHCCCCCCCEEEEEHHHHCCCCHHHCCCCCCEECCCHHHHHHHHCCCCC DATYRKFVDAPCPPELSGGTSSPANCDISGQRLPGVSKWSFSFGFEANAPVEFLKQDGQV CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCE YLGYDGSYRSDFSSNPTPSAYTWIDGYSLSNFRLGFRTDAGLDVYGWVRNAFDQDYFEQL EEEECCCCCCCCCCCCCCCEEEEECCCEECCEEEEEECCCCCCHHHHHHHHCCHHHHHHH FVGPGNTGLIAGLPGDPRTWGFTVRTNF EECCCCCCEEEECCCCCCEEEEEEEECC >Mature Secondary Structure MNFRVLLAGGAAPLALIAPGAFAAEAPVEAVPTATAPVDAPADAQVSSAGTGANDSGDIV CCEEEEEECCCCCEEEECCCCCCCCCCCHHCCCCCCCCCCCCCCEECCCCCCCCCCCCEE VTARRRAETAQDVPLAISVVGGEHIDSTGSFNVGRLQQLTPTLQFYSSNPRNTAVNIRGL EEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHCCEEEEECCCCCCEEEEEEEE GVPFGLTNDGIEQGVGIYVDDVYNSRVASATFDFLDVKQIEVLRGPQGTLYGKNTTAGAI CCCCCCCCCHHHCCCCEEEECCCCCCHHHCEECHHCCEEEEEEECCCCEEEECCCCCEEE NITTNQPTFDFEGKAEVSVGNLNFVQAKGAISGPITDTLAARFAVSSTSRRGTIYNVTTN EEECCCCCCCCCCCEEEEECCEEEEEECCCCCCCCHHHHHHHHEECCCCCCCEEEEEECC QWIQSQDNLGLRGQLLFKPSEAFSITLAGDYSEQDAVCCGSVYVRTGTTQRATNRQFAAL HHHCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCEEECEEEEECCCCCCCCCCCEEEE AAAQGYTVPSTNPFDRLTDLDSALQAGNKIGGVSLKVKWDVGPGTLTSVTAWRFWDWKPQ EHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCEEEEEEEEEECCCCC NDRDFTGLPIVAKSQNPSQQDQYTQELRYNYSGDSLDFVLGAFGFYQRIDTQGTEAHGSA CCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC STKWNVNPSSSLYNTQVLDGLTALNTQYLKNTSLAVFGQASWKVTPELTLQPGIRVNYDK CEEECCCCCCCCCCHHHHHHHHHHCHHHHCCCCEEEEECCCEEECCCEEECCCCEEEECC KDGFYQRRVFTGAGTEILLDGTTSATKTAQLAIFTPQTISPSFSDWNFSYDFTASYKVAR CCCCEEEEEEECCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCHHHC GVLVYATYAKTFKSGGINQNGVPVDASNNPILAAATVKPESVQHYEAGIKTEFWDRRAIF CEEEEEEEHHHHHCCCCCCCCEEECCCCCCEEEEEECCCCHHHHHHCCCCCCCCCCEEEE NLSAFRTDIKDYQANVNNGQFGVLRGYLANAGAVRSQGIEADFSVRPSERFNAYVNSAYT EHHHHHHHHHHHHCCCCCCCEEEEEHHHHCCCCHHHCCCCCCEECCCHHHHHHHHCCCCC DATYRKFVDAPCPPELSGGTSSPANCDISGQRLPGVSKWSFSFGFEANAPVEFLKQDGQV CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCE YLGYDGSYRSDFSSNPTPSAYTWIDGYSLSNFRLGFRTDAGLDVYGWVRNAFDQDYFEQL EEEECCCCCCCCCCCCCCCEEEEECCCEECCEEEEEECCCCCCHHHHHHHHCCHHHHHHH FVGPGNTGLIAGLPGDPRTWGFTVRTNF EECCCCCCEEEECCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA