Definition Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome.
Accession NC_007794
Length 3,561,584

Click here to switch to the map view.

The map label for this gene is 87199622

Identifier: 87199622

GI number: 87199622

Start: 1672565

End: 1673287

Strand: Direct

Name: 87199622

Synonym: Saro_1605

Alternate gene names: NA

Gene position: 1672565-1673287 (Clockwise)

Preceding gene: 87199621

Following gene: 87199623

Centisome position: 46.96

GC content: 67.63

Gene sequence:

>723_bases
ATGAGCCAGCACGCCGTCCTCGACAGCCTCTCCCACCGCGACCTGCGCGTCCGTACCGAGCGTTCCGCGGCGCTGGGCGA
TGCGGTTATGGCCTGCCTTGTCATGCCGCAGGAGTTCCGCAAGGCACAGGCGCACTATCCCATCGTGTTCCGGCGCGATG
CGGAGACCGGCCGCTTTTCCGCGCTCGCCCTGTTCGGGTTCGAGAACGGGGAGAACCTGTTCCTGGGCGAAAGCGGGTGG
GATGCCGGCTATGTCCCGCTGGCCCATTCGATACAGCCCTTCCTGATCGGCCGGACCGCGATCGAGGACGAGACCCCGCA
AGTTCACGTGGACTTTGCCAGCGCACGCATCGTGCAGGATCGCGAAGAGGGGGTGCGGCTGTTCGACGAGGCCGGTCAGC
CGACCCCGTTGCTCGAGGAGGTGGCGCAGGACCTTGGCGACCTCGATGCCGCCTTCCGCGCCTCGCCGGCCTTCTTCGCA
GCGCTCGAGCGGCACGATCTGCTCGAACCCTTCACGCTCGACGTCCCGCTCGATGATGGCTCGCGCCATTCGCTTGTCGG
CTTCCACATCGTCAACGAGGAGCGCCTGCGCGCGCTCGATGGCGATGCGCTGTCCGACCTCCAGTCGGGTGGGCACCTCC
TGCCCCTGTTCATGGCGGTCGCATCCGTGGGCCGGTTCTCCGATCTCGTCGCGCGCAAGAACCGCCGTGTTGCCGGGGCC
TGA

Upstream 100 bases:

>100_bases
ATGACGTGGCGCAGCGCACCCGCGCCTTGTGTGCCGCGCTGCCGACGAACCGCAGCTACCTGTCTTCCCTCATGCCCGCG
CAAGGAGCCGCCGCCCTCCC

Downstream 100 bases:

>100_bases
CACGCTGCCCGCGGTCGAGGAGATCGCGGTTGCCGAGCTTGGCGACCGCATCGCTTCGGTCCCGCAACCCGTCGTGGTGC
GCGGTCTGGTGCGAGACTGG

Product: SapC

Products: NA

Alternate protein names: SapC Related Protein; SapC-Related Protein; SapC-Like Protein; SapC Protein; SapC Superfamily Protein; Sapc Family Protein

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MSQHAVLDSLSHRDLRVRTERSAALGDAVMACLVMPQEFRKAQAHYPIVFRRDAETGRFSALALFGFENGENLFLGESGW
DAGYVPLAHSIQPFLIGRTAIEDETPQVHVDFASARIVQDREEGVRLFDEAGQPTPLLEEVAQDLGDLDAAFRASPAFFA
ALERHDLLEPFTLDVPLDDGSRHSLVGFHIVNEERLRALDGDALSDLQSGGHLLPLFMAVASVGRFSDLVARKNRRVAGA

Sequences:

>Translated_240_residues
MSQHAVLDSLSHRDLRVRTERSAALGDAVMACLVMPQEFRKAQAHYPIVFRRDAETGRFSALALFGFENGENLFLGESGW
DAGYVPLAHSIQPFLIGRTAIEDETPQVHVDFASARIVQDREEGVRLFDEAGQPTPLLEEVAQDLGDLDAAFRASPAFFA
ALERHDLLEPFTLDVPLDDGSRHSLVGFHIVNEERLRALDGDALSDLQSGGHLLPLFMAVASVGRFSDLVARKNRRVAGA
>Mature_239_residues
SQHAVLDSLSHRDLRVRTERSAALGDAVMACLVMPQEFRKAQAHYPIVFRRDAETGRFSALALFGFENGENLFLGESGWD
AGYVPLAHSIQPFLIGRTAIEDETPQVHVDFASARIVQDREEGVRLFDEAGQPTPLLEEVAQDLGDLDAAFRASPAFFAA
LERHDLLEPFTLDVPLDDGSRHSLVGFHIVNEERLRALDGDALSDLQSGGHLLPLFMAVASVGRFSDLVARKNRRVAGA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26389; Mature: 26258

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQHAVLDSLSHRDLRVRTERSAALGDAVMACLVMPQEFRKAQAHYPIVFRRDAETGRFS
CCCHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEEEECCCCCCEE
ALALFGFENGENLFLGESGWDAGYVPLAHSIQPFLIGRTAIEDETPQVHVDFASARIVQD
EEEEEEECCCCEEEEECCCCCCCCCCHHHCCCHHEECCHHCCCCCCEEEEEHHHHHHHHC
REEGVRLFDEAGQPTPLLEEVAQDLGDLDAAFRASPAFFAALERHDLLEPFTLDVPLDDG
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCC
SRHSLVGFHIVNEERLRALDGDALSDLQSGGHLLPLFMAVASVGRFSDLVARKNRRVAGA
CCCEEEEEEEECHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SQHAVLDSLSHRDLRVRTERSAALGDAVMACLVMPQEFRKAQAHYPIVFRRDAETGRFS
CCHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEEEECCCCCCEE
ALALFGFENGENLFLGESGWDAGYVPLAHSIQPFLIGRTAIEDETPQVHVDFASARIVQD
EEEEEEECCCCEEEEECCCCCCCCCCHHHCCCHHEECCHHCCCCCCEEEEEHHHHHHHHC
REEGVRLFDEAGQPTPLLEEVAQDLGDLDAAFRASPAFFAALERHDLLEPFTLDVPLDDG
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCC
SRHSLVGFHIVNEERLRALDGDALSDLQSGGHLLPLFMAVASVGRFSDLVARKNRRVAGA
CCCEEEEEEEECHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA