| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87199487
Identifier: 87199487
GI number: 87199487
Start: 1506861
End: 1507511
Strand: Direct
Name: 87199487
Synonym: Saro_1467
Alternate gene names: NA
Gene position: 1506861-1507511 (Clockwise)
Preceding gene: 87199486
Following gene: 87199490
Centisome position: 42.31
GC content: 65.44
Gene sequence:
>651_bases ATGGCCATGGTTTCAATGGAAGAATTGCAGGCGCTGGCGCGCGGCGCCACCGCCATCGAAGGTGATCCGCTTTCGGCTTG CGATGCCGCGCTGATCCGGTATGCGGTGGCCGCTTCGGTGACCTCGCTCGATCGCGACGCGATTGCTGCGGCAACGGCCG AGGCGCTTGCTGCCGGGGCGACGCCCGGGCAGGTCCAGGAAATCCTAGCGCTGGTCTCCGGGCTCGGGGTCCACTCGCTG ATGGCCTCATGCACAACGCTGGTCGAGCAGGCCCGCGTGGCCGGTTGCCCGTTTTCCGATGCGTTTACAACCGAGCAGCA GGCCTTGTGGGACAGGCATGTCGGCAATGACCCGTTCTGGACCGGCTTCGAACGCGAATTGCCGGGGTTCCTCCGGGCGA TGCTGCAGATCAGCACTGACCAGTTCGAGGCGTTCTTCACCTACTGCGCAGTGCCCTGGAAGAACCGCCTCGTGCGTGCC AAGATCAAGGAACTGGCCGCTATGGCGTGCGACGTGACGCCGGGCCACCGGTTTGCACCGGGCTTCAGGCTGCATCTGGC CAATGCGGTAGAGTTGGGGGCAGGGCGGCTCGCGATCCAGGAAACGCTGGTGATCGCGGCGGCGGCACCACTACACCAGG GCACCTTCTGA
Upstream 100 bases:
>100_bases GGCCTCTTTCAACGATTATGTTGACGAGTTGGCATGCCTCAGTCAACAGTAAAGTTGACTAGTTTGGTGCATGGCGCCAC GGTGCTGAGGAGGGAGGTGC
Downstream 100 bases:
>100_bases ACCGAAGGTCGTAGCGCGCTCAATCACAAGAAAGGGCGGCTCAAGGAGCCGCCCTTCGCAGTTTGAGTGGCCGGGCCGAA GCCCGGCCACACCGTCAGTT
Product: hypothetical protein
Products: NA
Alternate protein names: Gamma-Carboxymuconolactone Decarboxylase Subunit
Number of amino acids: Translated: 216; Mature: 215
Protein sequence:
>216_residues MAMVSMEELQALARGATAIEGDPLSACDAALIRYAVAASVTSLDRDAIAAATAEALAAGATPGQVQEILALVSGLGVHSL MASCTTLVEQARVAGCPFSDAFTTEQQALWDRHVGNDPFWTGFERELPGFLRAMLQISTDQFEAFFTYCAVPWKNRLVRA KIKELAAMACDVTPGHRFAPGFRLHLANAVELGAGRLAIQETLVIAAAAPLHQGTF
Sequences:
>Translated_216_residues MAMVSMEELQALARGATAIEGDPLSACDAALIRYAVAASVTSLDRDAIAAATAEALAAGATPGQVQEILALVSGLGVHSL MASCTTLVEQARVAGCPFSDAFTTEQQALWDRHVGNDPFWTGFERELPGFLRAMLQISTDQFEAFFTYCAVPWKNRLVRA KIKELAAMACDVTPGHRFAPGFRLHLANAVELGAGRLAIQETLVIAAAAPLHQGTF >Mature_215_residues AMVSMEELQALARGATAIEGDPLSACDAALIRYAVAASVTSLDRDAIAAATAEALAAGATPGQVQEILALVSGLGVHSLM ASCTTLVEQARVAGCPFSDAFTTEQQALWDRHVGNDPFWTGFERELPGFLRAMLQISTDQFEAFFTYCAVPWKNRLVRAK IKELAAMACDVTPGHRFAPGFRLHLANAVELGAGRLAIQETLVIAAAAPLHQGTF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22917; Mature: 22786
Theoretical pI: Translated: 5.00; Mature: 5.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAMVSMEELQALARGATAIEGDPLSACDAALIRYAVAASVTSLDRDAIAAATAEALAAGA CCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC TPGQVQEILALVSGLGVHSLMASCTTLVEQARVAGCPFSDAFTTEQQALWDRHVGNDPFW CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCC TGFERELPGFLRAMLQISTDQFEAFFTYCAVPWKNRLVRAKIKELAAMACDVTPGHRFAP CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC GFRLHLANAVELGAGRLAIQETLVIAAAAPLHQGTF CCEEEHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure AMVSMEELQALARGATAIEGDPLSACDAALIRYAVAASVTSLDRDAIAAATAEALAAGA CCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC TPGQVQEILALVSGLGVHSLMASCTTLVEQARVAGCPFSDAFTTEQQALWDRHVGNDPFW CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCC TGFERELPGFLRAMLQISTDQFEAFFTYCAVPWKNRLVRAKIKELAAMACDVTPGHRFAP CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC GFRLHLANAVELGAGRLAIQETLVIAAAAPLHQGTF CCEEEHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA