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The map label for this gene is rimM

Identifier: 87199427

GI number: 87199427

Start: 1449504

End: 1450004

Strand: Direct

Name: rimM

Synonym: Saro_1406

Alternate gene names: 87199427

Gene position: 1449504-1450004 (Clockwise)

Preceding gene: 87199426

Following gene: 87199428

Centisome position: 40.7

GC content: 65.87

Gene sequence:

>501_bases
TTGCGCGACCGGCCCGTCACGCTCGCCGCCATTACCGGCGCGCATGGAGTGGCGGGCGAGGTCCGCTTGAAGCTGTTCGG
TGAAGGCGTGGCGGCGCTGAAGCGCTACCGCGCCTTCAACGATTCAGGCGATGGTTCCGGGCTGACCGTGGTGAAGATCA
AGGACGACGGCAAGGGTGGCGCGATTGCCCGCTTTGCCGAAGTGCCCGATCGCACGGCGGCGGAGAAGCTGCGCGGCACG
GCGCTGACCGTGCGCCGGTCGGAATTGCCCTCTCTGCCCGAGGGCGAGTATTACCACGCCGACCTGATCGGCCTGCCTGC
GGTCTCGACCGAGGGCGAGATGCTCGGCGAGTGCATCGCGGTCGAGAACTTCGGCGCGGGCGACGTGATCGAGATCCGCA
AGGCCGACGGCAAGAAGTTCATGGTGCCGATGAAGACGGAAGCGGTTCCGGAATGGACCGACGAGCGGATTGTCATTGAA
GCGGCTTACGCTGACCAATGA

Upstream 100 bases:

>100_bases
CTGCTGAAGCCGCTGCTGCCGCCGCTGCCGCTCCGGCCGAAGAAGCCGCTGCCGAAGCTCCGGCCGAAGCCGCTGCCGAA
GAGCAGACGGAAGCCTGATC

Downstream 100 bases:

>100_bases
CCTTCGCCGCCACCGTACTTACTCTCTATCCCGAGATGTTTCCCGGTCCGCTGGGCGTGAGCCTTGCCGGGCGCGCGCTG
CGCGAGGGGGCGTGGGCGAT

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MRDRPVTLAAITGAHGVAGEVRLKLFGEGVAALKRYRAFNDSGDGSGLTVVKIKDDGKGGAIARFAEVPDRTAAEKLRGT
ALTVRRSELPSLPEGEYYHADLIGLPAVSTEGEMLGECIAVENFGAGDVIEIRKADGKKFMVPMKTEAVPEWTDERIVIE
AAYADQ

Sequences:

>Translated_166_residues
MRDRPVTLAAITGAHGVAGEVRLKLFGEGVAALKRYRAFNDSGDGSGLTVVKIKDDGKGGAIARFAEVPDRTAAEKLRGT
ALTVRRSELPSLPEGEYYHADLIGLPAVSTEGEMLGECIAVENFGAGDVIEIRKADGKKFMVPMKTEAVPEWTDERIVIE
AAYADQ
>Mature_166_residues
MRDRPVTLAAITGAHGVAGEVRLKLFGEGVAALKRYRAFNDSGDGSGLTVVKIKDDGKGGAIARFAEVPDRTAAEKLRGT
ALTVRRSELPSLPEGEYYHADLIGLPAVSTEGEMLGECIAVENFGAGDVIEIRKADGKKFMVPMKTEAVPEWTDERIVIE
AAYADQ

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_NOVAD (Q2G8H3)

Other databases:

- EMBL:   CP000248
- RefSeq:   YP_496684.1
- ProteinModelPortal:   Q2G8H3
- SMR:   Q2G8H3
- STRING:   Q2G8H3
- GeneID:   3916070
- GenomeReviews:   CP000248_GR
- KEGG:   nar:Saro_1406
- NMPDR:   fig|48935.1.peg.2262
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   HQDLLVV
- PhylomeDB:   Q2G8H3
- ProtClustDB:   CLSK835335
- BioCyc:   NARO279238:SARO_1406-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 17776; Mature: 17776

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDRPVTLAAITGAHGVAGEVRLKLFGEGVAALKRYRAFNDSGDGSGLTVVKIKDDGKGG
CCCCCEEEEEECCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCCCEEEEEEEECCCCC
AIARFAEVPDRTAAEKLRGTALTVRRSELPSLPEGEYYHADLIGLPAVSTEGEMLGECIA
EEEEECCCCCHHHHHHHCCEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCHHHHHEEEE
VENFGAGDVIEIRKADGKKFMVPMKTEAVPEWTDERIVIEAAYADQ
ECCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEEECCCC
>Mature Secondary Structure
MRDRPVTLAAITGAHGVAGEVRLKLFGEGVAALKRYRAFNDSGDGSGLTVVKIKDDGKGG
CCCCCEEEEEECCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCCCEEEEEEEECCCCC
AIARFAEVPDRTAAEKLRGTALTVRRSELPSLPEGEYYHADLIGLPAVSTEGEMLGECIA
EEEEECCCCCHHHHHHHCCEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCHHHHHEEEE
VENFGAGDVIEIRKADGKKFMVPMKTEAVPEWTDERIVIEAAYADQ
ECCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA