| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87199419
Identifier: 87199419
GI number: 87199419
Start: 1441218
End: 1441790
Strand: Reverse
Name: 87199419
Synonym: Saro_1398
Alternate gene names: NA
Gene position: 1441790-1441218 (Counterclockwise)
Preceding gene: 87199420
Following gene: 87199418
Centisome position: 40.48
GC content: 62.48
Gene sequence:
>573_bases ATGGCCAAGCTCTTCGGCAATCTGCATCTTGTTCTTGTGGTCGGCCTTGTCGCCGCGATCGCCGTCATGTTCGGCTATGC CGACTCCGCGGTGGTCGACACCAACTCCATCTTCCGCTGGCTGCACGTGTTCTTCGGCATCCTGTGGATCGGCCTGCTCT ACTACCTGAACTTCGTCCAGGTCCCGACCATGCCGTCGATCCCTGCCGAACAGAAGGGCGCGATCACCGGCCACATCGCG CCGAAGGTATTCTTCTTCTTCCGCTACGCCGCGCTGCTGACGGTCGTCACCGGCCTCGTCATCGCTTTCGTCTCGGGCTA TGGCCACGCGGCGATGACTTTCTCGGGCGAAGGCAACGTCAACCTCATCGGGCTCGGCATGTGGCTGGCGCTGATCATGG CGTTCAACGTGTGGTTCATCATCTGGCCCGCCCAGAAGAAGATCCTCGGCATCGTCGAAGCCTCGGCCGAGGAAAAGGCC GCTGCCGCGCCGCGCGCCCTGATCGCCAGCCGTACCAACCTGCTGCTGTCGCTGCCGATGCTCTACTGCATGGTAAGCGC GAACCTCGGCTGA
Upstream 100 bases:
>100_bases TTCGTGTGACTTTTGCATAGGCACGCTTAATATGCGCACCAACCGTGGGGGCACGGTGGTGCTCCCGCCAGCAAAACGGT TATAATTAGGGGGAAATCCG
Downstream 100 bases:
>100_bases TCCTTCGGCTGAACGTCGTCCTCAAAAAGGGGCGCGGTACCGGAAGGTGCCGCGCCCCTTTTGCTTCATGTCTGCCGAGC GACCGCGTGGCGGAACGCCC
Product: hypothetical protein
Products: NA
Alternate protein names: Membrane-Like Protein
Number of amino acids: Translated: 190; Mature: 189
Protein sequence:
>190_residues MAKLFGNLHLVLVVGLVAAIAVMFGYADSAVVDTNSIFRWLHVFFGILWIGLLYYLNFVQVPTMPSIPAEQKGAITGHIA PKVFFFFRYAALLTVVTGLVIAFVSGYGHAAMTFSGEGNVNLIGLGMWLALIMAFNVWFIIWPAQKKILGIVEASAEEKA AAAPRALIASRTNLLLSLPMLYCMVSANLG
Sequences:
>Translated_190_residues MAKLFGNLHLVLVVGLVAAIAVMFGYADSAVVDTNSIFRWLHVFFGILWIGLLYYLNFVQVPTMPSIPAEQKGAITGHIA PKVFFFFRYAALLTVVTGLVIAFVSGYGHAAMTFSGEGNVNLIGLGMWLALIMAFNVWFIIWPAQKKILGIVEASAEEKA AAAPRALIASRTNLLLSLPMLYCMVSANLG >Mature_189_residues AKLFGNLHLVLVVGLVAAIAVMFGYADSAVVDTNSIFRWLHVFFGILWIGLLYYLNFVQVPTMPSIPAEQKGAITGHIAP KVFFFFRYAALLTVVTGLVIAFVSGYGHAAMTFSGEGNVNLIGLGMWLALIMAFNVWFIIWPAQKKILGIVEASAEEKAA AAPRALIASRTNLLLSLPMLYCMVSANLG
Specific function: Unknown
COG id: COG3748
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20599; Mature: 20468
Theoretical pI: Translated: 9.41; Mature: 9.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKLFGNLHLVLVVGLVAAIAVMFGYADSAVVDTNSIFRWLHVFFGILWIGLLYYLNFVQ CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHC VPTMPSIPAEQKGAITGHIAPKVFFFFRYAALLTVVTGLVIAFVSGYGHAAMTFSGEGNV CCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCE NLIGLGMWLALIMAFNVWFIIWPAQKKILGIVEASAEEKAAAAPRALIASRTNLLLSLPM EEEEHHHHHHHHHHHHHHEEEECCHHHHHHHHHCCCHHHHHHCHHHHHHHHHHHHHHHHH LYCMVSANLG HHHHHHCCCC >Mature Secondary Structure AKLFGNLHLVLVVGLVAAIAVMFGYADSAVVDTNSIFRWLHVFFGILWIGLLYYLNFVQ CCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHC VPTMPSIPAEQKGAITGHIAPKVFFFFRYAALLTVVTGLVIAFVSGYGHAAMTFSGEGNV CCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCE NLIGLGMWLALIMAFNVWFIIWPAQKKILGIVEASAEEKAAAAPRALIASRTNLLLSLPM EEEEHHHHHHHHHHHHHHEEEECCHHHHHHHHHCCCHHHHHHCHHHHHHHHHHHHHHHHH LYCMVSANLG HHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA