| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87199235
Identifier: 87199235
GI number: 87199235
Start: 1261600
End: 1264326
Strand: Reverse
Name: 87199235
Synonym: Saro_1213
Alternate gene names: NA
Gene position: 1264326-1261600 (Counterclockwise)
Preceding gene: 87199236
Following gene: 87199234
Centisome position: 35.5
GC content: 67.77
Gene sequence:
>2727_bases ATGATCTCCGCAACCGCCATCGTGGCCCTGGCAGCAACCCTTCCGGGTAGCTCGCCAGCAGGACCGGTTGCGTCCCTGCA ACCAGCGTTCGGGGGCCAGACTGCCGATGCGCAGGCGCCCGATCTGCTGCTGCTTTCGGTCCAGCTCGATGGCGCGACCA TCTCGGAGGCGTTGACCGCCTACGGCGATCCCGCCGATCCGCTGGTGCCGCTGGGCGAACTTGCGCGTCTTCTCGAACTG CCGCTCGACATCGACGTACGGAACGGCGTGGCATCCGGCCGGATCGGGGAAAGCCAGCGACCGATCACCGTCGACCTCAA GTCTGGACAGGCGCTCATCGGCGGCAAGGTCGTGGCGCTGGTTCCGCCGGACAGCCTTGTCACCGAGACGGACATCTACC TGCGTGCCTCGCTCGTCGCAAAGCTCCTGCCGCTCAGGATCACCGCCACGCCAGAGGACATGCTTCTCACGCTCGAGGCC ACTGAAAAGCTTCCGGTTCAGGCCCAGCGCGAGCGCCTCGCGCACCTTGCGGGCCTGTCCGGCCAGCCGGAGCAGCGCGA CGATGCGATGCGGGTCGCAACGCCCTATCGCTGGCTGGGCGAACCGGCCTTCGACTTCACCGCCGAGCTTGGCCAGGCCG ATGAGGGCAGCGACGGCGGACGCCGCACGATGACCCGCTTCGAGGGGCGTGTCGCCGGGGACCTGCTGCAAGCCGGCTTC TCGGCCTGGCTGGCAACCGACGACAACGCCTCCCCGGCCGCCGCCCGCGTAGCCTTCACCAGGCGGTCGGAGGATGGGCG CCTGCTGGGATCGCTTGGCGGCACGATGGCCGCCGTGGGCGATGTATTCACCCCTGCCATGACGATGGGCGCACGCTCGC TCAATGGCGCCGGCCTGGTCTTCTCGTCGACGCGCGTGGACGAGGCGAGCGTATTCCAGCGCATCAACCTGCGCGGAGAA CTGCCCGTCGGCTACGACGCCGAACTCTACGTCAACGATATCCTGCGCTCCGGCCAGCGCGGCGCCACCGCGCAAGGCCG CTATGAATTCAACGACATACCGCTCGTACGCGGCCGCAACGCCATTCGCATCGTCCTCTATGGCCCCCGTGGCGAACGGG TCGAGCGCACGCGCGTCATAAATGTCGGCGGCGGCCAGCTCGCGGCCGGTCGCACCACCGTCGATCTCGGCGTGGTCGCG CAGGACAAACCGCTGATCGACCTGTCGGAATCGAGCATCGCAGGCTTTTCCGCCGGACGCGGCAGTCTCCGGGCGGTCCT CAACGTCGCACATGGCCTTACCGAAGCGGCAACGCTGACGGGCGGCATCTCGCGCTTTTCGGACAGCCTCGGAAAGGCCC ATACCATCGCCAGCGCGGGCCTGCGCAGTTCGGTGCTCGGCATGGCCCTGCAGGGTGACTTCGCCAGCGACTTTCGCGGG GGACGGGCCGCTTCGCTCGGCATCGCCGGTAGGGTTGGAGGCGTCAGCTTTCTTGGCCGGCACGTCGAATATGGCGGTCG CCTTGCCGACGAGGCCAACACCAGCTTCGATGCTTCACGGCCCATGCGCCGGTTCAGCGAACTTGTCTTCGACCTCGCCG TTCCGCTCCCCGGCTCCCTCGGCCTGCCAGTATCGGGCCGCATGGAGCGCGCCGAATTCGCCGACGGCGGTCGCAGCCTC ACCGCCCGCGCACGCACCACGGCCAGCCTCGGCGGCACGATCGTCGCGCTGGGCGCCGACTACAGCCATCGTTCCCAGCC CGGCGCATCCGAAACGCGGATGAGCGGCAACGTCAGCGCATCGCGCCTGATCAATTATTCCTGGCAGTTGCGCGGCACCG CCGACTTCCGCCTGAAACCCGGTTTCAGCCTCGAAACGCTGGGCTTTTCGGCCGACCACGCAATTGGCGATCGCTACAGC GTGCGCTTTGGCGCCACGCGGACCTTCTCAAGCCGCGACGTGGCCCTTCAGGCCGGCGTCACCGCACGCCTGCCTTTCGG CACCGCAACGCTTGGCGGCGACTGGTCGGCCGGACAGAACCGGTGGCGCGTAGGCCTGCAACTGAATTTCGGCCTTGCGC GCGATCCGCTCAAGGGCCGCTATCGCATTACGCCCCCCGGCCCCGCCAATGGCGCAAGCGCCGCCCTGCTCGCCTTCATC GATGCCAACGCCAACGGCCAGCGCGACAGGGGCGAGGAAGCCGTGCCGGGCGTGGTCGTCGAAGGGGGCGGACTCAAGAC GGTCACCGATGCAGACGGGCGGGCTTTCGTCACCGGGCTTGGCGATGGCAGCATGACCACCCTGCGCACCGACGCCACTG GCGCAGACACGGTCTTCGTTGCCGCGCCGCCGCAGAACATCGTCTTCGCCGCGCGGTCCGGCGGCATGACGACGATCCCG TACCCCCTCGTGCCGACATCGGAACTGGTTGCGCGCATCGGCTTTCGCCGCAAGGACGGAGAGGTGGGCGGCCTCTCCGC CGTAAAGCTGCGCCTCGTGTCGGCGAAGGGTGAAGTGATCCAGGGCATGACCGAGTTTGACGGAACAGCCGTGTTCGACC AGGTACGTCCCGGAAAATACGCGATCGAGATCGATCCGGAACAGGGCGCACGCCTCGGCATGAGGCTCAAGTCTCCGATC TTCGTGACAGTCGGCGCCGATGGCCGGACCATCGATGCCCTGGGCGAAGTGGCTTTCGACGAACCTGTCCGGATGGTGGA ACGATGA
Upstream 100 bases:
>100_bases CGTCCGCTCAAACGCGGCGAGACCGTGACCGCCACGTTCATCGCCGACGATGCGAAGCAGGCCCAGCCGGTCGCGACTGG AACCCTCACCGCCTCCTGAC
Downstream 100 bases:
>100_bases TCTGGCGCACGCTGACGATGCTGTTGCTGACCCTTGCCTTTGCCGGGGCAGCGAAAGCGCAATCCTATACCGTCTCCTCG ATCACCGGCGGGTCGCTCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 908; Mature: 908
Protein sequence:
>908_residues MISATAIVALAATLPGSSPAGPVASLQPAFGGQTADAQAPDLLLLSVQLDGATISEALTAYGDPADPLVPLGELARLLEL PLDIDVRNGVASGRIGESQRPITVDLKSGQALIGGKVVALVPPDSLVTETDIYLRASLVAKLLPLRITATPEDMLLTLEA TEKLPVQAQRERLAHLAGLSGQPEQRDDAMRVATPYRWLGEPAFDFTAELGQADEGSDGGRRTMTRFEGRVAGDLLQAGF SAWLATDDNASPAAARVAFTRRSEDGRLLGSLGGTMAAVGDVFTPAMTMGARSLNGAGLVFSSTRVDEASVFQRINLRGE LPVGYDAELYVNDILRSGQRGATAQGRYEFNDIPLVRGRNAIRIVLYGPRGERVERTRVINVGGGQLAAGRTTVDLGVVA QDKPLIDLSESSIAGFSAGRGSLRAVLNVAHGLTEAATLTGGISRFSDSLGKAHTIASAGLRSSVLGMALQGDFASDFRG GRAASLGIAGRVGGVSFLGRHVEYGGRLADEANTSFDASRPMRRFSELVFDLAVPLPGSLGLPVSGRMERAEFADGGRSL TARARTTASLGGTIVALGADYSHRSQPGASETRMSGNVSASRLINYSWQLRGTADFRLKPGFSLETLGFSADHAIGDRYS VRFGATRTFSSRDVALQAGVTARLPFGTATLGGDWSAGQNRWRVGLQLNFGLARDPLKGRYRITPPGPANGASAALLAFI DANANGQRDRGEEAVPGVVVEGGGLKTVTDADGRAFVTGLGDGSMTTLRTDATGADTVFVAAPPQNIVFAARSGGMTTIP YPLVPTSELVARIGFRRKDGEVGGLSAVKLRLVSAKGEVIQGMTEFDGTAVFDQVRPGKYAIEIDPEQGARLGMRLKSPI FVTVGADGRTIDALGEVAFDEPVRMVER
Sequences:
>Translated_908_residues MISATAIVALAATLPGSSPAGPVASLQPAFGGQTADAQAPDLLLLSVQLDGATISEALTAYGDPADPLVPLGELARLLEL PLDIDVRNGVASGRIGESQRPITVDLKSGQALIGGKVVALVPPDSLVTETDIYLRASLVAKLLPLRITATPEDMLLTLEA TEKLPVQAQRERLAHLAGLSGQPEQRDDAMRVATPYRWLGEPAFDFTAELGQADEGSDGGRRTMTRFEGRVAGDLLQAGF SAWLATDDNASPAAARVAFTRRSEDGRLLGSLGGTMAAVGDVFTPAMTMGARSLNGAGLVFSSTRVDEASVFQRINLRGE LPVGYDAELYVNDILRSGQRGATAQGRYEFNDIPLVRGRNAIRIVLYGPRGERVERTRVINVGGGQLAAGRTTVDLGVVA QDKPLIDLSESSIAGFSAGRGSLRAVLNVAHGLTEAATLTGGISRFSDSLGKAHTIASAGLRSSVLGMALQGDFASDFRG GRAASLGIAGRVGGVSFLGRHVEYGGRLADEANTSFDASRPMRRFSELVFDLAVPLPGSLGLPVSGRMERAEFADGGRSL TARARTTASLGGTIVALGADYSHRSQPGASETRMSGNVSASRLINYSWQLRGTADFRLKPGFSLETLGFSADHAIGDRYS VRFGATRTFSSRDVALQAGVTARLPFGTATLGGDWSAGQNRWRVGLQLNFGLARDPLKGRYRITPPGPANGASAALLAFI DANANGQRDRGEEAVPGVVVEGGGLKTVTDADGRAFVTGLGDGSMTTLRTDATGADTVFVAAPPQNIVFAARSGGMTTIP YPLVPTSELVARIGFRRKDGEVGGLSAVKLRLVSAKGEVIQGMTEFDGTAVFDQVRPGKYAIEIDPEQGARLGMRLKSPI FVTVGADGRTIDALGEVAFDEPVRMVER >Mature_908_residues MISATAIVALAATLPGSSPAGPVASLQPAFGGQTADAQAPDLLLLSVQLDGATISEALTAYGDPADPLVPLGELARLLEL PLDIDVRNGVASGRIGESQRPITVDLKSGQALIGGKVVALVPPDSLVTETDIYLRASLVAKLLPLRITATPEDMLLTLEA TEKLPVQAQRERLAHLAGLSGQPEQRDDAMRVATPYRWLGEPAFDFTAELGQADEGSDGGRRTMTRFEGRVAGDLLQAGF SAWLATDDNASPAAARVAFTRRSEDGRLLGSLGGTMAAVGDVFTPAMTMGARSLNGAGLVFSSTRVDEASVFQRINLRGE LPVGYDAELYVNDILRSGQRGATAQGRYEFNDIPLVRGRNAIRIVLYGPRGERVERTRVINVGGGQLAAGRTTVDLGVVA QDKPLIDLSESSIAGFSAGRGSLRAVLNVAHGLTEAATLTGGISRFSDSLGKAHTIASAGLRSSVLGMALQGDFASDFRG GRAASLGIAGRVGGVSFLGRHVEYGGRLADEANTSFDASRPMRRFSELVFDLAVPLPGSLGLPVSGRMERAEFADGGRSL TARARTTASLGGTIVALGADYSHRSQPGASETRMSGNVSASRLINYSWQLRGTADFRLKPGFSLETLGFSADHAIGDRYS VRFGATRTFSSRDVALQAGVTARLPFGTATLGGDWSAGQNRWRVGLQLNFGLARDPLKGRYRITPPGPANGASAALLAFI DANANGQRDRGEEAVPGVVVEGGGLKTVTDADGRAFVTGLGDGSMTTLRTDATGADTVFVAAPPQNIVFAARSGGMTTIP YPLVPTSELVARIGFRRKDGEVGGLSAVKLRLVSAKGEVIQGMTEFDGTAVFDQVRPGKYAIEIDPEQGARLGMRLKSPI FVTVGADGRTIDALGEVAFDEPVRMVER
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 95101; Mature: 95101
Theoretical pI: Translated: 6.57; Mature: 6.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MISATAIVALAATLPGSSPAGPVASLQPAFGGQTADAQAPDLLLLSVQLDGATISEALTA CCCHHEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHH YGDPADPLVPLGELARLLELPLDIDVRNGVASGRIGESQRPITVDLKSGQALIGGKVVAL CCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCEEEEECCCCEEECCEEEEE VPPDSLVTETDIYLRASLVAKLLPLRITATPEDMLLTLEATEKLPVQAQRERLAHLAGLS ECCCCCEECCHHHHHHHHHHHHHCEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHCCC GQPEQRDDAMRVATPYRWLGEPAFDFTAELGQADEGSDGGRRTMTRFEGRVAGDLLQAGF CCCCCCCCCEEEECCHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHHHCCHHHHHHHHHCH SAWLATDDNASPAAARVAFTRRSEDGRLLGSLGGTMAAVGDVFTPAMTMGARSLNGAGLV HEEEECCCCCCCCCEEEEEEEECCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEEE FSSTRVDEASVFQRINLRGELPVGYDAELYVNDILRSGQRGATAQGRYEFNDIPLVRGRN EECCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEECCCCCEEECCC AIRIVLYGPRGERVERTRVINVGGGQLAAGRTTVDLGVVAQDKPLIDLSESSIAGFSAGR EEEEEEECCCCCCEEEEEEEECCCCEEECCCEEEEEEEEECCCCCEEECCCCCCCCCCCC GSLRAVLNVAHGLTEAATLTGGISRFSDSLGKAHTIASAGLRSSVLGMALQGDFASDFRG HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHEEECCCCHHHCCC GRAASLGIAGRVGGVSFLGRHVEYGGRLADEANTSFDASRPMRRFSELVFDLAVPLPGSL CCEEEEECCCCCCCHHHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC GLPVSGRMERAEFADGGRSLTARARTTASLGGTIVALGADYSHRSQPGASETRMSGNVSA CCCCCCCCCHHHHCCCCCEEEEHHHHHHCCCCEEEEEECCCCCCCCCCCCHHCCCCCCCH SRLINYSWQLRGTADFRLKPGFSLETLGFSADHAIGDRYSVRFGATRTFSSRDVALQAGV HHEEEEEEEEECCCCEEECCCCCEEECCCCCCCCCCCCEEEEECCEEECCCCCEEEECCC TARLPFGTATLGGDWSAGQNRWRVGLQLNFGLARDPLKGRYRITPPGPANGASAALLAFI EEECCCCCEECCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEECCCCCCCCCCEEEEEEE DANANGQRDRGEEAVPGVVVEGGGLKTVTDADGRAFVTGLGDGSMTTLRTDATGADTVFV ECCCCCCCCCCCCCCCCEEEECCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCCEEEE AAPPQNIVFAARSGGMTTIPYPLVPTSELVARIGFRRKDGEVGGLSAVKLRLVSAKGEVI ECCCCCEEEEECCCCCEECCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCHHH QGMTEFDGTAVFDQVRPGKYAIEIDPEQGARLGMRLKSPIFVTVGADGRTIDALGEVAFD HCHHHCCCEEEECCCCCCCEEEEECCCCCCEECEEECCCEEEEECCCCCCHHHHHHHHHC EPVRMVER CHHHHHCC >Mature Secondary Structure MISATAIVALAATLPGSSPAGPVASLQPAFGGQTADAQAPDLLLLSVQLDGATISEALTA CCCHHEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHH YGDPADPLVPLGELARLLELPLDIDVRNGVASGRIGESQRPITVDLKSGQALIGGKVVAL CCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCEEEEECCCCEEECCEEEEE VPPDSLVTETDIYLRASLVAKLLPLRITATPEDMLLTLEATEKLPVQAQRERLAHLAGLS ECCCCCEECCHHHHHHHHHHHHHCEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHCCC GQPEQRDDAMRVATPYRWLGEPAFDFTAELGQADEGSDGGRRTMTRFEGRVAGDLLQAGF CCCCCCCCCEEEECCHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHHHCCHHHHHHHHHCH SAWLATDDNASPAAARVAFTRRSEDGRLLGSLGGTMAAVGDVFTPAMTMGARSLNGAGLV HEEEECCCCCCCCCEEEEEEEECCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEEE FSSTRVDEASVFQRINLRGELPVGYDAELYVNDILRSGQRGATAQGRYEFNDIPLVRGRN EECCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEECCCCCEEECCC AIRIVLYGPRGERVERTRVINVGGGQLAAGRTTVDLGVVAQDKPLIDLSESSIAGFSAGR EEEEEEECCCCCCEEEEEEEECCCCEEECCCEEEEEEEEECCCCCEEECCCCCCCCCCCC GSLRAVLNVAHGLTEAATLTGGISRFSDSLGKAHTIASAGLRSSVLGMALQGDFASDFRG HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHEEECCCCHHHCCC GRAASLGIAGRVGGVSFLGRHVEYGGRLADEANTSFDASRPMRRFSELVFDLAVPLPGSL CCEEEEECCCCCCCHHHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC GLPVSGRMERAEFADGGRSLTARARTTASLGGTIVALGADYSHRSQPGASETRMSGNVSA CCCCCCCCCHHHHCCCCCEEEEHHHHHHCCCCEEEEEECCCCCCCCCCCCHHCCCCCCCH SRLINYSWQLRGTADFRLKPGFSLETLGFSADHAIGDRYSVRFGATRTFSSRDVALQAGV HHEEEEEEEEECCCCEEECCCCCEEECCCCCCCCCCCCEEEEECCEEECCCCCEEEECCC TARLPFGTATLGGDWSAGQNRWRVGLQLNFGLARDPLKGRYRITPPGPANGASAALLAFI EEECCCCCEECCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEECCCCCCCCCCEEEEEEE DANANGQRDRGEEAVPGVVVEGGGLKTVTDADGRAFVTGLGDGSMTTLRTDATGADTVFV ECCCCCCCCCCCCCCCCEEEECCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCCEEEE AAPPQNIVFAARSGGMTTIPYPLVPTSELVARIGFRRKDGEVGGLSAVKLRLVSAKGEVI ECCCCCEEEEECCCCCEECCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCHHH QGMTEFDGTAVFDQVRPGKYAIEIDPEQGARLGMRLKSPIFVTVGADGRTIDALGEVAFD HCHHHCCCEEEECCCCCCCEEEEECCCCCCEECEEECCCEEEEECCCCCCHHHHHHHHHC EPVRMVER CHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA