| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87199212
Identifier: 87199212
GI number: 87199212
Start: 1233486
End: 1234793
Strand: Direct
Name: 87199212
Synonym: Saro_1190
Alternate gene names: NA
Gene position: 1233486-1234793 (Clockwise)
Preceding gene: 87199211
Following gene: 87199213
Centisome position: 34.63
GC content: 68.73
Gene sequence:
>1308_bases ATGGCTGTGCCCGCTGCCGAAAGGCCGCAGGCTCCTGCCGTCGAAGCCGGGGACGCCCGAAAGTCTGTCCAACTCACGCC CGCCCAGCTCTTCCTTTTTGCCGATGCCGCGCGCGATGCCGGCGATTTTGCCGCTGCCGAATCCGCCTATCGCGCGCTCG CCGCGAACCCGGATATCGACCTGCGCACCGAAGCGCGCTTCCGCCTCGGCCTGATGCTGGCCGATGGCATGGGTCGCCCG CGCGACGCTGCCATCGAATTTCGCCGCATCCTCGATGAAAAGCCCGATGCCGCGCGCGTCCGGCTCGAACTTGCCCGCAT GGACGCCATGCTTGGCCGCCTCGGCGCGGCAGAGCGCGAATTTCGCGCCGCGCAGGCCACTGGCCAGCTCCCCCCGGATG TAGAGCGCGCGGTGCGCTTCTATGCTTCTGCTTTGGCTGCCGCCAAGCCGTTCGGCGGCAGCATCGAACTTGCCCTCGCG CCCGACAGCAACATCAACCGCGCTACCCGTTCGGATACGCTCGGCACCGTCATCGGCGATTTCACGCTCAGCGACGATGC CAAGGCGAAATCCGGCATCGGCCTTGCGGCGCGCGCGCAGGCCTATGCCCGGCTTCCGCTCGGCCAGAAGGCCCGGCTTC TCGCGCGTGTTTCCGGCAGCGGCGATTTCTACCGCACCCGCGCATTCGACGATTATGCCCTCGCGCTCCAGGCCGGGCCG GAATTCGTCTCGGGCGCGGATCGCTTCACCCTTTCGGCCGGTCCCTCATGGCGCTGGTACGGCCGCGTGCCGTTCACGCG CGGGTGGGGCGGCTCGGCGGCATTTCAGCACCCTCTCGGCAAGCGCACGCAGCTTCGCACGGAAGCCGCGCTGTCGCGGC TCGACAACCTGCGCAACGATCCCCAGGACGCCACCGTCTACGCCGGAACGATCGGCCTCGACCGCGCCTTTGCCGCCAAT TTCGGCGGAGGCCTGCAACTGCGCGCCAGCCGCACCGCCGCGCGCGAGCCCGGCTGGTCCGACTGGACCGGCGGCACCTC CGCCTATCTCTTCCGCGAGATCGGACGCACCACGCTGGTCCTCGATGCCAGCTATGCCCGTCTTGTCGCCGACGACCGGC TGCTGCTCTACCCGCGAAAGCGCGTGGACGACCGCTACGGCGTCGGCTTCGGCGCGACCTTCCGCAGCATCCAGTGGAAG GGCCTGGCGCCCTTCGTCCGCGCCCGGTTCGAACGCAACCTGTCCACCGTCGAACTTTACGATTTCAACCGCCGTGCAGC CGAACTGGGGGTCACGTCGGCATTCTGA
Upstream 100 bases:
>100_bases GTCGACGAAATGCGAAGGTAATCAGACTTGCGCTGTCATCGATGTTCATTAACAATCATCCATTGTGGTGCAGTCAATTG TTACGATGATCGGGGTGGCA
Downstream 100 bases:
>100_bases GAGGAGAAGGGGCATGTCTCGATTCACACGTTTTGCGTCCGGCGCGGCCGCCACGATGCTGCTCGCGTCGTGCGGTGGCG GCGGTGGTGGCGGCAGCGTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 435; Mature: 434
Protein sequence:
>435_residues MAVPAAERPQAPAVEAGDARKSVQLTPAQLFLFADAARDAGDFAAAESAYRALAANPDIDLRTEARFRLGLMLADGMGRP RDAAIEFRRILDEKPDAARVRLELARMDAMLGRLGAAEREFRAAQATGQLPPDVERAVRFYASALAAAKPFGGSIELALA PDSNINRATRSDTLGTVIGDFTLSDDAKAKSGIGLAARAQAYARLPLGQKARLLARVSGSGDFYRTRAFDDYALALQAGP EFVSGADRFTLSAGPSWRWYGRVPFTRGWGGSAAFQHPLGKRTQLRTEAALSRLDNLRNDPQDATVYAGTIGLDRAFAAN FGGGLQLRASRTAAREPGWSDWTGGTSAYLFREIGRTTLVLDASYARLVADDRLLLYPRKRVDDRYGVGFGATFRSIQWK GLAPFVRARFERNLSTVELYDFNRRAAELGVTSAF
Sequences:
>Translated_435_residues MAVPAAERPQAPAVEAGDARKSVQLTPAQLFLFADAARDAGDFAAAESAYRALAANPDIDLRTEARFRLGLMLADGMGRP RDAAIEFRRILDEKPDAARVRLELARMDAMLGRLGAAEREFRAAQATGQLPPDVERAVRFYASALAAAKPFGGSIELALA PDSNINRATRSDTLGTVIGDFTLSDDAKAKSGIGLAARAQAYARLPLGQKARLLARVSGSGDFYRTRAFDDYALALQAGP EFVSGADRFTLSAGPSWRWYGRVPFTRGWGGSAAFQHPLGKRTQLRTEAALSRLDNLRNDPQDATVYAGTIGLDRAFAAN FGGGLQLRASRTAAREPGWSDWTGGTSAYLFREIGRTTLVLDASYARLVADDRLLLYPRKRVDDRYGVGFGATFRSIQWK GLAPFVRARFERNLSTVELYDFNRRAAELGVTSAF >Mature_434_residues AVPAAERPQAPAVEAGDARKSVQLTPAQLFLFADAARDAGDFAAAESAYRALAANPDIDLRTEARFRLGLMLADGMGRPR DAAIEFRRILDEKPDAARVRLELARMDAMLGRLGAAEREFRAAQATGQLPPDVERAVRFYASALAAAKPFGGSIELALAP DSNINRATRSDTLGTVIGDFTLSDDAKAKSGIGLAARAQAYARLPLGQKARLLARVSGSGDFYRTRAFDDYALALQAGPE FVSGADRFTLSAGPSWRWYGRVPFTRGWGGSAAFQHPLGKRTQLRTEAALSRLDNLRNDPQDATVYAGTIGLDRAFAANF GGGLQLRASRTAAREPGWSDWTGGTSAYLFREIGRTTLVLDASYARLVADDRLLLYPRKRVDDRYGVGFGATFRSIQWKG LAPFVRARFERNLSTVELYDFNRRAAELGVTSAF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47253; Mature: 47122
Theoretical pI: Translated: 10.32; Mature: 10.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVPAAERPQAPAVEAGDARKSVQLTPAQLFLFADAARDAGDFAAAESAYRALAANPDID CCCCCCCCCCCCCCCCCCCCCEEEECHHHEEEEECCCCCCCHHHHHHHHHHHHHCCCCCC LRTEARFRLGLMLADGMGRPRDAAIEFRRILDEKPDAARVRLELARMDAMLGRLGAAERE EECCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHH FRAAQATGQLPPDVERAVRFYASALAAAKPFGGSIELALAPDSNINRATRSDTLGTVIGD HHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHCCCCHHHEEEC FTLSDDAKAKSGIGLAARAQAYARLPLGQKARLLARVSGSGDFYRTRAFDDYALALQAGP EEECCCCCHHCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCC EFVSGADRFTLSAGPSWRWYGRVPFTRGWGGSAAFQHPLGKRTQLRTEAALSRLDNLRND HHHCCCCEEEEECCCCEEEEECCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCC PQDATVYAGTIGLDRAFAANFGGGLQLRASRTAAREPGWSDWTGGTSAYLFREIGRTTLV CCCCEEEEEECCCCHHHHHCCCCCEEEEECCHHCCCCCCCCCCCCCHHHHHHHCCCEEEE LDASYARLVADDRLLLYPRKRVDDRYGVGFGATFRSIQWKGLAPFVRARFERNLSTVELY EECCHHHHHCCCEEEECCHHHCCCCCCCCCCCHHHEEEECCCCHHHHHHHHCCCCEEEEE DFNRRAAELGVTSAF ECCCHHHHCCCCCCC >Mature Secondary Structure AVPAAERPQAPAVEAGDARKSVQLTPAQLFLFADAARDAGDFAAAESAYRALAANPDID CCCCCCCCCCCCCCCCCCCCEEEECHHHEEEEECCCCCCCHHHHHHHHHHHHHCCCCCC LRTEARFRLGLMLADGMGRPRDAAIEFRRILDEKPDAARVRLELARMDAMLGRLGAAERE EECCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHH FRAAQATGQLPPDVERAVRFYASALAAAKPFGGSIELALAPDSNINRATRSDTLGTVIGD HHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHCCCCHHHEEEC FTLSDDAKAKSGIGLAARAQAYARLPLGQKARLLARVSGSGDFYRTRAFDDYALALQAGP EEECCCCCHHCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCC EFVSGADRFTLSAGPSWRWYGRVPFTRGWGGSAAFQHPLGKRTQLRTEAALSRLDNLRND HHHCCCCEEEEECCCCEEEEECCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCC PQDATVYAGTIGLDRAFAANFGGGLQLRASRTAAREPGWSDWTGGTSAYLFREIGRTTLV CCCCEEEEEECCCCHHHHHCCCCCEEEEECCHHCCCCCCCCCCCCCHHHHHHHCCCEEEE LDASYARLVADDRLLLYPRKRVDDRYGVGFGATFRSIQWKGLAPFVRARFERNLSTVELY EECCHHHHHCCCEEEECCHHHCCCCCCCCCCCHHHEEEECCCCHHHHHHHHCCCCEEEEE DFNRRAAELGVTSAF ECCCHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA