Click here to switch to the map view.

The map label for this gene is yvrB [H]

Identifier: 87199210

GI number: 87199210

Start: 1231395

End: 1232357

Strand: Direct

Name: yvrB [H]

Synonym: Saro_1188

Alternate gene names: 87199210

Gene position: 1231395-1232357 (Clockwise)

Preceding gene: 87199209

Following gene: 87199211

Centisome position: 34.57

GC content: 70.82

Gene sequence:

>963_bases
TTGAATCGCCTGATCGCCATCCTCCTCGCCGCCCTTGCGATCGCCCTGCCGCTCTCGCTGCTCGCCGGGCAGGTATGGAT
CGATCCCTTCGGTCCGCCGGTCCCCAACGCCACCGCGATCCTGATGGAACTGCGCCTTCCGCGCGCCATTCTCGCGCTCG
TTCTTGGTGCCGGACTCGGCGCTGCGGGCGCGGCGATGCAGGGTTACTTGCGCAATCCGCTCGCCGACCCGGGCCTGTTC
GGCATAGCGCCCGCCGCCGCGCTCGGCGCGGTCCTGTCCTTCTACACCGGCTACGAGGTGCAGGCCTTTACCCTCCCGCT
TTTCGCGCTGGCCGGAGGCGCCGGCGCCATGGCGCTGCTCGCGCTCATCGCCGGGCGTAGCGGAGGCATCGCGCTGTTCA
CGCTGGCGGGCATGATGATCGCCAGCCTGGCCGGCGCGCTCACCAGCCTCGCCATAAGCCTCTCGCCCAATCCCTTCGCC
CTGTCGGAAATCGTGACCTGGCTCATGGGCGCGCTGGCCGATCGTGGCTGGCACGAGGTGCGCCTCGCGGCTCCACTGAC
CCTCGCCGGCCTCGCGATCCTCTGGCGCGCAGCCCCCGGCCTCGATGCGCTGGCGCTGGGCGAACCCGCCGCCCGCTCGC
TCGGGGTCGATCCGGCGCGGCTGCTCTGGCTGATGATCGCGGGCGTCGGCCTTGTCGTCGGCAGCGGTGTCGCGGTCGCG
GGGATGATCGGCTTTGTCGGCCTCATGGTCCCCCATTTCGTGCGCCCCTTCACCGACCAGCGCCCCTCGGCAACACTCGT
GCCCTCTGCGCTTGCCGGCGCGCTGCTCCTGCTGGTGGCGGATTGCCTCTGCCGCATCCTGCCGCTTGCCGGTGGCGAAC
TGCGCCTGGGTATCGCGCTGAGCATCGCGGGCGCTCCGTTCTTCCTGCGGCTTCTGCTGCGCATGCGACGGGATCTGGCC
TGA

Upstream 100 bases:

>100_bases
CCGCCGCCCGGAGGCTGGCCGAGGTGCGTACGCAGATCGTTCCCGATAAGGGGAGTGGAACCACCCCGGGCGTGTTCCGG
GATGGTGGAGGTGTCTCGCG

Downstream 100 bases:

>100_bases
TGCTCGAAGTTGCAGGCCTGACCGTTCCCCATCGCCTTCGCGATGTCAGCGCACGGTTCCCGTCCGGGCGCGTTACCGCG
ATCTGCGGGCCGAATGGCGC

Product: transport system permease

Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MNRLIAILLAALAIALPLSLLAGQVWIDPFGPPVPNATAILMELRLPRAILALVLGAGLGAAGAAMQGYLRNPLADPGLF
GIAPAAALGAVLSFYTGYEVQAFTLPLFALAGGAGAMALLALIAGRSGGIALFTLAGMMIASLAGALTSLAISLSPNPFA
LSEIVTWLMGALADRGWHEVRLAAPLTLAGLAILWRAAPGLDALALGEPAARSLGVDPARLLWLMIAGVGLVVGSGVAVA
GMIGFVGLMVPHFVRPFTDQRPSATLVPSALAGALLLLVADCLCRILPLAGGELRLGIALSIAGAPFFLRLLLRMRRDLA

Sequences:

>Translated_320_residues
MNRLIAILLAALAIALPLSLLAGQVWIDPFGPPVPNATAILMELRLPRAILALVLGAGLGAAGAAMQGYLRNPLADPGLF
GIAPAAALGAVLSFYTGYEVQAFTLPLFALAGGAGAMALLALIAGRSGGIALFTLAGMMIASLAGALTSLAISLSPNPFA
LSEIVTWLMGALADRGWHEVRLAAPLTLAGLAILWRAAPGLDALALGEPAARSLGVDPARLLWLMIAGVGLVVGSGVAVA
GMIGFVGLMVPHFVRPFTDQRPSATLVPSALAGALLLLVADCLCRILPLAGGELRLGIALSIAGAPFFLRLLLRMRRDLA
>Mature_320_residues
MNRLIAILLAALAIALPLSLLAGQVWIDPFGPPVPNATAILMELRLPRAILALVLGAGLGAAGAAMQGYLRNPLADPGLF
GIAPAAALGAVLSFYTGYEVQAFTLPLFALAGGAGAMALLALIAGRSGGIALFTLAGMMIASLAGALTSLAISLSPNPFA
LSEIVTWLMGALADRGWHEVRLAAPLTLAGLAILWRAAPGLDALALGEPAARSLGVDPARLLWLMIAGVGLVVGSGVAVA
GMIGFVGLMVPHFVRPFTDQRPSATLVPSALAGALLLLVADCLCRILPLAGGELRLGIALSIAGAPFFLRLLLRMRRDLA

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0609

COG function: function code P; ABC-type Fe3+-siderophore transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790740, Length=280, Percent_Identity=40.7142857142857, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1788004, Length=299, Percent_Identity=33.4448160535117, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1790741, Length=290, Percent_Identity=33.7931034482759, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI1786805, Length=310, Percent_Identity=33.8709677419355, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1786347, Length=283, Percent_Identity=32.1554770318021, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1786804, Length=247, Percent_Identity=29.9595141700405, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000522 [H]

Pfam domain/function: PF01032 FecCD [H]

EC number: NA

Molecular weight: Translated: 32591; Mature: 32591

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRLIAILLAALAIALPLSLLAGQVWIDPFGPPVPNATAILMELRLPRAILALVLGAGLG
CHHHHHHHHHHHHHHHHHHHHHCHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
AAGAAMQGYLRNPLADPGLFGIAPAAALGAVLSFYTGYEVQAFTLPLFALAGGAGAMALL
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHH
ALIAGRSGGIALFTLAGMMIASLAGALTSLAISLSPNPFALSEIVTWLMGALADRGWHEV
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHCCCCHHE
RLAAPLTLAGLAILWRAAPGLDALALGEPAARSLGVDPARLLWLMIAGVGLVVGSGVAVA
EEECHHHHHHHHHHHHCCCCCCCHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHH
GMIGFVGLMVPHFVRPFTDQRPSATLVPSALAGALLLLVADCLCRILPLAGGELRLGIAL
HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
SIAGAPFFLRLLLRMRRDLA
EECCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNRLIAILLAALAIALPLSLLAGQVWIDPFGPPVPNATAILMELRLPRAILALVLGAGLG
CHHHHHHHHHHHHHHHHHHHHHCHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
AAGAAMQGYLRNPLADPGLFGIAPAAALGAVLSFYTGYEVQAFTLPLFALAGGAGAMALL
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHH
ALIAGRSGGIALFTLAGMMIASLAGALTSLAISLSPNPFALSEIVTWLMGALADRGWHEV
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHCCCCHHE
RLAAPLTLAGLAILWRAAPGLDALALGEPAARSLGVDPARLLWLMIAGVGLVVGSGVAVA
EEECHHHHHHHHHHHHCCCCCCCHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHH
GMIGFVGLMVPHFVRPFTDQRPSATLVPSALAGALLLLVADCLCRILPLAGGELRLGIAL
HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
SIAGAPFFLRLLLRMRRDLA
EECCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]

Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]