| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87198986
Identifier: 87198986
GI number: 87198986
Start: 1010832
End: 1011239
Strand: Reverse
Name: 87198986
Synonym: Saro_0964
Alternate gene names: NA
Gene position: 1011239-1010832 (Counterclockwise)
Preceding gene: 87198987
Following gene: 87198981
Centisome position: 28.39
GC content: 64.95
Gene sequence:
>408_bases ATGCCCCTCAACATGACCAAGGTTGCCTACGGCGCCCAGTCGCTCGCCGAAATCCACGAATGGTTCTCGGATTCGGGTCG TCGCGGCGGCGCCAAGGTCGCGCGTCTCACCACGCGCAACCGGCCCAAGCGCGCCGAGGAGATGATCGGCGGCTCGCTCT ACTGGATTCACAAGCACCAGCTCGTGGCCCGGTCCGAGATCGTCGCTTTCGAGGAAGCCGAAAACGGCTACACCAACATC GTCGTCAGCACGAAACTGATAGACGTCCACCCCAAGCCCCGCCGCGCCCACCAGGGCTGGCGCTACCTCGAAGAGGCAGA TGCCCCAGCCGACCTCGCCGATGGCGAGGCTGGTGAAGTGCTGCCCGCGCAGATCGCCTCGGAACTGGCAAAGCTCGGGC TGGTCTAA
Upstream 100 bases:
>100_bases CTTCGGCCGTATTCGTGACCATGGCGACCGATGTCATGGGCTTCTTCTCGTTCCTCGGCCTCGCCGTGCTGAGCGGTCTG GCCTAGTTCGGAAGAAGATC
Downstream 100 bases:
>100_bases CGCTTAAGCCCTAGGCGAACCCCGCCGCCTCGCGCGCCACGACCTTGCGGATCAGGTCGACATAGACCTGCGGCTCCTGG GCACCGGGCACGATCAGCTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 135; Mature: 134
Protein sequence:
>135_residues MPLNMTKVAYGAQSLAEIHEWFSDSGRRGGAKVARLTTRNRPKRAEEMIGGSLYWIHKHQLVARSEIVAFEEAENGYTNI VVSTKLIDVHPKPRRAHQGWRYLEEADAPADLADGEAGEVLPAQIASELAKLGLV
Sequences:
>Translated_135_residues MPLNMTKVAYGAQSLAEIHEWFSDSGRRGGAKVARLTTRNRPKRAEEMIGGSLYWIHKHQLVARSEIVAFEEAENGYTNI VVSTKLIDVHPKPRRAHQGWRYLEEADAPADLADGEAGEVLPAQIASELAKLGLV >Mature_134_residues PLNMTKVAYGAQSLAEIHEWFSDSGRRGGAKVARLTTRNRPKRAEEMIGGSLYWIHKHQLVARSEIVAFEEAENGYTNIV VSTKLIDVHPKPRRAHQGWRYLEEADAPADLADGEAGEVLPAQIASELAKLGLV
Specific function: Unknown
COG id: COG5458
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14932; Mature: 14801
Theoretical pI: Translated: 7.09; Mature: 7.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLNMTKVAYGAQSLAEIHEWFSDSGRRGGAKVARLTTRNRPKRAEEMIGGSLYWIHKHQ CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHCCCCCHHHHHHHCCCEEEEEHHH LVARSEIVAFEEAENGYTNIVVSTKLIDVHPKPRRAHQGWRYLEEADAPADLADGEAGEV HHHHHHHHEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC LPAQIASELAKLGLV CHHHHHHHHHHHCCC >Mature Secondary Structure PLNMTKVAYGAQSLAEIHEWFSDSGRRGGAKVARLTTRNRPKRAEEMIGGSLYWIHKHQ CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHCCCCCHHHHHHHCCCEEEEEHHH LVARSEIVAFEEAENGYTNIVVSTKLIDVHPKPRRAHQGWRYLEEADAPADLADGEAGEV HHHHHHHHEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC LPAQIASELAKLGLV CHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA