| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87198980
Identifier: 87198980
GI number: 87198980
Start: 1005560
End: 1006276
Strand: Reverse
Name: 87198980
Synonym: Saro_0958
Alternate gene names: NA
Gene position: 1006276-1005560 (Counterclockwise)
Preceding gene: 87198981
Following gene: 87198978
Centisome position: 28.25
GC content: 65.69
Gene sequence:
>717_bases ATGATTGGCAAAAGCATAAGGGCAATCGCGGGCACCATGATCGCGGCGGGCGCAGCCGTGCTTCTCATGGGCGCCGGCAA GCCCGCAAAGCCCGCCCCCCGCGCGAACTGGGTGGCCTCCTCTACCGTGACGGCCGATGGTCACCACCTGCTCGGCAATC CCGCGGCAAAACTGCGCCTCGTCGAATTCGTCAGCTACACCTGCCCGCATTGCTCGCACTTCGAGATCGAATCCGAAGGG CAGCTCAAGATCGGCATGGTCCAGCCGGGCAAGGGCGCGATCGAGGTGCGCAACTTCGTGCGCGATCCGATCGACATGAC CGTGGCGCTCATCACCAACTGCGTGCCGCCCAGCCGCTTCTTCACCCTGCACACCGCCTTCATGCGCAGCCAGGCCCAGT GGATCGGCCCGCTCGCCAACTCGACCGAGGCGCAACGCCAGCGCTGGTTCAACGGCACCTTCGCCACCCGCACCCGCGCC ATCGCCAGCGATTTCAGGTTCTACGACTTCATGGCCGCGCGGGGCATGGACCGCTCGACGCTCGACCGCTGCCTTTCGAA CGAAGCTCTCGCCAAGAAGCTCGCGGCCGAAACCGACGAGGCGATCAACCAGTACAACGTATCGGGCACGCCCAGCTTCA TGATCGACGGCATCCTCCTCGCCGGCACCCACGACTGGGCCTCCCTCCGCCCCCAGATCCTCGCTCGCCTCAACTGA
Upstream 100 bases:
>100_bases TCGGGGATTCGCTGCGCGATATCGGTGACCCGGAACTGCGCACGGTACTGGAATCGCTGGCGCGCAGCCTCGACATCGCA GCCAAGGGGGACAAGGTCGG
Downstream 100 bases:
>100_bases CCCCTGCGCCGGCGCCGGCCTGCTTCGACAAATTGAGCGTCAGCAGGGAATGCTGCCGCTCCGCGATGCGTGGACAGGCG CCGTCGTGACCGACCGTCCG
Product: protein-disulfide isomerase
Products: NA
Alternate protein names: DSBA Oxidoreductase; Protein-Disulfide Isomerase-Like Protein; Dsba OxidoreductaseTat Pathway Signal; ThiolDisulfide Interchange Protein DsbA Family; DsbA Family ThiolDisulfide Interchange Protein; Periplasmic Thiol-Disulphide Interchange Protein; Twin-Arginine Translocation Pathway Signal Protein; DsbA Oxidoreductase; Thiol-Disulfide Oxidoreductase Protein; Thiol-Disulfide Oxidoreductase D
Number of amino acids: Translated: 238; Mature: 238
Protein sequence:
>238_residues MIGKSIRAIAGTMIAAGAAVLLMGAGKPAKPAPRANWVASSTVTADGHHLLGNPAAKLRLVEFVSYTCPHCSHFEIESEG QLKIGMVQPGKGAIEVRNFVRDPIDMTVALITNCVPPSRFFTLHTAFMRSQAQWIGPLANSTEAQRQRWFNGTFATRTRA IASDFRFYDFMAARGMDRSTLDRCLSNEALAKKLAAETDEAINQYNVSGTPSFMIDGILLAGTHDWASLRPQILARLN
Sequences:
>Translated_238_residues MIGKSIRAIAGTMIAAGAAVLLMGAGKPAKPAPRANWVASSTVTADGHHLLGNPAAKLRLVEFVSYTCPHCSHFEIESEG QLKIGMVQPGKGAIEVRNFVRDPIDMTVALITNCVPPSRFFTLHTAFMRSQAQWIGPLANSTEAQRQRWFNGTFATRTRA IASDFRFYDFMAARGMDRSTLDRCLSNEALAKKLAAETDEAINQYNVSGTPSFMIDGILLAGTHDWASLRPQILARLN >Mature_238_residues MIGKSIRAIAGTMIAAGAAVLLMGAGKPAKPAPRANWVASSTVTADGHHLLGNPAAKLRLVEFVSYTCPHCSHFEIESEG QLKIGMVQPGKGAIEVRNFVRDPIDMTVALITNCVPPSRFFTLHTAFMRSQAQWIGPLANSTEAQRQRWFNGTFATRTRA IASDFRFYDFMAARGMDRSTLDRCLSNEALAKKLAAETDEAINQYNVSGTPSFMIDGILLAGTHDWASLRPQILARLN
Specific function: Unknown
COG id: COG1651
COG function: function code O; Protein-disulfide isomerase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25937; Mature: 25937
Theoretical pI: Translated: 9.65; Mature: 9.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIGKSIRAIAGTMIAAGAAVLLMGAGKPAKPAPRANWVASSTVTADGHHLLGNPAAKLRL CCCCHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCEECCEEECCCCEECCCCHHHHHH VEFVSYTCPHCSHFEIESEGQLKIGMVQPGKGAIEVRNFVRDPIDMTVALITNCVPPSRF HHHHHHCCCCCCCEEECCCCCEEEEEECCCCCHHHHHHHHHCHHHHHHHHHHHCCCCHHH FTLHTAFMRSQAQWIGPLANSTEAQRQRWFNGTFATRTRAIASDFRFYDFMAARGMDRST HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHH LDRCLSNEALAKKLAAETDEAINQYNVSGTPSFMIDGILLAGTHDWASLRPQILARLN HHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCEEEECCCCHHHHCHHHHHCCC >Mature Secondary Structure MIGKSIRAIAGTMIAAGAAVLLMGAGKPAKPAPRANWVASSTVTADGHHLLGNPAAKLRL CCCCHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCEECCEEECCCCEECCCCHHHHHH VEFVSYTCPHCSHFEIESEGQLKIGMVQPGKGAIEVRNFVRDPIDMTVALITNCVPPSRF HHHHHHCCCCCCCEEECCCCCEEEEEECCCCCHHHHHHHHHCHHHHHHHHHHHCCCCHHH FTLHTAFMRSQAQWIGPLANSTEAQRQRWFNGTFATRTRAIASDFRFYDFMAARGMDRST HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHH LDRCLSNEALAKKLAAETDEAINQYNVSGTPSFMIDGILLAGTHDWASLRPQILARLN HHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCEEEECCCCHHHHCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA