| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87198656
Identifier: 87198656
GI number: 87198656
Start: 674523
End: 675179
Strand: Reverse
Name: 87198656
Synonym: Saro_0632
Alternate gene names: NA
Gene position: 675179-674523 (Counterclockwise)
Preceding gene: 87198657
Following gene: 87198655
Centisome position: 18.96
GC content: 54.95
Gene sequence:
>657_bases TTGAAGATCTACCCGGTAGGACTCGCAGGCGAAGTAAACTACCAAGAAGGCATTCTCCGATCTCATCCTGGTGAAGCTGT CCGTGTATACCACGAACGCGACAATCCTTACGACAGTCGAGCTTTACGGGTTGAAAACAATGTTGGCGATGTCATCGGCT ACATTCCGAGATCCTCCTGGCTGCAACGAGCAGTCCACGAAGATGGATTAGGTATTGCTGCCACGATCAAGGCCATATCT GACGGGGACGGACACGGTGTTTTCGGCGTCGTCCTCGACGTCACATTGACGGATGATCCGATTTTCATTCGAGAGTTTTC TTCTAGCCCCAGAAAAAGGGGGAAGAGTGACGCCAAGAGTCGCGCCATCGAGCCAACCGGAGACGAACGCGCACTCGCGT TGGCGACTGGGCTGATTGCAATGGCTACCGTGCCACTGAACTGTGATTGTGGGAGGTCATACAGCCACAACTACAAGGGA TTACGGGACGACAGCGTATTGAAATGTCCGTCCTGCGACACGCTAGCGGACGTGTCCGAGGCAGTCCTATTTCGCTTGGA CGCCGAGCTTCATGCACTGCTGCTACAAATGCTCGCTCACGAAGGCCTTCCACCCGTCGACGCCGATACCGTGAGGGCTT TGCGCTTGGGCGCCTAA
Upstream 100 bases:
>100_bases GTTTCACTCTCAGATCACTGAACGCTCCGGACATGGAGAATGAGGAAGTGGTTTGGGCCGCGCCGGTATTGTGGGTCAGA CAGCGACCAGCGAGGGCAAT
Downstream 100 bases:
>100_bases CAAGACGGTGTGCTATTGCACACTTTATGGATTGACGAGGTGTGCATTGTCACACTAGTTTGCCTCCCGCAACACCACGG GAGGCACCAATGCTTCGCAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 218; Mature: 218
Protein sequence:
>218_residues MKIYPVGLAGEVNYQEGILRSHPGEAVRVYHERDNPYDSRALRVENNVGDVIGYIPRSSWLQRAVHEDGLGIAATIKAIS DGDGHGVFGVVLDVTLTDDPIFIREFSSSPRKRGKSDAKSRAIEPTGDERALALATGLIAMATVPLNCDCGRSYSHNYKG LRDDSVLKCPSCDTLADVSEAVLFRLDAELHALLLQMLAHEGLPPVDADTVRALRLGA
Sequences:
>Translated_218_residues MKIYPVGLAGEVNYQEGILRSHPGEAVRVYHERDNPYDSRALRVENNVGDVIGYIPRSSWLQRAVHEDGLGIAATIKAIS DGDGHGVFGVVLDVTLTDDPIFIREFSSSPRKRGKSDAKSRAIEPTGDERALALATGLIAMATVPLNCDCGRSYSHNYKG LRDDSVLKCPSCDTLADVSEAVLFRLDAELHALLLQMLAHEGLPPVDADTVRALRLGA >Mature_218_residues MKIYPVGLAGEVNYQEGILRSHPGEAVRVYHERDNPYDSRALRVENNVGDVIGYIPRSSWLQRAVHEDGLGIAATIKAIS DGDGHGVFGVVLDVTLTDDPIFIREFSSSPRKRGKSDAKSRAIEPTGDERALALATGLIAMATVPLNCDCGRSYSHNYKG LRDDSVLKCPSCDTLADVSEAVLFRLDAELHALLLQMLAHEGLPPVDADTVRALRLGA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23635; Mature: 23635
Theoretical pI: Translated: 5.59; Mature: 5.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIYPVGLAGEVNYQEGILRSHPGEAVRVYHERDNPYDSRALRVENNVGDVIGYIPRSSW CEEEEECCCCCCCHHHCHHHCCCCCEEEEEECCCCCCCCCEEEEECCCCHHHECCCCHHH LQRAVHEDGLGIAATIKAISDGDGHGVFGVVLDVTLTDDPIFIREFSSSPRKRGKSDAKS HHHHHHHCCCCEEEEEEEECCCCCCEEEEEEEEEEECCCCEEEEECCCCHHHCCCCHHHH RAIEPTGDERALALATGLIAMATVPLNCDCGRSYSHNYKGLRDDSVLKCPSCDTLADVSE CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHH AVLFRLDAELHALLLQMLAHEGLPPVDADTVRALRLGA HHHHHHCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC >Mature Secondary Structure MKIYPVGLAGEVNYQEGILRSHPGEAVRVYHERDNPYDSRALRVENNVGDVIGYIPRSSW CEEEEECCCCCCCHHHCHHHCCCCCEEEEEECCCCCCCCCEEEEECCCCHHHECCCCHHH LQRAVHEDGLGIAATIKAISDGDGHGVFGVVLDVTLTDDPIFIREFSSSPRKRGKSDAKS HHHHHHHCCCCEEEEEEEECCCCCCEEEEEEEEEEECCCCEEEEECCCCHHHCCCCHHHH RAIEPTGDERALALATGLIAMATVPLNCDCGRSYSHNYKGLRDDSVLKCPSCDTLADVSE CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHH AVLFRLDAELHALLLQMLAHEGLPPVDADTVRALRLGA HHHHHHCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA