| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is 87198549
Identifier: 87198549
GI number: 87198549
Start: 567941
End: 568564
Strand: Reverse
Name: 87198549
Synonym: Saro_0525
Alternate gene names: NA
Gene position: 568564-567941 (Counterclockwise)
Preceding gene: 87198553
Following gene: 87198548
Centisome position: 15.96
GC content: 57.69
Gene sequence:
>624_bases ATGCGGAAGATTTTGCCGAAAAAGGGCAGGAGGTTGCCGATGTGGAAAGGTGCGCTGACCGGGCGAGTGGCCTATGCCGA AACCATCGCGGAGCTACTCTGGCGCGAACATGGCCGTGACCGTGGCGCGGTGAAGCAGATCATGAAGACGACCGGCGCAA GCGAGCGAACAGTTAAGCACTGGATGTCCGCCCAGCACGGTCCCGAAACGGTTTTCTTCCTCCGCCTCCTGACAAGCTCA TCAGTGATGAAGGCCTTTGTTCTGGACCTGATCCAAATTTCGCAACTCGCAGCCATCGCGCCTCAGCTTACCGATTATCC CGCGAGGGGCCCGTCGATGCTACTCCCATCGCGGGAACCGCGACACGAGAAGCCACCGGATGACCGTACAAATGTCCCAA TAAGCGTCCCTGCAAGCGACCCAATAATCGATGGTTTGAACTACAGGCAGCGCTGGTTTCTTGACCGAGTCGGCTCAGGC TACCCGTGCCGTGCATACGACCTTTCGACCCATTGGCAGGTCAGCCTCAAGACCGCGCGAAGGGATATTGCGGCACTGTG TTCGGCAGGAAAGATCCGGTATGTTGGTGCGCGAAAAAACGGCAAGTATGATCCTGTCGGTTGA
Upstream 100 bases:
>100_bases TTTCGATCACCGTACCGCCGAAAGCAGGCGATCAACTTGAACAGCGCAAACGACGGACCTCTCCGCGCTCCCGCGCAGTC ATCGAGTATATGGGTAAAAG
Downstream 100 bases:
>100_bases CCGCCACGGCGCGGCTGTTGCCGCCGCGCCACCAGCACGATGTCCCGCCCCGATTCCGCCAACACAGCAGCAATCGCGCT GCCGATGCATCCCGCTCCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 207; Mature: 207
Protein sequence:
>207_residues MRKILPKKGRRLPMWKGALTGRVAYAETIAELLWREHGRDRGAVKQIMKTTGASERTVKHWMSAQHGPETVFFLRLLTSS SVMKAFVLDLIQISQLAAIAPQLTDYPARGPSMLLPSREPRHEKPPDDRTNVPISVPASDPIIDGLNYRQRWFLDRVGSG YPCRAYDLSTHWQVSLKTARRDIAALCSAGKIRYVGARKNGKYDPVG
Sequences:
>Translated_207_residues MRKILPKKGRRLPMWKGALTGRVAYAETIAELLWREHGRDRGAVKQIMKTTGASERTVKHWMSAQHGPETVFFLRLLTSS SVMKAFVLDLIQISQLAAIAPQLTDYPARGPSMLLPSREPRHEKPPDDRTNVPISVPASDPIIDGLNYRQRWFLDRVGSG YPCRAYDLSTHWQVSLKTARRDIAALCSAGKIRYVGARKNGKYDPVG >Mature_207_residues MRKILPKKGRRLPMWKGALTGRVAYAETIAELLWREHGRDRGAVKQIMKTTGASERTVKHWMSAQHGPETVFFLRLLTSS SVMKAFVLDLIQISQLAAIAPQLTDYPARGPSMLLPSREPRHEKPPDDRTNVPISVPASDPIIDGLNYRQRWFLDRVGSG YPCRAYDLSTHWQVSLKTARRDIAALCSAGKIRYVGARKNGKYDPVG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23293; Mature: 23293
Theoretical pI: Translated: 10.83; Mature: 10.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKILPKKGRRLPMWKGALTGRVAYAETIAELLWREHGRDRGAVKQIMKTTGASERTVKH CCCCCCCCCCCCCCHHCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHH WMSAQHGPETVFFLRLLTSSSVMKAFVLDLIQISQLAAIAPQLTDYPARGPSMLLPSREP HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC RHEKPPDDRTNVPISVPASDPIIDGLNYRQRWFLDRVGSGYPCRAYDLSTHWQVSLKTAR CCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCEEEHHHHHH RDIAALCSAGKIRYVGARKNGKYDPVG HHHHHHHCCCCEEEEECCCCCCCCCCC >Mature Secondary Structure MRKILPKKGRRLPMWKGALTGRVAYAETIAELLWREHGRDRGAVKQIMKTTGASERTVKH CCCCCCCCCCCCCCHHCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHH WMSAQHGPETVFFLRLLTSSSVMKAFVLDLIQISQLAAIAPQLTDYPARGPSMLLPSREP HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC RHEKPPDDRTNVPISVPASDPIIDGLNYRQRWFLDRVGSGYPCRAYDLSTHWQVSLKTAR CCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCEEEHHHHHH RDIAALCSAGKIRYVGARKNGKYDPVG HHHHHHHCCCCEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA