| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is 87198233
Identifier: 87198233
GI number: 87198233
Start: 213651
End: 214397
Strand: Direct
Name: 87198233
Synonym: Saro_0208
Alternate gene names: NA
Gene position: 213651-214397 (Clockwise)
Preceding gene: 87198232
Following gene: 87198234
Centisome position: 6.0
GC content: 69.08
Gene sequence:
>747_bases ATGAACGGGGCCATGTCCGACGTCTCGCGCTTCACCCTGCCTTCGGGTCTCGCCATGGCCTATCGTCACCTTCCCGGGCG CCTGCCGGCGGTGGTGTTCCTCCCCGGCTACATGTCCGACATGGCCGGCGGCAAGGCGCAGGCGGTGCTGGAATGGGCGC GGGAGCGCGGGCGGGCCTGCCTGCTGCTCGACTATACCGGATGCGGGCAGAGCGAGGGCCGTTTTGCCGATGGCACGCTC TCCAGATGGCGCGACGAGGTCGTGGCGCTGATCGATCATCTGGGAATCGCATCCGTCCAGCTCGTCGGCTCCAGCATGGG CGGCTGGCTCATGCTGCTCGTCGCGGAAGCTCTGGGAGAGCGGTGCCGGGCTCTTGTCGGGATCGCCCCCGCGCCGGACT TCACCGAATGGGGCCTGTCGCAGTCGCAGCGGATCGAGCTTGCGGCAGGGCGCACCGTCTACGAAGACAATCCCTACGGC CCCGAGCCGACCCCGACCCACGCCCTGTTCTGGTCCGATGGCGAGCGGCACAAGAGGCTCGGGCACGAGATCGCGTTCGA CGGGCCGGTGCGCCTGCTCCACGGGCAGCATGATGCCGACGTGCCGTGGGACATCTCGCTCCGCCTTGCCGCCGCGCTGC GTTCAGCCGACGTGCAGGTGCATCTGGTCAAGGACGGCGATCACCGGCTCTCGCGCGAGGGCGACATTGCCTTGCTCCTG CGCGAACTGGCCGGGCTCGATGCCTGA
Upstream 100 bases:
>100_bases CCCCCTCGCCTTTCGCATCGCCGACCTGTTCGGCCTCGCCATCGAGGAGATCTTCGAGCGCGACTGATCGATGTGCTTGC GGGCCGGGATGCGGCGCGCC
Downstream 100 bases:
>100_bases TACGCCTGAGGAAAGCCCCCGCATGATCGACCTTCCCGCGCCCATGTTCGCGATCGAAATGGCGCAGGATGCCGCGCTCA TGCAGGTAGGACCCAGCCCG
Product: alpha/beta hydrolase
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 248; Mature: 248
Protein sequence:
>248_residues MNGAMSDVSRFTLPSGLAMAYRHLPGRLPAVVFLPGYMSDMAGGKAQAVLEWARERGRACLLLDYTGCGQSEGRFADGTL SRWRDEVVALIDHLGIASVQLVGSSMGGWLMLLVAEALGERCRALVGIAPAPDFTEWGLSQSQRIELAAGRTVYEDNPYG PEPTPTHALFWSDGERHKRLGHEIAFDGPVRLLHGQHDADVPWDISLRLAAALRSADVQVHLVKDGDHRLSREGDIALLL RELAGLDA
Sequences:
>Translated_248_residues MNGAMSDVSRFTLPSGLAMAYRHLPGRLPAVVFLPGYMSDMAGGKAQAVLEWARERGRACLLLDYTGCGQSEGRFADGTL SRWRDEVVALIDHLGIASVQLVGSSMGGWLMLLVAEALGERCRALVGIAPAPDFTEWGLSQSQRIELAAGRTVYEDNPYG PEPTPTHALFWSDGERHKRLGHEIAFDGPVRLLHGQHDADVPWDISLRLAAALRSADVQVHLVKDGDHRLSREGDIALLL RELAGLDA >Mature_248_residues MNGAMSDVSRFTLPSGLAMAYRHLPGRLPAVVFLPGYMSDMAGGKAQAVLEWARERGRACLLLDYTGCGQSEGRFADGTL SRWRDEVVALIDHLGIASVQLVGSSMGGWLMLLVAEALGERCRALVGIAPAPDFTEWGLSQSQRIELAAGRTVYEDNPYG PEPTPTHALFWSDGERHKRLGHEIAFDGPVRLLHGQHDADVPWDISLRLAAALRSADVQVHLVKDGDHRLSREGDIALLL RELAGLDA
Specific function: Unknown
COG id: COG0596
COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI8923001, Length=252, Percent_Identity=36.5079365079365, Blast_Score=157, Evalue=6e-39,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26972; Mature: 26972
Theoretical pI: Translated: 5.80; Mature: 5.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNGAMSDVSRFTLPSGLAMAYRHLPGRLPAVVFLPGYMSDMAGGKAQAVLEWARERGRAC CCCCHHHHHHHCCCCHHHHHHHHCCCCCCEEEEECCHHHHHCCCHHHHHHHHHHHHCCEE LLLDYTGCGQSEGRFADGTLSRWRDEVVALIDHLGIASVQLVGSSMGGWLMLLVAEALGE EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHEEECCCCCCHHHHHHHHHHHHH RCRALVGIAPAPDFTEWGLSQSQRIELAAGRTVYEDNPYGPEPTPTHALFWSDGERHKRL HHHHHCCCCCCCCHHHHCCCCCCEEEEECCCEEECCCCCCCCCCCCEEEEECCCHHHHHC GHEIAFDGPVRLLHGQHDADVPWDISLRLAAALRSADVQVHLVKDGDHRLSREGDIALLL CCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHH RELAGLDA HHHHCCCC >Mature Secondary Structure MNGAMSDVSRFTLPSGLAMAYRHLPGRLPAVVFLPGYMSDMAGGKAQAVLEWARERGRAC CCCCHHHHHHHCCCCHHHHHHHHCCCCCCEEEEECCHHHHHCCCHHHHHHHHHHHHCCEE LLLDYTGCGQSEGRFADGTLSRWRDEVVALIDHLGIASVQLVGSSMGGWLMLLVAEALGE EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHEEECCCCCCHHHHHHHHHHHHH RCRALVGIAPAPDFTEWGLSQSQRIELAAGRTVYEDNPYGPEPTPTHALFWSDGERHKRL HHHHHCCCCCCCCHHHHCCCCCCEEEEECCCEEECCCCCCCCCCCCEEEEECCCHHHHHC GHEIAFDGPVRLLHGQHDADVPWDISLRLAAALRSADVQVHLVKDGDHRLSREGDIALLL CCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHH RELAGLDA HHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA