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The map label for this gene is dcd

Identifier: 87198172

GI number: 87198172

Start: 147206

End: 147760

Strand: Direct

Name: dcd

Synonym: Saro_0146

Alternate gene names: 87198172

Gene position: 147206-147760 (Clockwise)

Preceding gene: 87198171

Following gene: 87198173

Centisome position: 4.13

GC content: 60.72

Gene sequence:

>555_bases
TTGGCCATTCTTTCCGACAAGTGGATCCGCGACAAGGCGCTGAACGAGGGCATGATCGAGCCTTTCGTCGAGAACCAGCG
GCGCGACGGGTGCATCAGCTATGGTTTGTCGTCGTATGGCTACGATGCGCGCGTGGCACCCGAGTTCAAGATTTTCACCA
ATGTGGATTCGGCGGTCGTCGACCCCAAGGATTTTGCGTCGAACTCGTTCGTGGACCGCGAAACCGATGTCTGCGTAATC
CCGCCCAATTCCTTCGCGTTGGCCCGGACCGTCGAATACTTCCGGGTACCGCGCGACGTGCTGGTTATCTGCCTTGGCAA
GAGCACCTACGCGCGCTGCGGGATCATCGTCAACGTGACCCCGCTCGAGCCGGGCTGGGAAGGCCACGTCACGCTCGAGT
TTTCCAATACCACGCCCCTGCCCGCCAAGATCTATGCCAATGAAGGCGCGTGCCAGTTCCTGTTCCTGCAGGGCAACGAA
CCTTGCGAGGTCAGCTATGCCGATCGTGCGGGCAAGTACATGGGCCAGCGCGGGGTGACGCTGCCGAGGTTGTAG

Upstream 100 bases:

>100_bases
GCGGCTGTCTGCGCTCTTGCCCAATGCCTTCGGTCCGGCCAATCTGGCGTGAAGGTTCAGGGGTAGGCATTCCTGCACGA
CGTTTCTCAGGGAGAGCCAG

Downstream 100 bases:

>100_bases
GCGTGGGCCCTTGCGGGCTTTTCCTGCGGCTGAGGCGCTGGCGCTTCACGCTTAACCCCGCACTTAAATCCGGTTGCAAT
CGCCACTGATTCGGCCAAGC

Product: deoxycytidine triphosphate deaminase

Products: NA

Alternate protein names: dCTP deaminase

Number of amino acids: Translated: 184; Mature: 183

Protein sequence:

>184_residues
MAILSDKWIRDKALNEGMIEPFVENQRRDGCISYGLSSYGYDARVAPEFKIFTNVDSAVVDPKDFASNSFVDRETDVCVI
PPNSFALARTVEYFRVPRDVLVICLGKSTYARCGIIVNVTPLEPGWEGHVTLEFSNTTPLPAKIYANEGACQFLFLQGNE
PCEVSYADRAGKYMGQRGVTLPRL

Sequences:

>Translated_184_residues
MAILSDKWIRDKALNEGMIEPFVENQRRDGCISYGLSSYGYDARVAPEFKIFTNVDSAVVDPKDFASNSFVDRETDVCVI
PPNSFALARTVEYFRVPRDVLVICLGKSTYARCGIIVNVTPLEPGWEGHVTLEFSNTTPLPAKIYANEGACQFLFLQGNE
PCEVSYADRAGKYMGQRGVTLPRL
>Mature_183_residues
AILSDKWIRDKALNEGMIEPFVENQRRDGCISYGLSSYGYDARVAPEFKIFTNVDSAVVDPKDFASNSFVDRETDVCVIP
PNSFALARTVEYFRVPRDVLVICLGKSTYARCGIIVNVTPLEPGWEGHVTLEFSNTTPLPAKIYANEGACQFLFLQGNEP
CEVSYADRAGKYMGQRGVTLPRL

Specific function: De novo synthesis of thymidylate. [C]

COG id: COG0717

COG function: function code F; Deoxycytidine deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dCTP deaminase family

Homologues:

Organism=Escherichia coli, GI1788379, Length=159, Percent_Identity=32.0754716981132, Blast_Score=66, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DCD_NOVAD (Q2GC28)

Other databases:

- EMBL:   CP000248
- RefSeq:   YP_495429.1
- ProteinModelPortal:   Q2GC28
- SMR:   Q2GC28
- STRING:   Q2GC28
- GeneID:   3918120
- GenomeReviews:   CP000248_GR
- KEGG:   nar:Saro_0146
- NMPDR:   fig|48935.1.peg.3620
- eggNOG:   COG0717
- HOGENOM:   HBG553199
- OMA:   MEYFRIP
- PhylomeDB:   Q2GC28
- ProtClustDB:   PRK00416
- BioCyc:   NARO279238:SARO_0146-MONOMER
- HAMAP:   MF_00146
- InterPro:   IPR011962
- InterPro:   IPR008180
- TIGRFAMs:   TIGR02274

Pfam domain/function: PF00692 dUTPase

EC number: =3.5.4.13

Molecular weight: Translated: 20502; Mature: 20370

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAILSDKWIRDKALNEGMIEPFVENQRRDGCISYGLSSYGYDARVAPEFKIFTNVDSAVV
CCCCCCCHHHHHHCCCCCCCHHHHCCCCCCCEECCCCCCCCCCEECCCEEEEECCCCCEE
DPKDFASNSFVDRETDVCVIPPNSFALARTVEYFRVPRDVLVICLGKSTYARCGIIVNVT
CCHHHCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCHHEEEEECCCCCCEEEEEEEEE
PLEPGWEGHVTLEFSNTTPLPAKIYANEGACQFLFLQGNEPCEVSYADRAGKYMGQRGVT
ECCCCCCCEEEEEECCCCCCCEEEEECCCCEEEEEEECCCCCEEEEHHHHHHHHCCCCCC
LPRL
CCCC
>Mature Secondary Structure 
AILSDKWIRDKALNEGMIEPFVENQRRDGCISYGLSSYGYDARVAPEFKIFTNVDSAVV
CCCCCCHHHHHHCCCCCCCHHHHCCCCCCCEECCCCCCCCCCEECCCEEEEECCCCCEE
DPKDFASNSFVDRETDVCVIPPNSFALARTVEYFRVPRDVLVICLGKSTYARCGIIVNVT
CCHHHCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCHHEEEEECCCCCCEEEEEEEEE
PLEPGWEGHVTLEFSNTTPLPAKIYANEGACQFLFLQGNEPCEVSYADRAGKYMGQRGVT
ECCCCCCCEEEEEECCCCCCCEEEEECCCCEEEEEEECCCCCEEEEHHHHHHHHCCCCCC
LPRL
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA