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The map label for this gene is ycdK [C]

Identifier: 86751648

GI number: 86751648

Start: 5144947

End: 5145333

Strand: Direct

Name: ycdK [C]

Synonym: RPB_4550

Alternate gene names: 86751648

Gene position: 5144947-5145333 (Clockwise)

Preceding gene: 86751647

Following gene: 86751649

Centisome position: 96.5

GC content: 67.44

Gene sequence:

>387_bases
ATGCCGCGCCGCCTGATTTCCACCGGATCGCCGTTCGAGAAGACCGCCGGCTACAGCCGCGCCGTGGTCGACGGCGATTT
CGTGTTCGTCTCCGGCACCACCGGGTTCGACTACGCGACGATGACGCTGCCCGAGGACGTCACGGCGCAGACCCGCAATT
GCTTCAAGACCATCGCCAAGGCGCTCGCCGACGCCGGCTTCGAGATGGCCGACATCGTGCGCGCGACCTACTACATCACC
GACGCCGCCGACGCCGACGCGGTGTTCGCGGTCTGCGGCGAGAACCTCGCTGACATCCGCCCCGCCGCGACGCTGCTGGT
GGTCGCCGGGCTGTACAAGCCCGAGATGAAGGTCGAGATCGAAGTCACCGCCAAGCGCCGCAGCTAA

Upstream 100 bases:

>100_bases
CGGCCCTGATTTGCTCGGCCTTGATTTGCTCGGCCTTGATTTGCAGAACCAGACGCGGCATGGGCTGCGCACCCTCCCCT
TCAGTTCCAGGAATGACCCG

Downstream 100 bases:

>100_bases
ACCCTGCTACTTTCACAACAATCGGCTCTCCGTTGACTTTGCGGCGGGGAGCCCCCAGTTTCTGAACCATGACGAAATTG
CCCCGCAACCGTTTGACGCT

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 127

Protein sequence:

>128_residues
MPRRLISTGSPFEKTAGYSRAVVDGDFVFVSGTTGFDYATMTLPEDVTAQTRNCFKTIAKALADAGFEMADIVRATYYIT
DAADADAVFAVCGENLADIRPAATLLVVAGLYKPEMKVEIEVTAKRRS

Sequences:

>Translated_128_residues
MPRRLISTGSPFEKTAGYSRAVVDGDFVFVSGTTGFDYATMTLPEDVTAQTRNCFKTIAKALADAGFEMADIVRATYYIT
DAADADAVFAVCGENLADIRPAATLLVVAGLYKPEMKVEIEVTAKRRS
>Mature_127_residues
PRRLISTGSPFEKTAGYSRAVVDGDFVFVSGTTGFDYATMTLPEDVTAQTRNCFKTIAKALADAGFEMADIVRATYYITD
AADADAVFAVCGENLADIRPAATLLVVAGLYKPEMKVEIEVTAKRRS

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13799; Mature: 13668

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: PS00599 AA_TRANSFER_CLASS_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRRLISTGSPFEKTAGYSRAVVDGDFVFVSGTTGFDYATMTLPEDVTAQTRNCFKTIAK
CCCCCCCCCCCHHHHCCCCEEEECCCEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHH
ALADAGFEMADIVRATYYITDAADADAVFAVCGENLADIRPAATLLVVAGLYKPEMKVEI
HHHHCCCHHHHHHHHHEEEECCCCCCCEEEHHCCCCHHCCHHHHHHHHHHCCCCCEEEEE
EVTAKRRS
EEEEECCC
>Mature Secondary Structure 
PRRLISTGSPFEKTAGYSRAVVDGDFVFVSGTTGFDYATMTLPEDVTAQTRNCFKTIAK
CCCCCCCCCCHHHHCCCCEEEECCCEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHH
ALADAGFEMADIVRATYYITDAADADAVFAVCGENLADIRPAATLLVVAGLYKPEMKVEI
HHHHCCCHHHHHHHHHEEEECCCCCCCEEEHHCCCCHHCCHHHHHHHHHHCCCCCEEEEE
EVTAKRRS
EEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12000953; 2199329 [H]