| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is fabG [H]
Identifier: 86751626
GI number: 86751626
Start: 5117385
End: 5118161
Strand: Direct
Name: fabG [H]
Synonym: RPB_4528
Alternate gene names: 86751626
Gene position: 5117385-5118161 (Clockwise)
Preceding gene: 86751624
Following gene: 86751630
Centisome position: 95.98
GC content: 70.4
Gene sequence:
>777_bases ATGAGCTACAAACCCCTCAGCCGTTCCGTCGAAGGCCTGCGCGTGCTGATCACGGGTGCTGCGAGCGGCATGGGCCGCGC CACCGCGCATGTGTTCGCCGACGAAGGCGCGCGCGTCGCCGTCACCGACGTGACGCGCGACGCCGCGCAGCCGGTGGCCG AGGCGATCCAAGCGCGCGGCGGCGACGCGACCGCGTTCGCGCTCGATGTCGGCGACGCCGCCGCGATCAAGGCCGGCGTC GACGCGATCGCGCAGGCGCTCGGCGGGCTCGACATCGTCATCAACAATGCCGGCATTTCAGTGCGACTGCCGATCGACGA CGACGGCTACGACGCCGGCTGGGACCGCGCGCTCGCGGTGATGCTGAGCGCACATCCGCGCGTGATCCGCGCCGCGCTGC CCTATCTGCGCAAGTCGTCTTCGCCGCGGATCGTCAACATCGCCTCCACCGAAGCGCTCGGCGCCACCGCCGGCCACAGC GCCTATTCGGCCGCGAAGGCCGGCGTCACCGGTCTCACGCGCTCGCTCGCGGTCGAGCTCGGCCCCGAAGGCATCACCGT CAATTGCATCTGCCCGGGTCCGATCACCACCGCGATGACCGACCGCATCAGCGACGACCACAAGCAGAAATACGCCCGCC GCCGCACCGCGCTGCACCGCTACGGCGCCCCGGAAGAAGTCGCCCACATGACGCTGAGCCTGTGCCTCCCCGCCGCGTCG TTCCTCACCGGCGTGGTGATTCCGGTCGACGGGGGATTGATGGCGAGGAATGCGTGA
Upstream 100 bases:
>100_bases GTTTGACCTGTGTCCCAATCGATGCGAGCCTTGTCAATCGGAGCCGGACCGCGACGCGCGTCCGCGCAATTCCGCAACAA GAAACAACCGGAGGAAACCG
Downstream 100 bases:
>100_bases GGGCGACGATCCACTGGTGCGCGGCTTCCTTTCCCTCCCCCTTGTGGGGAGGGTGGACGGCCCGATGCTAATCGGGCCGG ACGGGTGGGGGTGGCAACGC
Product: Short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]
Number of amino acids: Translated: 258; Mature: 257
Protein sequence:
>258_residues MSYKPLSRSVEGLRVLITGAASGMGRATAHVFADEGARVAVTDVTRDAAQPVAEAIQARGGDATAFALDVGDAAAIKAGV DAIAQALGGLDIVINNAGISVRLPIDDDGYDAGWDRALAVMLSAHPRVIRAALPYLRKSSSPRIVNIASTEALGATAGHS AYSAAKAGVTGLTRSLAVELGPEGITVNCICPGPITTAMTDRISDDHKQKYARRRTALHRYGAPEEVAHMTLSLCLPAAS FLTGVVIPVDGGLMARNA
Sequences:
>Translated_258_residues MSYKPLSRSVEGLRVLITGAASGMGRATAHVFADEGARVAVTDVTRDAAQPVAEAIQARGGDATAFALDVGDAAAIKAGV DAIAQALGGLDIVINNAGISVRLPIDDDGYDAGWDRALAVMLSAHPRVIRAALPYLRKSSSPRIVNIASTEALGATAGHS AYSAAKAGVTGLTRSLAVELGPEGITVNCICPGPITTAMTDRISDDHKQKYARRRTALHRYGAPEEVAHMTLSLCLPAAS FLTGVVIPVDGGLMARNA >Mature_257_residues SYKPLSRSVEGLRVLITGAASGMGRATAHVFADEGARVAVTDVTRDAAQPVAEAIQARGGDATAFALDVGDAAAIKAGVD AIAQALGGLDIVINNAGISVRLPIDDDGYDAGWDRALAVMLSAHPRVIRAALPYLRKSSSPRIVNIASTEALGATAGHSA YSAAKAGVTGLTRSLAVELGPEGITVNCICPGPITTAMTDRISDDHKQKYARRRTALHRYGAPEEVAHMTLSLCLPAASF LTGVVIPVDGGLMARNA
Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=242, Percent_Identity=29.7520661157025, Blast_Score=117, Evalue=9e-27, Organism=Homo sapiens, GI40254992, Length=242, Percent_Identity=31.404958677686, Blast_Score=107, Evalue=1e-23, Organism=Homo sapiens, GI15277342, Length=253, Percent_Identity=33.201581027668, Blast_Score=101, Evalue=6e-22, Organism=Homo sapiens, GI66933014, Length=251, Percent_Identity=29.8804780876494, Blast_Score=98, Evalue=6e-21, Organism=Homo sapiens, GI4504505, Length=239, Percent_Identity=33.4728033472803, Blast_Score=98, Evalue=6e-21, Organism=Homo sapiens, GI7705925, Length=247, Percent_Identity=31.9838056680162, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI5031737, Length=237, Percent_Identity=27.8481012658228, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI126723750, Length=259, Percent_Identity=28.957528957529, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI19923817, Length=252, Percent_Identity=27.7777777777778, Blast_Score=92, Evalue=3e-19, Organism=Homo sapiens, GI31542939, Length=206, Percent_Identity=30.0970873786408, Blast_Score=91, Evalue=9e-19, Organism=Homo sapiens, GI4758504, Length=258, Percent_Identity=29.8449612403101, Blast_Score=89, Evalue=6e-18, Organism=Homo sapiens, GI10190704, Length=240, Percent_Identity=30.8333333333333, Blast_Score=88, Evalue=6e-18, Organism=Homo sapiens, GI59889578, Length=226, Percent_Identity=30.5309734513274, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI142976729, Length=198, Percent_Identity=26.7676767676768, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI210032110, Length=204, Percent_Identity=28.4313725490196, Blast_Score=82, Evalue=3e-16, Organism=Homo sapiens, GI40254986, Length=205, Percent_Identity=32.6829268292683, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI40807363, Length=200, Percent_Identity=29.5, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI33667109, Length=182, Percent_Identity=28.021978021978, Blast_Score=78, Evalue=6e-15, Organism=Homo sapiens, GI83715985, Length=258, Percent_Identity=28.2945736434109, Blast_Score=78, Evalue=6e-15, Organism=Homo sapiens, GI126723191, Length=186, Percent_Identity=27.9569892473118, Blast_Score=78, Evalue=8e-15, Organism=Homo sapiens, GI20149619, Length=227, Percent_Identity=29.9559471365639, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI25282469, Length=229, Percent_Identity=26.6375545851528, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI224922801, Length=173, Percent_Identity=29.4797687861272, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI4503301, Length=260, Percent_Identity=27.3076923076923, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI223718074, Length=241, Percent_Identity=28.2157676348548, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI7657478, Length=199, Percent_Identity=26.1306532663317, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI7706318, Length=192, Percent_Identity=25, Blast_Score=68, Evalue=9e-12, Organism=Escherichia coli, GI1787335, Length=245, Percent_Identity=34.2857142857143, Blast_Score=129, Evalue=3e-31, Organism=Escherichia coli, GI1790717, Length=247, Percent_Identity=30.7692307692308, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1787905, Length=244, Percent_Identity=34.0163934426229, Blast_Score=115, Evalue=3e-27, Organism=Escherichia coli, GI87082100, Length=249, Percent_Identity=33.7349397590361, Blast_Score=110, Evalue=7e-26, Organism=Escherichia coli, GI1788459, Length=244, Percent_Identity=30.7377049180328, Blast_Score=108, Evalue=3e-25, Organism=Escherichia coli, GI1789378, Length=244, Percent_Identity=32.7868852459016, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI87082160, Length=250, Percent_Identity=28.8, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI2367175, Length=242, Percent_Identity=31.8181818181818, Blast_Score=95, Evalue=4e-21, Organism=Escherichia coli, GI1789057, Length=256, Percent_Identity=32.03125, Blast_Score=94, Evalue=9e-21, Organism=Escherichia coli, GI2367365, Length=248, Percent_Identity=32.258064516129, Blast_Score=91, Evalue=8e-20, Organism=Escherichia coli, GI1789208, Length=250, Percent_Identity=26.8, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1786812, Length=251, Percent_Identity=30.2788844621514, Blast_Score=88, Evalue=5e-19, Organism=Escherichia coli, GI1787820, Length=182, Percent_Identity=27.4725274725275, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1786701, Length=196, Percent_Identity=29.0816326530612, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI71994600, Length=247, Percent_Identity=34.8178137651822, Blast_Score=119, Evalue=2e-27, Organism=Caenorhabditis elegans, GI71994604, Length=246, Percent_Identity=32.520325203252, Blast_Score=106, Evalue=9e-24, Organism=Caenorhabditis elegans, GI17562910, Length=253, Percent_Identity=31.6205533596838, Blast_Score=103, Evalue=9e-23, Organism=Caenorhabditis elegans, GI17564282, Length=257, Percent_Identity=30.7392996108949, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17561402, Length=254, Percent_Identity=29.9212598425197, Blast_Score=100, Evalue=9e-22, Organism=Caenorhabditis elegans, GI17560676, Length=243, Percent_Identity=28.3950617283951, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI25147288, Length=244, Percent_Identity=31.5573770491803, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI193203115, Length=206, Percent_Identity=31.0679611650485, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI193203117, Length=209, Percent_Identity=30.622009569378, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17555706, Length=246, Percent_Identity=30.8943089430894, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17508895, Length=191, Percent_Identity=28.7958115183246, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17562904, Length=255, Percent_Identity=30.1960784313725, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI71982365, Length=204, Percent_Identity=31.8627450980392, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17538480, Length=254, Percent_Identity=29.1338582677165, Blast_Score=88, Evalue=6e-18, Organism=Caenorhabditis elegans, GI115534694, Length=243, Percent_Identity=30.8641975308642, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17544670, Length=263, Percent_Identity=28.8973384030418, Blast_Score=84, Evalue=5e-17, Organism=Caenorhabditis elegans, GI17551412, Length=254, Percent_Identity=30.7086614173228, Blast_Score=84, Evalue=5e-17, Organism=Caenorhabditis elegans, GI17559104, Length=258, Percent_Identity=30.6201550387597, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17538182, Length=257, Percent_Identity=28.7937743190661, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17567345, Length=200, Percent_Identity=33, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17568967, Length=202, Percent_Identity=31.1881188118812, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI17560150, Length=260, Percent_Identity=28.0769230769231, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17560332, Length=254, Percent_Identity=27.5590551181102, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI17536025, Length=255, Percent_Identity=27.0588235294118, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI72000259, Length=257, Percent_Identity=26.8482490272374, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17562906, Length=255, Percent_Identity=27.843137254902, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17563726, Length=257, Percent_Identity=31.1284046692607, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17536651, Length=258, Percent_Identity=26.7441860465116, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17508651, Length=250, Percent_Identity=30.4, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17562908, Length=266, Percent_Identity=27.8195488721804, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17565030, Length=254, Percent_Identity=27.9527559055118, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17562990, Length=255, Percent_Identity=27.843137254902, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI193204405, Length=198, Percent_Identity=29.7979797979798, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17561272, Length=236, Percent_Identity=29.2372881355932, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17558628, Length=190, Percent_Identity=32.6315789473684, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17538486, Length=259, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17531453, Length=263, Percent_Identity=27.7566539923954, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17560220, Length=263, Percent_Identity=27.3764258555133, Blast_Score=68, Evalue=6e-12, Organism=Saccharomyces cerevisiae, GI6322861, Length=201, Percent_Identity=32.8358208955224, Blast_Score=90, Evalue=4e-19, Organism=Saccharomyces cerevisiae, GI6324126, Length=258, Percent_Identity=27.906976744186, Blast_Score=84, Evalue=2e-17, Organism=Drosophila melanogaster, GI24639444, Length=247, Percent_Identity=35.6275303643725, Blast_Score=117, Evalue=5e-27, Organism=Drosophila melanogaster, GI21357041, Length=244, Percent_Identity=31.1475409836066, Blast_Score=105, Evalue=2e-23, Organism=Drosophila melanogaster, GI24644339, Length=247, Percent_Identity=33.6032388663968, Blast_Score=104, Evalue=6e-23, Organism=Drosophila melanogaster, GI23397609, Length=252, Percent_Identity=32.5396825396825, Blast_Score=100, Evalue=9e-22, Organism=Drosophila melanogaster, GI24643142, Length=242, Percent_Identity=31.8181818181818, Blast_Score=95, Evalue=4e-20, Organism=Drosophila melanogaster, GI28571526, Length=245, Percent_Identity=31.8367346938775, Blast_Score=95, Evalue=5e-20, Organism=Drosophila melanogaster, GI17737361, Length=251, Percent_Identity=29.8804780876494, Blast_Score=91, Evalue=7e-19, Organism=Drosophila melanogaster, GI18859837, Length=192, Percent_Identity=31.7708333333333, Blast_Score=89, Evalue=2e-18, Organism=Drosophila melanogaster, GI21355319, Length=242, Percent_Identity=26.0330578512397, Blast_Score=89, Evalue=4e-18, Organism=Drosophila melanogaster, GI24581726, Length=196, Percent_Identity=29.0816326530612, Blast_Score=84, Evalue=8e-17, Organism=Drosophila melanogaster, GI21358495, Length=201, Percent_Identity=30.3482587064677, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI21357673, Length=223, Percent_Identity=32.2869955156951, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI24644337, Length=253, Percent_Identity=32.4110671936759, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI24665243, Length=206, Percent_Identity=28.6407766990291, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI45554248, Length=251, Percent_Identity=27.8884462151394, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24640117, Length=251, Percent_Identity=27.8884462151394, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI221331218, Length=206, Percent_Identity=28.6407766990291, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24665247, Length=207, Percent_Identity=28.5024154589372, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI281364892, Length=179, Percent_Identity=28.4916201117318, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI221331216, Length=207, Percent_Identity=28.5024154589372, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI221510726, Length=193, Percent_Identity=27.4611398963731, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011284 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.100 [H]
Molecular weight: Translated: 26566; Mature: 26434
Theoretical pI: Translated: 7.60; Mature: 7.60
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYKPLSRSVEGLRVLITGAASGMGRATAHVFADEGARVAVTDVTRDAAQPVAEAIQARG CCCCCCHHCCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEECCHHHHHHHHHHHHHHCC GDATAFALDVGDAAAIKAGVDAIAQALGGLDIVINNAGISVRLPIDDDGYDAGWDRALAV CCCEEEEEECCCHHHHHHHHHHHHHHHCCEEEEEECCCEEEEECCCCCCCCCCHHHHHHH MLSAHPRVIRAALPYLRKSSSPRIVNIASTEALGATAGHSAYSAAKAGVTGLTRSLAVEL HHHCCHHHHHHHHHHHHCCCCCCEEEEECCCHHCCCCCCHHHHHHHHCHHHHHHHHEEEE GPEGITVNCICPGPITTAMTDRISDDHKQKYARRRTALHRYGAPEEVAHMTLSLCLPAAS CCCCEEEEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH FLTGVVIPVDGGLMARNA HHCEEEEECCCCEEECCC >Mature Secondary Structure SYKPLSRSVEGLRVLITGAASGMGRATAHVFADEGARVAVTDVTRDAAQPVAEAIQARG CCCCCHHCCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEECCHHHHHHHHHHHHHHCC GDATAFALDVGDAAAIKAGVDAIAQALGGLDIVINNAGISVRLPIDDDGYDAGWDRALAV CCCEEEEEECCCHHHHHHHHHHHHHHHCCEEEEEECCCEEEEECCCCCCCCCCHHHHHHH MLSAHPRVIRAALPYLRKSSSPRIVNIASTEALGATAGHSAYSAAKAGVTGLTRSLAVEL HHHCCHHHHHHHHHHHHCCCCCCEEEEECCCHHCCCCCCHHHHHHHHCHHHHHHHHEEEE GPEGITVNCICPGPITTAMTDRISDDHKQKYARRRTALHRYGAPEEVAHMTLSLCLPAAS CCCCEEEEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH FLTGVVIPVDGGLMARNA HHCEEEEECCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10360571 [H]