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The map label for this gene is ubiD [H]

Identifier: 86751576

GI number: 86751576

Start: 5067751

End: 5069289

Strand: Direct

Name: ubiD [H]

Synonym: RPB_4478

Alternate gene names: 86751576

Gene position: 5067751-5069289 (Clockwise)

Preceding gene: 86751572

Following gene: 86751577

Centisome position: 95.05

GC content: 67.51

Gene sequence:

>1539_bases
ATGCTGAGCCGCGTCAAACCGCCCTTTCCGGACCTCCGCGCTTTCGCCGCCTATCTGGAATCCCGCGGGCAGTTGCACCG
GATCAAGAAGCCGGTCTCGGTGGTCCACGAACTGACCGAAATCCATCGCCGCGTGCTGCACGCCGGCGGCCCGGCGCTGC
TGATCGAACATCCGGTCAAGGCCGACGGCACGCCGTCGGAGATGCCGATTCTGGTCAATTTGTTCGGCACCGTCGAGCGG
GTGGCGTGGGGGCTCGGCATCGAACCGCAAAATCTGTCGGCGCTGGGCGAAGCGCTCGCCGAAATGCGCGAGCCGGCGCC
GCCGCAAAGCCTCACCGACGCATTGAGCAAATTGCCGATGGCCCGCGCAGCGCTGTCGATGCGGCCGAAGACCGCCAAGA
CCGCACCGGCGCAGGACGTGGTGCTGACCGGGGACGCGGTCGATCTCGGCCGGCTGCCGATCCAGATTCCGTGGCCGGGC
GAGCCGGCGCCGCTGATCACCTGGCCGCTGGTGTTCACCAGGCCGCCACCCGGCGCGCCCGGCACCGACAATGTCGGCGT
CTACCGCATCCAGGTGCTGGGCAAGGATCGCATCATCATGCGCTGGCTGGCGCATCGCGGCGGCGCCAAGCATCACCACC
AATGGAAGGCCGAGGGGCGCGAGATGCCGGTCGCGATCGTGATCGGCGCCGACCCGGCGATGATCCTGTCGGCGGTGCTG
CCGCTGCCGGAGAATATCTCCGAGATCAAATTCTCCGGGCTGCTGCGCGGCGACCGCCCGAGCATGACGCCCTGCGTCGG
GATTCCGCTGAACGTGCCGGCCGACGCCGAGATCGTGCTGGAAGGCTTCGTGTCGCCGACCGAGACCGCGCCGGAGGGCC
CCTATGGCGACCACACCGGCTATTACAACGCGGTCGAGGAATTCCCGGTGATGCGGATCACCGCGATCACGATGCGGCGC
AGTCCGATCTATCTGTCGACCTATACGGGGCGTCCGCCGGACGAGCCGTCGCGGCTCGGCGAGGCGTTCAACGACGTGTT
CCTCCCCGTCGCGCGGCGGCAGTTTCCGGAGATCGTCGATCTGTGGCTGCCGCCGGAGGCGTGCTCCTATCGAATTGCGG
TCGCCTCGATCAAGAAACGCTATCCCGGCCAGGCGCGGCGGCTGATGATGGGGCTGTGGTCGATGCTGCCGCAGTTCAGC
TACACCAAGCTTTTGATCATCGTCGACGACGACGTCGACGTGCGCGACTGGGCCGACGTGATGTGGGCGGTGTCGACCCG
CGCCGACACCTCGCGCGACATGCTGTCGATCAGCGATACGCCGATCGACTATCTCGATTTCGCCTCGCCGAAATCCGGGC
TCGGCGGCAAGCTGGGCATCGACGCCACCAACAAGATCGGCACCGAGACCGAGCGCGAATGGGGCAAGGTGCTGGAGATG
GACAAGGACGTGATCGCGCGGGTCGACGCAATGTGGTCGAGCCTCGGGCTGCCCCCGGCGCCGACGCCGGCCCTGGCGCA
ACGCAGGCTGCTGCGATGA

Upstream 100 bases:

>100_bases
GGAGTCTTCCGTTTAACCAGTCCCGCCGGTACTTCTTTGCGCCTGATCAAAGACAGACCCGATCCCAAGTGCTGACCAGA
AGCGTCCGCACGGAGACACC

Downstream 100 bases:

>100_bases
GCACGCCGCATCGCATCGTGGTCGGCATCAGCGGCGCATCGGGGGCCGCGGTCGGACTGCGCATCGTCGAACTGCTCGCC
ACCACGGATTGCGAGCTGCA

Product: carboxylyase-like protein

Products: NA

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase [H]

Number of amino acids: Translated: 512; Mature: 512

Protein sequence:

>512_residues
MLSRVKPPFPDLRAFAAYLESRGQLHRIKKPVSVVHELTEIHRRVLHAGGPALLIEHPVKADGTPSEMPILVNLFGTVER
VAWGLGIEPQNLSALGEALAEMREPAPPQSLTDALSKLPMARAALSMRPKTAKTAPAQDVVLTGDAVDLGRLPIQIPWPG
EPAPLITWPLVFTRPPPGAPGTDNVGVYRIQVLGKDRIIMRWLAHRGGAKHHHQWKAEGREMPVAIVIGADPAMILSAVL
PLPENISEIKFSGLLRGDRPSMTPCVGIPLNVPADAEIVLEGFVSPTETAPEGPYGDHTGYYNAVEEFPVMRITAITMRR
SPIYLSTYTGRPPDEPSRLGEAFNDVFLPVARRQFPEIVDLWLPPEACSYRIAVASIKKRYPGQARRLMMGLWSMLPQFS
YTKLLIIVDDDVDVRDWADVMWAVSTRADTSRDMLSISDTPIDYLDFASPKSGLGGKLGIDATNKIGTETEREWGKVLEM
DKDVIARVDAMWSSLGLPPAPTPALAQRRLLR

Sequences:

>Translated_512_residues
MLSRVKPPFPDLRAFAAYLESRGQLHRIKKPVSVVHELTEIHRRVLHAGGPALLIEHPVKADGTPSEMPILVNLFGTVER
VAWGLGIEPQNLSALGEALAEMREPAPPQSLTDALSKLPMARAALSMRPKTAKTAPAQDVVLTGDAVDLGRLPIQIPWPG
EPAPLITWPLVFTRPPPGAPGTDNVGVYRIQVLGKDRIIMRWLAHRGGAKHHHQWKAEGREMPVAIVIGADPAMILSAVL
PLPENISEIKFSGLLRGDRPSMTPCVGIPLNVPADAEIVLEGFVSPTETAPEGPYGDHTGYYNAVEEFPVMRITAITMRR
SPIYLSTYTGRPPDEPSRLGEAFNDVFLPVARRQFPEIVDLWLPPEACSYRIAVASIKKRYPGQARRLMMGLWSMLPQFS
YTKLLIIVDDDVDVRDWADVMWAVSTRADTSRDMLSISDTPIDYLDFASPKSGLGGKLGIDATNKIGTETEREWGKVLEM
DKDVIARVDAMWSSLGLPPAPTPALAQRRLLR
>Mature_512_residues
MLSRVKPPFPDLRAFAAYLESRGQLHRIKKPVSVVHELTEIHRRVLHAGGPALLIEHPVKADGTPSEMPILVNLFGTVER
VAWGLGIEPQNLSALGEALAEMREPAPPQSLTDALSKLPMARAALSMRPKTAKTAPAQDVVLTGDAVDLGRLPIQIPWPG
EPAPLITWPLVFTRPPPGAPGTDNVGVYRIQVLGKDRIIMRWLAHRGGAKHHHQWKAEGREMPVAIVIGADPAMILSAVL
PLPENISEIKFSGLLRGDRPSMTPCVGIPLNVPADAEIVLEGFVSPTETAPEGPYGDHTGYYNAVEEFPVMRITAITMRR
SPIYLSTYTGRPPDEPSRLGEAFNDVFLPVARRQFPEIVDLWLPPEACSYRIAVASIKKRYPGQARRLMMGLWSMLPQFS
YTKLLIIVDDDVDVRDWADVMWAVSTRADTSRDMLSISDTPIDYLDFASPKSGLGGKLGIDATNKIGTETEREWGKVLEM
DKDVIARVDAMWSSLGLPPAPTPALAQRRLLR

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol [H]

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=492, Percent_Identity=53.6585365853659, Blast_Score=542, Evalue=1e-155,
Organism=Saccharomyces cerevisiae, GI6320748, Length=236, Percent_Identity=28.3898305084746, Blast_Score=85, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: 4.1.1.-

Molecular weight: Translated: 56325; Mature: 56325

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSRVKPPFPDLRAFAAYLESRGQLHRIKKPVSVVHELTEIHRRVLHAGGPALLIEHPVK
CCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
ADGTPSEMPILVNLFGTVERVAWGLGIEPQNLSALGEALAEMREPAPPQSLTDALSKLPM
CCCCCCCCCEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCHH
ARAALSMRPKTAKTAPAQDVVLTGDAVDLGRLPIQIPWPGEPAPLITWPLVFTRPPPGAP
HHHHHHCCCCCCCCCCCCCEEEECCCEECCCCEEECCCCCCCCCEEEEEEEEECCCCCCC
GTDNVGVYRIQVLGKDRIIMRWLAHRGGAKHHHQWKAEGREMPVAIVIGADPAMILSAVL
CCCCCCEEEEEEECCCHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEECCCHHHHHHHHC
PLPENISEIKFSGLLRGDRPSMTPCVGIPLNVPADAEIVLEGFVSPTETAPEGPYGDHTG
CCCCCHHHHHHHHEECCCCCCCCCEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC
YYNAVEEFPVMRITAITMRRSPIYLSTYTGRPPDEPSRLGEAFNDVFLPVARRQFPEIVD
HHHHHHHCCCEEEEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHH
LWLPPEACSYRIAVASIKKRYPGQARRLMMGLWSMLPQFSYTKLLIIVDDDVDVRDWADV
HCCCCHHHCEEHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHH
MWAVSTRADTSRDMLSISDTPIDYLDFASPKSGLGGKLGIDATNKIGTETEREWGKVLEM
HHHHHCCCCCCCCEEEECCCCCHHHHCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHC
DKDVIARVDAMWSSLGLPPAPTPALAQRRLLR
CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCC
>Mature Secondary Structure
MLSRVKPPFPDLRAFAAYLESRGQLHRIKKPVSVVHELTEIHRRVLHAGGPALLIEHPVK
CCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
ADGTPSEMPILVNLFGTVERVAWGLGIEPQNLSALGEALAEMREPAPPQSLTDALSKLPM
CCCCCCCCCEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCHH
ARAALSMRPKTAKTAPAQDVVLTGDAVDLGRLPIQIPWPGEPAPLITWPLVFTRPPPGAP
HHHHHHCCCCCCCCCCCCCEEEECCCEECCCCEEECCCCCCCCCEEEEEEEEECCCCCCC
GTDNVGVYRIQVLGKDRIIMRWLAHRGGAKHHHQWKAEGREMPVAIVIGADPAMILSAVL
CCCCCCEEEEEEECCCHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEECCCHHHHHHHHC
PLPENISEIKFSGLLRGDRPSMTPCVGIPLNVPADAEIVLEGFVSPTETAPEGPYGDHTG
CCCCCHHHHHHHHEECCCCCCCCCEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC
YYNAVEEFPVMRITAITMRRSPIYLSTYTGRPPDEPSRLGEAFNDVFLPVARRQFPEIVD
HHHHHHHCCCEEEEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHH
LWLPPEACSYRIAVASIKKRYPGQARRLMMGLWSMLPQFSYTKLLIIVDDDVDVRDWADV
HCCCCHHHCEEHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHH
MWAVSTRADTSRDMLSISDTPIDYLDFASPKSGLGGKLGIDATNKIGTETEREWGKVLEM
HHHHHCCCCCCCCEEEECCCCCHHHHCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHC
DKDVIARVDAMWSSLGLPPAPTPALAQRRLLR
CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 14500782 [H]