BacMap

Definition	Rhodopseudomonas palustris HaA2, complete genome.
Accession	NC_007778
Length	5,331,656

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The map label for this gene is sorD [H]

Identifier: 86751488

GI number: 86751488

Start: 4970948

End: 4971730

Strand: Reverse

Name: sorD [H]

Synonym: RPB_4387

Alternate gene names: 86751488

Gene position: 4971730-4970948 (Counterclockwise)

Preceding gene: 86751489

Following gene: 86751487

Centisome position: 93.25

GC content: 69.6

Gene sequence:

>783_bases
ATGAGCTTCGATCTCGGGTTGAAAGGCCGTCGTGCGCTGGTCACCGGCGGCACGAAGGGAATCGGCGCGGCCGTGGTCCA
CGCGTTGGCCGAGGCCGGAGTCGAGCTGGTGACGACCGCAAGGTCGGTGCCGGACGCGCGCGTGAGCCATGCCGACTACG
TGGCCGCCGATCTGACGACCGCAGCCGGCTGCGCCCGGGTGGCCGACGCGGTCAGGCAACGGTTCGGCGGCATCGATATC
ATCGTCCATGTCGTCGGCGGATCGACGGCGCCCGCCGGCGGCTATCTGGCGCTCGGCGATGCCGTCTGGGCCGATGAAAT
CAACGCCAATTTGATGGCCGCGGTGCGGCTGGACCGCGCTCTGGTGCCGCTGATGGTGGCGCAAGGGTCTGGCGTCGTCG
TTCGCGTCACCTCGATTCAGCACGAGCTGCCGTTGCCCGACTCCACGACCGCCTACGCGGCGGCCAAAGCAGCGCTCTCG
ACCTACAGCAAAAGCCTGTCGAAGGAAGTCACGCCCAAGGGCGTCCGCGTCCTTCGCGTGGCGCCGGGCTGGGTCGAAAC
CGAAGCCGCAGTCCGCCTCGCCGAGCGCATCGCGGCCGAGGCCGGTACCGACTACGAAGGAGGCAAGCGGATCATCATGG
CCGGCCTCGGTGGCGTGCCGCTCGGCCGCCCGAGCCGCCCGGACGAAGTCGCGGACCTCGTCACCTTTCTCGTATCGGCC
CGCGCCAGCGCCGTCACCGGAGCCGAATATCGCATCGACGGCGGCACAGTGCCGACGGCGTGA

Upstream 100 bases:

>100_bases
TGACGTGCCGGGTCACCGGAAACTTCCCCGGCAGTCCGGTCGATCTCCGCTACCGCTTCCGGCTCGCCGGCGACAAGATC
GCGTCGCTGGAGATCGTCCC

Downstream 100 bases:

>100_bases
TGCGCGCACGAGCTCGAAGCACAGGCCATGGTGCTTCGCGATCCGATGCGGGCCGGACGACGATTGCAATTGTAGCGCGG
TCGGAGCGCCGCGACATCGA

Product: short chain dehydrogenase

Products: NA

Alternate protein names: Glucitol-6-phosphate dehydrogenase; Ketosephosphate reductase [H]

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MSFDLGLKGRRALVTGGTKGIGAAVVHALAEAGVELVTTARSVPDARVSHADYVAADLTTAAGCARVADAVRQRFGGIDI
IVHVVGGSTAPAGGYLALGDAVWADEINANLMAAVRLDRALVPLMVAQGSGVVVRVTSIQHELPLPDSTTAYAAAKAALS
TYSKSLSKEVTPKGVRVLRVAPGWVETEAAVRLAERIAAEAGTDYEGGKRIIMAGLGGVPLGRPSRPDEVADLVTFLVSA
RASAVTGAEYRIDGGTVPTA

Sequences:

>Translated_260_residues
MSFDLGLKGRRALVTGGTKGIGAAVVHALAEAGVELVTTARSVPDARVSHADYVAADLTTAAGCARVADAVRQRFGGIDI
IVHVVGGSTAPAGGYLALGDAVWADEINANLMAAVRLDRALVPLMVAQGSGVVVRVTSIQHELPLPDSTTAYAAAKAALS
TYSKSLSKEVTPKGVRVLRVAPGWVETEAAVRLAERIAAEAGTDYEGGKRIIMAGLGGVPLGRPSRPDEVADLVTFLVSA
RASAVTGAEYRIDGGTVPTA
>Mature_259_residues
SFDLGLKGRRALVTGGTKGIGAAVVHALAEAGVELVTTARSVPDARVSHADYVAADLTTAAGCARVADAVRQRFGGIDII
VHVVGGSTAPAGGYLALGDAVWADEINANLMAAVRLDRALVPLMVAQGSGVVVRVTSIQHELPLPDSTTAYAAAKAALST
YSKSLSKEVTPKGVRVLRVAPGWVETEAAVRLAERIAAEAGTDYEGGKRIIMAGLGGVPLGRPSRPDEVADLVTFLVSAR
ASAVTGAEYRIDGGTVPTA

Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=260, Percent_Identity=29.6153846153846, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI19923817, Length=266, Percent_Identity=28.9473684210526, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI40254992, Length=248, Percent_Identity=27.4193548387097, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI109715829, Length=256, Percent_Identity=27.34375, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI7705925, Length=259, Percent_Identity=25.8687258687259, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI7705855, Length=197, Percent_Identity=28.9340101522843, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI66933014, Length=204, Percent_Identity=27.4509803921569, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI5031737, Length=257, Percent_Identity=26.0700389105058, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI20149619, Length=201, Percent_Identity=27.363184079602, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI126723750, Length=261, Percent_Identity=26.8199233716475, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI32455239, Length=207, Percent_Identity=27.536231884058, Blast_Score=64, Evalue=1e-10,
Organism=Homo sapiens, GI5031765, Length=207, Percent_Identity=27.536231884058, Blast_Score=64, Evalue=1e-10,
Organism=Escherichia coli, GI1787335, Length=258, Percent_Identity=31.7829457364341, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI87082100, Length=262, Percent_Identity=30.1526717557252, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI87082160, Length=265, Percent_Identity=27.5471698113208, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1786812, Length=252, Percent_Identity=28.968253968254, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1789378, Length=260, Percent_Identity=28.8461538461538, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788459, Length=256, Percent_Identity=29.296875, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790717, Length=262, Percent_Identity=24.4274809160305, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1789208, Length=264, Percent_Identity=24.6212121212121, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI2367365, Length=254, Percent_Identity=28.3464566929134, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787905, Length=270, Percent_Identity=28.1481481481481, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI2367175, Length=263, Percent_Identity=29.6577946768061, Blast_Score=62, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI71994604, Length=256, Percent_Identity=31.640625, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI71994600, Length=257, Percent_Identity=29.5719844357977, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17560676, Length=259, Percent_Identity=29.7297297297297, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17562910, Length=265, Percent_Identity=29.0566037735849, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17565030, Length=263, Percent_Identity=29.6577946768061, Blast_Score=87, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI17563726, Length=268, Percent_Identity=25.3731343283582, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17562904, Length=267, Percent_Identity=25.8426966292135, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17561402, Length=260, Percent_Identity=26.9230769230769, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17538480, Length=268, Percent_Identity=26.865671641791, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI25147288, Length=260, Percent_Identity=28.4615384615385, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17562906, Length=270, Percent_Identity=27.7777777777778, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17531453, Length=274, Percent_Identity=27.3722627737226, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17544670, Length=269, Percent_Identity=26.3940520446097, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17560332, Length=265, Percent_Identity=26.4150943396226, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17562990, Length=268, Percent_Identity=25.3731343283582, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI72000259, Length=269, Percent_Identity=24.5353159851301, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17560150, Length=268, Percent_Identity=25, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17559104, Length=262, Percent_Identity=24.4274809160305, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17562908, Length=268, Percent_Identity=25.7462686567164, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=260, Percent_Identity=25.3846153846154, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17538486, Length=261, Percent_Identity=26.0536398467433, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17555706, Length=262, Percent_Identity=25.9541984732824, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17560220, Length=271, Percent_Identity=24.7232472324723, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI193204405, Length=278, Percent_Identity=26.6187050359712, Blast_Score=69, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6323882, Length=257, Percent_Identity=26.8482490272374, Blast_Score=73, Evalue=4e-14,
Organism=Drosophila melanogaster, GI23397609, Length=262, Percent_Identity=32.0610687022901, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI21355319, Length=263, Percent_Identity=29.277566539924, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24644339, Length=261, Percent_Identity=27.9693486590038, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI28571526, Length=259, Percent_Identity=28.957528957529, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI21357041, Length=265, Percent_Identity=28.6792452830189, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24584744, Length=193, Percent_Identity=30.0518134715026, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI28574402, Length=193, Percent_Identity=30.0518134715026, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24639444, Length=259, Percent_Identity=25.8687258687259, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24640442, Length=212, Percent_Identity=27.3584905660377, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21358495, Length=203, Percent_Identity=25.615763546798, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24643142, Length=250, Percent_Identity=26.8, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24644337, Length=211, Percent_Identity=27.9620853080569, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.140 [H]

Molecular weight: Translated: 26550; Mature: 26418

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFDLGLKGRRALVTGGTKGIGAAVVHALAEAGVELVTTARSVPDARVSHADYVAADLTT
CCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCHHEEHHHHCCCCCHHCCHHHHHHHHHH
AAGCARVADAVRQRFGGIDIIVHVVGGSTAPAGGYLALGDAVWADEINANLMAAVRLDRA
HHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCEEEECCCHHHHHCCCHHHHHHHHHHH
LVPLMVAQGSGVVVRVTSIQHELPLPDSTTAYAAAKAALSTYSKSLSKEVTPKGVRVLRV
HHHHEEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
APGWVETEAAVRLAERIAAEAGTDYEGGKRIIMAGLGGVPLGRPSRPDEVADLVTFLVSA
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
RASAVTGAEYRIDGGTVPTA
HHHHCCCCEEEECCCCCCCC
>Mature Secondary Structure 
SFDLGLKGRRALVTGGTKGIGAAVVHALAEAGVELVTTARSVPDARVSHADYVAADLTT
CCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCHHEEHHHHCCCCCHHCCHHHHHHHHHH
AAGCARVADAVRQRFGGIDIIVHVVGGSTAPAGGYLALGDAVWADEINANLMAAVRLDRA
HHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCEEEECCCHHHHHCCCHHHHHHHHHHH
LVPLMVAQGSGVVVRVTSIQHELPLPDSTTAYAAAKAALSTYSKSLSKEVTPKGVRVLRV
HHHHEEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
APGWVETEAAVRLAERIAAEAGTDYEGGKRIIMAGLGGVPLGRPSRPDEVADLVTFLVSA
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
RASAVTGAEYRIDGGTVPTA
HHHHCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7947968; 7652212 [H]