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The map label for this gene is 86751362

Identifier: 86751362

GI number: 86751362

Start: 4844586

End: 4845851

Strand: Reverse

Name: 86751362

Synonym: RPB_4259

Alternate gene names: NA

Gene position: 4845851-4844586 (Counterclockwise)

Preceding gene: 86751363

Following gene: 86751359

Centisome position: 90.89

GC content: 69.43

Gene sequence:

>1266_bases
ATGACCGACCTCGCCTGGATCGACACCGCGATCACGGCGTCCCGGCCCCAGGCGATCGGCGCGCTGCTGCGCTATTTCCG
CGATCTCGACACCGCCGAGGAGGCGTTCCAGAACGCCTGCCTGCGGGCGCTGAAAGCCTGGCCGCAGAACGGCCCGCCGC
GCGATCCGGCCGCATGGCTGATCCTGGTCGGCCGCAATGTCGCGATCGACGACCTCCGCCGCGGCAAGAAGCAACAGCCG
CTGCCCGACGACGAAGCGATCTCCGATCTCGACGACGCCGAGAGCGCGCTCGCCGAGCGGCTCGACGGCTCGCATTATCG
CGACGACATCCTGCGGCTGCTGTTCATCTGCTGTCATCCCGAATTGCCGCCCACCCAGCAGATCGCGCTGGCGCTGCGCA
TCGTCTCGGGGCTGACCGTGCCGCAGATCGCGCGGGCGTTTCTGGTGTCGGACGCGGCGATGGAGCAGCGCATCACCCGC
GCCAAGGCCAAAGTCGCCCGCGCCCGCGTGCCGTTCGAAACCCCGGGCGCGCCGGAGCGCAGCGAACGGCTGGGCGCGGT
GGCGGCGATGATCTACCTGGTCTTCAACGAGGGCTATTCGGCGTCGGGCGACACTGCGGGAATCCGCGCGCCCTTGTGCG
AGGAGGCGATCCGGCTGGCGCGGCTGCTGCTGCGGCTGTTTCCGTCCGAGCCCGAGATCATGGGGCTCACTGCTTTGATG
CTGCTGCAGCATGCGCGCGCGCCGGCGCGCTTCGATGCCCATGGCGAGATCGTGCTGCTCGACGAGCAGGACCGCGGCCT
GTGGGACACAAAGCTGATCGCCGAGGGCCTGGCGCTGATCGACAAGGCGATGCGTCATCGCCGCACCGGCGCGTATCAGA
TCCAGGCCGCGATCGCCGCCCTGCACGCCCGTGCGACCCGGCCCGAGGATACCGACTGGGCGCAGATCGATCTGCTGTAC
GGCTCGCTGGAGATCCTGCAGCCGTCGCCGGTGATCACGCTCAACCGCGCGGTCGCGGTGTCCAAAGTGCGCGGCGCCGA
GGCGGCGCTGGCGATGATCGCACCGCTGGAAGAGAGGTTGTCGAACTACTTCCATTATTTCGGCACCAGGGGCGCGCTGC
TGCTGCAGCTGGGTCGCCGTGACGAGGCGCGGACCGCCTTCGACCGCGCCATCGCGCTGGCCCGGACCACCGCCGAGGCC
AACCACATCCGCATGCATCTCGACCGCTCGAAGCGCGACGACGCGGCCGAGCGGATCAATCCGTAG

Upstream 100 bases:

>100_bases
ACGGCGCGCTCGATGTCGCGCGCGATCTCGCTTTGGCCAATCCGGGCGGCGCCTACGAGATCCGTCCGATCGGCCTGTTC
ATGCCGGGAGCCGCGCAGCC

Downstream 100 bases:

>100_bases
GGTAGGCGCAGCGCAGCCGGCCGCATCCTTCGAGGCTCGCCCAAGAGGGCGAGCACCTCAGGATGACGCTGTGCTTGTCT
CGAGCCCCACAACAGGGACT

Product: putative sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 421; Mature: 420

Protein sequence:

>421_residues
MTDLAWIDTAITASRPQAIGALLRYFRDLDTAEEAFQNACLRALKAWPQNGPPRDPAAWLILVGRNVAIDDLRRGKKQQP
LPDDEAISDLDDAESALAERLDGSHYRDDILRLLFICCHPELPPTQQIALALRIVSGLTVPQIARAFLVSDAAMEQRITR
AKAKVARARVPFETPGAPERSERLGAVAAMIYLVFNEGYSASGDTAGIRAPLCEEAIRLARLLLRLFPSEPEIMGLTALM
LLQHARAPARFDAHGEIVLLDEQDRGLWDTKLIAEGLALIDKAMRHRRTGAYQIQAAIAALHARATRPEDTDWAQIDLLY
GSLEILQPSPVITLNRAVAVSKVRGAEAALAMIAPLEERLSNYFHYFGTRGALLLQLGRRDEARTAFDRAIALARTTAEA
NHIRMHLDRSKRDDAAERINP

Sequences:

>Translated_421_residues
MTDLAWIDTAITASRPQAIGALLRYFRDLDTAEEAFQNACLRALKAWPQNGPPRDPAAWLILVGRNVAIDDLRRGKKQQP
LPDDEAISDLDDAESALAERLDGSHYRDDILRLLFICCHPELPPTQQIALALRIVSGLTVPQIARAFLVSDAAMEQRITR
AKAKVARARVPFETPGAPERSERLGAVAAMIYLVFNEGYSASGDTAGIRAPLCEEAIRLARLLLRLFPSEPEIMGLTALM
LLQHARAPARFDAHGEIVLLDEQDRGLWDTKLIAEGLALIDKAMRHRRTGAYQIQAAIAALHARATRPEDTDWAQIDLLY
GSLEILQPSPVITLNRAVAVSKVRGAEAALAMIAPLEERLSNYFHYFGTRGALLLQLGRRDEARTAFDRAIALARTTAEA
NHIRMHLDRSKRDDAAERINP
>Mature_420_residues
TDLAWIDTAITASRPQAIGALLRYFRDLDTAEEAFQNACLRALKAWPQNGPPRDPAAWLILVGRNVAIDDLRRGKKQQPL
PDDEAISDLDDAESALAERLDGSHYRDDILRLLFICCHPELPPTQQIALALRIVSGLTVPQIARAFLVSDAAMEQRITRA
KAKVARARVPFETPGAPERSERLGAVAAMIYLVFNEGYSASGDTAGIRAPLCEEAIRLARLLLRLFPSEPEIMGLTALML
LQHARAPARFDAHGEIVLLDEQDRGLWDTKLIAEGLALIDKAMRHRRTGAYQIQAAIAALHARATRPEDTDWAQIDLLYG
SLEILQPSPVITLNRAVAVSKVRGAEAALAMIAPLEERLSNYFHYFGTRGALLLQLGRRDEARTAFDRAIALARTTAEAN
HIRMHLDRSKRDDAAERINP

Specific function: Unknown

COG id: COG4941

COG function: function code K; Predicted RNA polymerase sigma factor containing a TPR repeat domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008940
- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 46599; Mature: 46468

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDLAWIDTAITASRPQAIGALLRYFRDLDTAEEAFQNACLRALKAWPQNGPPRDPAAWL
CCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
ILVGRNVAIDDLRRGKKQQPLPDDEAISDLDDAESALAERLDGSHYRDDILRLLFICCHP
EEECCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
ELPPTQQIALALRIVSGLTVPQIARAFLVSDAAMEQRITRAKAKVARARVPFETPGAPER
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
SERLGAVAAMIYLVFNEGYSASGDTAGIRAPLCEEAIRLARLLLRLFPSEPEIMGLTALM
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
LLQHARAPARFDAHGEIVLLDEQDRGLWDTKLIAEGLALIDKAMRHRRTGAYQIQAAIAA
HHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LHARATRPEDTDWAQIDLLYGSLEILQPSPVITLNRAVAVSKVRGAEAALAMIAPLEERL
HHHHCCCCCCCCCEEEEEEECCCEEECCCCCEEECHHHHHHHHCCHHHHHHHHHHHHHHH
SNYFHYFGTRGALLLQLGRRDEARTAFDRAIALARTTAEANHIRMHLDRSKRDDAAERIN
HHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCC
P
C
>Mature Secondary Structure 
TDLAWIDTAITASRPQAIGALLRYFRDLDTAEEAFQNACLRALKAWPQNGPPRDPAAWL
CCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
ILVGRNVAIDDLRRGKKQQPLPDDEAISDLDDAESALAERLDGSHYRDDILRLLFICCHP
EEECCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
ELPPTQQIALALRIVSGLTVPQIARAFLVSDAAMEQRITRAKAKVARARVPFETPGAPER
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
SERLGAVAAMIYLVFNEGYSASGDTAGIRAPLCEEAIRLARLLLRLFPSEPEIMGLTALM
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
LLQHARAPARFDAHGEIVLLDEQDRGLWDTKLIAEGLALIDKAMRHRRTGAYQIQAAIAA
HHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LHARATRPEDTDWAQIDLLYGSLEILQPSPVITLNRAVAVSKVRGAEAALAMIAPLEERL
HHHHCCCCCCCCCEEEEEEECCCEEECCCCCEEECHHHHHHHHCCHHHHHHHHHHHHHHH
SNYFHYFGTRGALLLQLGRRDEARTAFDRAIALARTTAEANHIRMHLDRSKRDDAAERIN
HHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCC
P
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430; 7751302 [H]