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The map label for this gene is 86751307

Identifier: 86751307

GI number: 86751307

Start: 4772482

End: 4773927

Strand: Direct

Name: 86751307

Synonym: RPB_4200

Alternate gene names: NA

Gene position: 4772482-4773927 (Clockwise)

Preceding gene: 86751303

Following gene: 86751308

Centisome position: 89.51

GC content: 66.6

Gene sequence:

>1446_bases
ATGGCGGGTGAATCCGGGAAAAAACTGTTCGTCGGCCCCCGGTTCCGGCGAATCCGGCAGCAACTCGGCCTGTCGCAGAC
CCAGATTGCCGAAGGGCTCGGGATTTCGCCGAGCTATATCAATCTGATCGAACGGAACCAGCGCCCCGTGACCGCCCAGA
TTCTGCTCAGGCTGGCGGAGACCTACGATCTCGATCTGCGTGACCTCGCGACCGCCGACGAGGACCGTTTTTTCGCCGAA
CTCAACGAGATCTTCTCCGACCCGCTGTTCCGCCAGATCGACCTGCCGAAGCAGGAACTGCGCGACCTCGCCGAGCTGTG
CCCCGGCGTCACCCACTCGCTGCAGCGATTGTACGCCGCCTACACCGAAGCGCGGCGCGGCGAGACGCTGGTCGCGGCGC
AGATGGCCGATCGCGACGAGGGCACCAGGTTCGAGGCCAACCCGATCGAGCGCGTCCGCGACCTGATCGAGGCCAACCGC
AACTATTTCCCGGAGCTCGAGCAGGCCGCCGAGGCGGTGCGCGACGAACTGAATGTCGGCTCGCAGGAGGTCTATGGCGC
GCTCGCCGACCGGCTGCGCGAGCGGCATTCGATCACCACCCGGATCATGCCGGTCGACGTGATGCGCGAGACGCTGCGCC
GGTTCGACCGCCACCGCCGGCAATTGCTGATCTCCGAACTGGTCGACTCGCAGGGCCGCGCCTTCCAGGCCGCGTTCCAG
ACCGGCCTCACCGAATATGGCAGCGTGATCGACGGCATCGTCAACCGCGCCGGCGCCCTCGACGAGCCGGCGCGGCGACT
CTACCGGATCACGCTCGGCAATTACTTCGCCGCCGCGCTGATGATGCCCTACGCCGCTTTCCATGCCGCCGCCGAACAGC
TCAGCTACGATGTCAACGTGCTGGCGCAGCGCTTCAACGCCGGCTTCGAGCAGGTCTGCCATCGCCTCACCACGCTGCAA
CGGCCGACCGCGCGCGGCGTGCCGTTCTTCCTGCTGCGGGTCGACAACGCCGGCAACGTCTCCAAGCGGTTCTCCTCCGG
CACCTTCCCGTTCTCGAAATTCGGCGGAACCTGCCCGTTGTGGAACGTGCACTCGACCTTCGATACGCCAGACCGGCTGC
TGAAACAGGTGATCGAACTGCCCGACGGCAGCCGCTATTTCTCGATCGCCCAGATGGTGCGCCGGCCGGTGGCGCCGCAC
CCGCAGCCGCAGCCGCGCTTCGCCATCGGGCTCGGCTGCGAAATCCGCCACGCGTCGAAGCTGACCTACGCCGCCGGCAT
GGACCTGGAGAAAGCCGAAGGCACGCCGATCGGCGTCAACTGCCGCCTCTGCGAACGCGAAAACTGCAGCCAGCGCGCCG
AGCCGCCGATCACCCGGACGCTGATCCTGGACGAGAACACGCGGCGGGCGTCGAGCTTTGCGTTCAGCAATGCAAGGGAG
TTGTGA

Upstream 100 bases:

>100_bases
ACGGCTAGACCTCTTGCGACCGAATGGTGATGTCATGTAACTTTCCTACATGTCACAAATGTAATTTTGTCAATTTTGTC
ACAAGACGCCGGGAGCGAAC

Downstream 100 bases:

>100_bases
GGGTGGCAGATGTAACCCAAATGTGTTACAAAGCCTGATGCCTACAAAACCCCGTGCCAAATCTCCGTCTCGAGCAACGA
CCGGGCAGCCGGCCCGGCTG

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 481; Mature: 480

Protein sequence:

>481_residues
MAGESGKKLFVGPRFRRIRQQLGLSQTQIAEGLGISPSYINLIERNQRPVTAQILLRLAETYDLDLRDLATADEDRFFAE
LNEIFSDPLFRQIDLPKQELRDLAELCPGVTHSLQRLYAAYTEARRGETLVAAQMADRDEGTRFEANPIERVRDLIEANR
NYFPELEQAAEAVRDELNVGSQEVYGALADRLRERHSITTRIMPVDVMRETLRRFDRHRRQLLISELVDSQGRAFQAAFQ
TGLTEYGSVIDGIVNRAGALDEPARRLYRITLGNYFAAALMMPYAAFHAAAEQLSYDVNVLAQRFNAGFEQVCHRLTTLQ
RPTARGVPFFLLRVDNAGNVSKRFSSGTFPFSKFGGTCPLWNVHSTFDTPDRLLKQVIELPDGSRYFSIAQMVRRPVAPH
PQPQPRFAIGLGCEIRHASKLTYAAGMDLEKAEGTPIGVNCRLCERENCSQRAEPPITRTLILDENTRRASSFAFSNARE
L

Sequences:

>Translated_481_residues
MAGESGKKLFVGPRFRRIRQQLGLSQTQIAEGLGISPSYINLIERNQRPVTAQILLRLAETYDLDLRDLATADEDRFFAE
LNEIFSDPLFRQIDLPKQELRDLAELCPGVTHSLQRLYAAYTEARRGETLVAAQMADRDEGTRFEANPIERVRDLIEANR
NYFPELEQAAEAVRDELNVGSQEVYGALADRLRERHSITTRIMPVDVMRETLRRFDRHRRQLLISELVDSQGRAFQAAFQ
TGLTEYGSVIDGIVNRAGALDEPARRLYRITLGNYFAAALMMPYAAFHAAAEQLSYDVNVLAQRFNAGFEQVCHRLTTLQ
RPTARGVPFFLLRVDNAGNVSKRFSSGTFPFSKFGGTCPLWNVHSTFDTPDRLLKQVIELPDGSRYFSIAQMVRRPVAPH
PQPQPRFAIGLGCEIRHASKLTYAAGMDLEKAEGTPIGVNCRLCERENCSQRAEPPITRTLILDENTRRASSFAFSNARE
L
>Mature_480_residues
AGESGKKLFVGPRFRRIRQQLGLSQTQIAEGLGISPSYINLIERNQRPVTAQILLRLAETYDLDLRDLATADEDRFFAEL
NEIFSDPLFRQIDLPKQELRDLAELCPGVTHSLQRLYAAYTEARRGETLVAAQMADRDEGTRFEANPIERVRDLIEANRN
YFPELEQAAEAVRDELNVGSQEVYGALADRLRERHSITTRIMPVDVMRETLRRFDRHRRQLLISELVDSQGRAFQAAFQT
GLTEYGSVIDGIVNRAGALDEPARRLYRITLGNYFAAALMMPYAAFHAAAEQLSYDVNVLAQRFNAGFEQVCHRLTTLQR
PTARGVPFFLLRVDNAGNVSKRFSSGTFPFSKFGGTCPLWNVHSTFDTPDRLLKQVIELPDGSRYFSIAQMVRRPVAPHP
QPQPRFAIGLGCEIRHASKLTYAAGMDLEKAEGTPIGVNCRLCERENCSQRAEPPITRTLILDENTRRASSFAFSNAREL

Specific function: Unknown

COG id: COG3800

COG function: function code R; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018653
- InterPro:   IPR010359
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF09856 DUF2083; PF06114 DUF955; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 54371; Mature: 54240

Theoretical pI: Translated: 7.80; Mature: 7.80

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGESGKKLFVGPRFRRIRQQLGLSQTQIAEGLGISPSYINLIERNQRPVTAQILLRLAE
CCCCCCCEEEECHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
TYDLDLRDLATADEDRFFAELNEIFSDPLFRQIDLPKQELRDLAELCPGVTHSLQRLYAA
HCCCCHHHHHCCCHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHH
YTEARRGETLVAAQMADRDEGTRFEANPIERVRDLIEANRNYFPELEQAAEAVRDELNVG
HHHHHCCCEEEEHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC
SQEVYGALADRLRERHSITTRIMPVDVMRETLRRFDRHRRQLLISELVDSQGRAFQAAFQ
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
TGLTEYGSVIDGIVNRAGALDEPARRLYRITLGNYFAAALMMPYAAFHAAAEQLSYDVNV
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAQRFNAGFEQVCHRLTTLQRPTARGVPFFLLRVDNAGNVSKRFSSGTFPFSKFGGTCPL
HHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHCCCCCCHHHCCCCCCC
WNVHSTFDTPDRLLKQVIELPDGSRYFSIAQMVRRPVAPHPQPQPRFAIGLGCEIRHASK
CCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEECCCEEHHHCH
LTYAAGMDLEKAEGTPIGVNCRLCERENCSQRAEPPITRTLILDENTRRASSFAFSNARE
HHHHHCCCCHHCCCCCCCCEEEECCCCCCHHCCCCCCEEEEEECCCCCHHHHHHHHHCCC
L
C
>Mature Secondary Structure 
AGESGKKLFVGPRFRRIRQQLGLSQTQIAEGLGISPSYINLIERNQRPVTAQILLRLAE
CCCCCCEEEECHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
TYDLDLRDLATADEDRFFAELNEIFSDPLFRQIDLPKQELRDLAELCPGVTHSLQRLYAA
HCCCCHHHHHCCCHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHH
YTEARRGETLVAAQMADRDEGTRFEANPIERVRDLIEANRNYFPELEQAAEAVRDELNVG
HHHHHCCCEEEEHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC
SQEVYGALADRLRERHSITTRIMPVDVMRETLRRFDRHRRQLLISELVDSQGRAFQAAFQ
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
TGLTEYGSVIDGIVNRAGALDEPARRLYRITLGNYFAAALMMPYAAFHAAAEQLSYDVNV
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAQRFNAGFEQVCHRLTTLQRPTARGVPFFLLRVDNAGNVSKRFSSGTFPFSKFGGTCPL
HHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHCCCCCCHHHCCCCCCC
WNVHSTFDTPDRLLKQVIELPDGSRYFSIAQMVRRPVAPHPQPQPRFAIGLGCEIRHASK
CCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEECCCEEHHHCH
LTYAAGMDLEKAEGTPIGVNCRLCERENCSQRAEPPITRTLILDENTRRASSFAFSNARE
HHHHHCCCCHHCCCCCCCCEEEECCCCCCHHCCCCCCEEEEEECCCCCHHHHHHHHHCCC
L
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]