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The map label for this gene is ynaI [C]

Identifier: 86751301

GI number: 86751301

Start: 4766136

End: 4767824

Strand: Reverse

Name: ynaI [C]

Synonym: RPB_4194

Alternate gene names: 86751301

Gene position: 4767824-4766136 (Counterclockwise)

Preceding gene: 86751302

Following gene: 86751300

Centisome position: 89.42

GC content: 67.08

Gene sequence:

>1689_bases
ATGTTTCGATCGCTGCTTCTTGTTTGGGCAATATTGGGAACGAGCGTCGCGTTTGCGCAGATCCCGGCACCGAACGGGAA
CGGCAACGGCAGTCCTCCCGCCAAGGCGGAGGAGAAGCCCGCCGATCCGCTCGGCCGCGATACGCCGGCCGGTATGGTCA
CCGGCTTTATCGATGCCGCCGCCGAGCAGAATTATGACAAGGCCGCGCAATATCTCGATCTCAGCCAGGAGAAGGGCGCC
TGGGGGCCGAGCGTCGCGCAGCAGCTGCAGCGCATTCTCGACCAGGGCGGCTACGTGTTTTCGCGGTTGCGGCTGAGTGC
GGATGCCGCCGGTGACCAGGACGACGGACTTGCGCCGGATCAGGACAAGTTCGGTGCCGTGCGCACCGATCACGGCAGCG
TCGATCTGATCGCGCAGCGGGTCGACGGCAAGGACGGCGTCAAGATTTGGCTGGTGTCGGCGCGGACGGTCGGTGAGCTG
CCGGCGCTGTCGCGCACGGTGACGTCGAGCCTGGTCGACAGGATCCTGCCCTATGCGCTCCGCGACGAATACCGGCTCGC
CGGCGTTCCGGCGGGCCACTGGCTGGCCGTCATCGTGCTCGCGGTGCTGACATTTTCGATCGTGTGGGCGATCACCGCCG
CGATCCTCTGGGTGGTCTTCCGCTTTCGCGGCCCGGAGTCCCGCATCAGTCGCGTGCTGAGCGCCTCGGCGCTGCCGATC
CGGCTGTTCTTCACCGCGATGTTGCTGCGCATCGCGCTGGTGCTGACCGGCGTGGCGATCGTCGCGCGCCAGCACATGTC
CGGCGCCACCGAACTGCTCGGCTGGATCGCGCTGTCCTGGATCGTCTGGCGGGTGGTCGACGCGCTGGCCGAATTCGCCA
TCGCCCGGATGACGCTGCGCGGCCGGCTGTCGATGCTGTCGGCGGTGACCTTCATCCGGCGCAGCGTCAAGTTCGCGCTG
ATCGCTTTCGCGGCGATCGCCGGGCTCAACGCGCTGGGCTACAATGTCACCGCGGGTCTCGCCGCTCTGGGCATCGGCGG
TATCGCGATCGCGCTCGGCGCGCAGAAGACCATCGAACATCTGGTCGGCAGCCTGACTCTGGTGACCGATCAGCCGATGC
GGGTGGGCGATTTCTGCAAATTCGGCGAGACGATGGGCACGATCGAGGACATCGGCATGCGCTCGACCCGGATTCGGACC
CTCGACCGCACCCTGGTCACCGTGCCGAACGGCGCGCTGGCCGCGGTGCAGATCGAGAACTTCAGCCGCCGGGACAAGTT
CTGGTACCACCCGATTCTGGACCTGCGCTACGAGACCACGCCGGACCAGATGCGCGGCCTGATCGCGGCGATCCGCGAGA
TGCTGCTGGAGCATCCGAAGGTCGACAACGACCCGGCGCGGGTGCGGCTGCTCGGCTTCGGGTCGAATTCGCTGCGGGTC
GAAATCTTCGCCTACATCCACGCCGTGAGCATGGATGAGTTCCTGGAAGTGCAGGAAGATCTGACTCTGAGGCTGATGGA
ATTGGTCGAGGCGGCGGGGACCGGCTTCGCCTTCGCGTCGCAGACCGTCTATTTCGCGCGGGACAAAGCTCCGTCGTCGG
GCCGCTCGCCGGCTCTCGCGCCGGCGGACCACCCGGACGGCGATAGCGCCGCGTCGCAGCATCGCGCGGGCGCCGCTGCT
CGCACCTGA

Upstream 100 bases:

>100_bases
AAACGCCGCGCCATCACATCAATGGCTCATTTCTCTGGTCAAACTACGGCCTCACCGACACGATTTGGAAGGACTGGTTT
TGGCGGCACGTGCGATGGCG

Downstream 100 bases:

>100_bases
GGCGCCTGGCGGTTGCAGCCGGGCGGTGGACCGCGCCCGGCTGCGATGCTATTGCGGCGTCCGCCATGACCGATCTGTCC
CTGACCATCCTTCCCGAAAG

Product: MscS mechanosensitive ion channel

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 562; Mature: 562

Protein sequence:

>562_residues
MFRSLLLVWAILGTSVAFAQIPAPNGNGNGSPPAKAEEKPADPLGRDTPAGMVTGFIDAAAEQNYDKAAQYLDLSQEKGA
WGPSVAQQLQRILDQGGYVFSRLRLSADAAGDQDDGLAPDQDKFGAVRTDHGSVDLIAQRVDGKDGVKIWLVSARTVGEL
PALSRTVTSSLVDRILPYALRDEYRLAGVPAGHWLAVIVLAVLTFSIVWAITAAILWVVFRFRGPESRISRVLSASALPI
RLFFTAMLLRIALVLTGVAIVARQHMSGATELLGWIALSWIVWRVVDALAEFAIARMTLRGRLSMLSAVTFIRRSVKFAL
IAFAAIAGLNALGYNVTAGLAALGIGGIAIALGAQKTIEHLVGSLTLVTDQPMRVGDFCKFGETMGTIEDIGMRSTRIRT
LDRTLVTVPNGALAAVQIENFSRRDKFWYHPILDLRYETTPDQMRGLIAAIREMLLEHPKVDNDPARVRLLGFGSNSLRV
EIFAYIHAVSMDEFLEVQEDLTLRLMELVEAAGTGFAFASQTVYFARDKAPSSGRSPALAPADHPDGDSAASQHRAGAAA
RT

Sequences:

>Translated_562_residues
MFRSLLLVWAILGTSVAFAQIPAPNGNGNGSPPAKAEEKPADPLGRDTPAGMVTGFIDAAAEQNYDKAAQYLDLSQEKGA
WGPSVAQQLQRILDQGGYVFSRLRLSADAAGDQDDGLAPDQDKFGAVRTDHGSVDLIAQRVDGKDGVKIWLVSARTVGEL
PALSRTVTSSLVDRILPYALRDEYRLAGVPAGHWLAVIVLAVLTFSIVWAITAAILWVVFRFRGPESRISRVLSASALPI
RLFFTAMLLRIALVLTGVAIVARQHMSGATELLGWIALSWIVWRVVDALAEFAIARMTLRGRLSMLSAVTFIRRSVKFAL
IAFAAIAGLNALGYNVTAGLAALGIGGIAIALGAQKTIEHLVGSLTLVTDQPMRVGDFCKFGETMGTIEDIGMRSTRIRT
LDRTLVTVPNGALAAVQIENFSRRDKFWYHPILDLRYETTPDQMRGLIAAIREMLLEHPKVDNDPARVRLLGFGSNSLRV
EIFAYIHAVSMDEFLEVQEDLTLRLMELVEAAGTGFAFASQTVYFARDKAPSSGRSPALAPADHPDGDSAASQHRAGAAA
RT
>Mature_562_residues
MFRSLLLVWAILGTSVAFAQIPAPNGNGNGSPPAKAEEKPADPLGRDTPAGMVTGFIDAAAEQNYDKAAQYLDLSQEKGA
WGPSVAQQLQRILDQGGYVFSRLRLSADAAGDQDDGLAPDQDKFGAVRTDHGSVDLIAQRVDGKDGVKIWLVSARTVGEL
PALSRTVTSSLVDRILPYALRDEYRLAGVPAGHWLAVIVLAVLTFSIVWAITAAILWVVFRFRGPESRISRVLSASALPI
RLFFTAMLLRIALVLTGVAIVARQHMSGATELLGWIALSWIVWRVVDALAEFAIARMTLRGRLSMLSAVTFIRRSVKFAL
IAFAAIAGLNALGYNVTAGLAALGIGGIAIALGAQKTIEHLVGSLTLVTDQPMRVGDFCKFGETMGTIEDIGMRSTRIRT
LDRTLVTVPNGALAAVQIENFSRRDKFWYHPILDLRYETTPDQMRGLIAAIREMLLEHPKVDNDPARVRLLGFGSNSLRV
EIFAYIHAVSMDEFLEVQEDLTLRLMELVEAAGTGFAFASQTVYFARDKAPSSGRSPALAPADHPDGDSAASQHRAGAAA
RT

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1787591, Length=233, Percent_Identity=27.0386266094421, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1789291, Length=272, Percent_Identity=26.4705882352941, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1786670, Length=279, Percent_Identity=25.4480286738351, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 60716; Mature: 60716

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRSLLLVWAILGTSVAFAQIPAPNGNGNGSPPAKAEEKPADPLGRDTPAGMVTGFIDAA
CHHHHHHHHHHHHCHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
AEQNYDKAAQYLDLSQEKGAWGPSVAQQLQRILDQGGYVFSRLRLSADAAGDQDDGLAPD
HHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEHHHHHHCCCCCCCCCCCCCC
QDKFGAVRTDHGSVDLIAQRVDGKDGVKIWLVSARTVGELPALSRTVTSSLVDRILPYAL
CHHCCCEECCCCCHHHHHHHCCCCCCCEEEEEECCCHHCCHHHHHHHHHHHHHHHHHHHH
RDEYRLAGVPAGHWLAVIVLAVLTFSIVWAITAAILWVVFRFRGPESRISRVLSASALPI
CCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHH
RLFFTAMLLRIALVLTGVAIVARQHMSGATELLGWIALSWIVWRVVDALAEFAIARMTLR
HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRLSMLSAVTFIRRSVKFALIAFAAIAGLNALGYNVTAGLAALGIGGIAIALGAQKTIEH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHH
LVGSLTLVTDQPMRVGDFCKFGETMGTIEDIGMRSTRIRTLDRTLVTVPNGALAAVQIEN
HHCCEEEEECCCCCHHHHHHHHHHHCCHHHHCCCHHHHHHHCCEEEECCCCCEEEEEECC
FSRRDKFWYHPILDLRYETTPDQMRGLIAAIREMLLEHPKVDNDPARVRLLGFGSNSLRV
CCCCCCCEECCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEE
EIFAYIHAVSMDEFLEVQEDLTLRLMELVEAAGTGFAFASQTVYFARDKAPSSGRSPALA
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCEEEEEECCCCCCCCCCCCC
PADHPDGDSAASQHRAGAAART
CCCCCCCCHHHHHHHCCCCCCC
>Mature Secondary Structure
MFRSLLLVWAILGTSVAFAQIPAPNGNGNGSPPAKAEEKPADPLGRDTPAGMVTGFIDAA
CHHHHHHHHHHHHCHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
AEQNYDKAAQYLDLSQEKGAWGPSVAQQLQRILDQGGYVFSRLRLSADAAGDQDDGLAPD
HHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEHHHHHHCCCCCCCCCCCCCC
QDKFGAVRTDHGSVDLIAQRVDGKDGVKIWLVSARTVGELPALSRTVTSSLVDRILPYAL
CHHCCCEECCCCCHHHHHHHCCCCCCCEEEEEECCCHHCCHHHHHHHHHHHHHHHHHHHH
RDEYRLAGVPAGHWLAVIVLAVLTFSIVWAITAAILWVVFRFRGPESRISRVLSASALPI
CCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHH
RLFFTAMLLRIALVLTGVAIVARQHMSGATELLGWIALSWIVWRVVDALAEFAIARMTLR
HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRLSMLSAVTFIRRSVKFALIAFAAIAGLNALGYNVTAGLAALGIGGIAIALGAQKTIEH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHH
LVGSLTLVTDQPMRVGDFCKFGETMGTIEDIGMRSTRIRTLDRTLVTVPNGALAAVQIEN
HHCCEEEEECCCCCHHHHHHHHHHHCCHHHHCCCHHHHHHHCCEEEECCCCCEEEEEECC
FSRRDKFWYHPILDLRYETTPDQMRGLIAAIREMLLEHPKVDNDPARVRLLGFGSNSLRV
CCCCCCCEECCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEE
EIFAYIHAVSMDEFLEVQEDLTLRLMELVEAAGTGFAFASQTVYFARDKAPSSGRSPALA
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCEEEEEECCCCCCCCCCCCC
PADHPDGDSAASQHRAGAAART
CCCCCCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]