| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is bchD [H]
Identifier: 86751124
GI number: 86751124
Start: 4582895
End: 4584655
Strand: Reverse
Name: bchD [H]
Synonym: RPB_4016
Alternate gene names: 86751124
Gene position: 4584655-4582895 (Counterclockwise)
Preceding gene: 86751125
Following gene: 86751121
Centisome position: 85.99
GC content: 72.17
Gene sequence:
>1761_bases ATGAGCATCTCGCCAGCATGGTCCGATGCGGTGACCGCGGCGCAGTTGTTCGCGGTGGATCCGGTCGGCACCGGCGGCGT GCTGCTGCGCTCGCGCGCCGGTCCGGTGCGCGACCGCTGGCTGGCGACGCTGCGCGCCGCGCTGCCCCCTGAGCAGCCCT ATCGGAACTTGCCGCTGCACATCGCCGATGGCCGCCTGCTCGGCGGCCTCGATCTGTCCGCGACGCTGCTCGCCGGCCGC CCGGTCGCCGAGCGCGGATTGCTGGCGGAGGCCGATGGCGGCGTGCTGGTGGTGGCGATGGCCGAGCGGATGCAGTCCTC GACCAACGTGTATCTGACCGCCGCGATGGACGCGCAGGAGACCGCGGTCGAGCGCGACGGCCTGTCGCTGCGGATGCCGG CGCGGTTCGGCGTGGTGGCGCTCGACGAAGGCCTCGAGGACGAGTTCGCGCCGGCCGGCCTGCGCGACCGGCTCGGCTTC CATCTCGATCTCGATCAGTTCGCCTGGCGCGACACCGAGGATTTCCCGGTCCAGCTCGACGACATCATGGCGGCGCGTGC GCGCCTGTCCGCGATCAAGGTCGAGAGCGCGCAGATCGAGGCGATCTGCACGGCGGCCGCCGCGCTCGGCATCATCTCGC TGCGCGCGCCGCTGCTGGCGATCCGCGCGGCGCGGGCGAGTGCGGCGCTGTTCGATCGTGTCGTCATCGAGCAGGACGAC CTCACGCTCGCCGCGCGTCTGGTGCTGGCGCCGCGCGCCACCGTGTTTCCGCAAGCCGATCAGCCCGACCAGGCCGAGCC GCCGCCGCCGGAGCCGCCGCCGGAGGACAATTCGGAAGAGAATAACGATCAGGAACAGCAGACGCCGGACATCGACAAGG CGCTCGACGAGGTGATCCTCGCCGCGGTGAAGGCCGCGATGCCGCCCGGCGTGCTCGAAGCGCTGCGCGCCTCCGCCGGC CGCGCCCGCGCACGTTCGGCGGGCAAGGCCGGCCAGTTGCAGAAGTCGAAGAAGCGCGGGCGTCCCACGGGCAGCGTGCG CGGCGAATTGCGCGACGGCTCCAAGCTCAACGTCATCGAGACGCTGCGCGCCGCCGCACCCTGGCAGCCGCTGCGCCGGC GCCAGGCCGCGGGCCGCTCCGGTAGCGCGCCGCGCATTCTGGTCGAGAAGGACGATTTCCGGATCGCGCGCTTCAAGCAG CGCACCGAGACCATCACCATCTTCGTGGTCGATGCTTCCGGCTCCGCGGCGCTACATCGGCTCGCCGAAGCCAAGGGCGC GGTCGAGTTGTTACTTGCGGATTGCTACGTGCGCCGCGATCAGGTGGCGATGATCGCGTTCCGCGGGAGCATCGCCGAGA TCCTGCTGCCGCCGACGCGGTCGCTGGCGCGCGCCAAGCGCAGCCTCGCCGGCCTGCCCGGCGGCGGCGGCACGCCGCTC GCGGCCGGGCTCGACGCCGCCTTCATGCTGGCCGACTCGATCAAGCGCAAGGGCCAGACCCCGACCGTGATCGTGCTCAC CGACGGCCGCGCCAACATCGCCCGCGACGGCGCGCCGGGCCGGCCGCAGGCCGAGGAAGACGCCAAGGCCTCGGCGCGGC AATTCCGCGTCGCCGGCATCAATGCGGTGGTGATCGACATGTCGCCGCGGCCGGGGCCGCAGGCCGAAGCCTTCGCCAAG GAAATGGACGCGCGCTATCTGCCGATGCCCTATGCGGACGCCAATGTGCTGGCGAAGGCGGTCACTGCGGCGACGGGCTG A
Upstream 100 bases:
>100_bases GGATCGCGCCGTCGGCGCTGCGGCATCGGCTGCGCCGCAATCCTCTGGACGACGCCGGATCGAGCGTTCGTGTCGATCGG GCGCTCGCTGAAATCTTCGG
Downstream 100 bases:
>100_bases CCGACGTCAAGCGTCCAGGACGAAGGTCTGGTTGCCGTCGTCGTTCCGGGGCTTGGCATCGGTCCAGTTTGCCGACGCCT GTTCCGACGCGAGACGTTCG
Product: magnesium chelatase subunit D
Products: NA
Alternate protein names: Mg-chelatase subunit D; Mg-protoporphyrin IX chelatase [H]
Number of amino acids: Translated: 586; Mature: 585
Protein sequence:
>586_residues MSISPAWSDAVTAAQLFAVDPVGTGGVLLRSRAGPVRDRWLATLRAALPPEQPYRNLPLHIADGRLLGGLDLSATLLAGR PVAERGLLAEADGGVLVVAMAERMQSSTNVYLTAAMDAQETAVERDGLSLRMPARFGVVALDEGLEDEFAPAGLRDRLGF HLDLDQFAWRDTEDFPVQLDDIMAARARLSAIKVESAQIEAICTAAAALGIISLRAPLLAIRAARASAALFDRVVIEQDD LTLAARLVLAPRATVFPQADQPDQAEPPPPEPPPEDNSEENNDQEQQTPDIDKALDEVILAAVKAAMPPGVLEALRASAG RARARSAGKAGQLQKSKKRGRPTGSVRGELRDGSKLNVIETLRAAAPWQPLRRRQAAGRSGSAPRILVEKDDFRIARFKQ RTETITIFVVDASGSAALHRLAEAKGAVELLLADCYVRRDQVAMIAFRGSIAEILLPPTRSLARAKRSLAGLPGGGGTPL AAGLDAAFMLADSIKRKGQTPTVIVLTDGRANIARDGAPGRPQAEEDAKASARQFRVAGINAVVIDMSPRPGPQAEAFAK EMDARYLPMPYADANVLAKAVTAATG
Sequences:
>Translated_586_residues MSISPAWSDAVTAAQLFAVDPVGTGGVLLRSRAGPVRDRWLATLRAALPPEQPYRNLPLHIADGRLLGGLDLSATLLAGR PVAERGLLAEADGGVLVVAMAERMQSSTNVYLTAAMDAQETAVERDGLSLRMPARFGVVALDEGLEDEFAPAGLRDRLGF HLDLDQFAWRDTEDFPVQLDDIMAARARLSAIKVESAQIEAICTAAAALGIISLRAPLLAIRAARASAALFDRVVIEQDD LTLAARLVLAPRATVFPQADQPDQAEPPPPEPPPEDNSEENNDQEQQTPDIDKALDEVILAAVKAAMPPGVLEALRASAG RARARSAGKAGQLQKSKKRGRPTGSVRGELRDGSKLNVIETLRAAAPWQPLRRRQAAGRSGSAPRILVEKDDFRIARFKQ RTETITIFVVDASGSAALHRLAEAKGAVELLLADCYVRRDQVAMIAFRGSIAEILLPPTRSLARAKRSLAGLPGGGGTPL AAGLDAAFMLADSIKRKGQTPTVIVLTDGRANIARDGAPGRPQAEEDAKASARQFRVAGINAVVIDMSPRPGPQAEAFAK EMDARYLPMPYADANVLAKAVTAATG >Mature_585_residues SISPAWSDAVTAAQLFAVDPVGTGGVLLRSRAGPVRDRWLATLRAALPPEQPYRNLPLHIADGRLLGGLDLSATLLAGRP VAERGLLAEADGGVLVVAMAERMQSSTNVYLTAAMDAQETAVERDGLSLRMPARFGVVALDEGLEDEFAPAGLRDRLGFH LDLDQFAWRDTEDFPVQLDDIMAARARLSAIKVESAQIEAICTAAAALGIISLRAPLLAIRAARASAALFDRVVIEQDDL TLAARLVLAPRATVFPQADQPDQAEPPPPEPPPEDNSEENNDQEQQTPDIDKALDEVILAAVKAAMPPGVLEALRASAGR ARARSAGKAGQLQKSKKRGRPTGSVRGELRDGSKLNVIETLRAAAPWQPLRRRQAAGRSGSAPRILVEKDDFRIARFKQR TETITIFVVDASGSAALHRLAEAKGAVELLLADCYVRRDQVAMIAFRGSIAEILLPPTRSLARAKRSLAGLPGGGGTPLA AGLDAAFMLADSIKRKGQTPTVIVLTDGRANIARDGAPGRPQAEEDAKASARQFRVAGINAVVIDMSPRPGPQAEAFAKE MDARYLPMPYADANVLAKAVTAATG
Specific function: Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX [H]
COG id: COG1240
COG function: function code H; Mg-chelatase subunit ChlD
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 VWFA domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011776 - InterPro: IPR002035 [H]
Pfam domain/function: PF00092 VWA [H]
EC number: =6.6.1.1 [H]
Molecular weight: Translated: 62246; Mature: 62115
Theoretical pI: Translated: 7.52; Mature: 7.52
Prosite motif: PS50234 VWFA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSISPAWSDAVTAAQLFAVDPVGTGGVLLRSRAGPVRDRWLATLRAALPPEQPYRNLPLH CCCCCCCHHHHHHHHHEEECCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCEE IADGRLLGGLDLSATLLAGRPVAERGLLAEADGGVLVVAMAERMQSSTNVYLTAAMDAQE EECCCEEECCCCEEHEECCCCHHHCCCEEECCCCEEEEEEHHHHCCCCCEEEEEECCHHH TAVERDGLSLRMPARFGVVALDEGLEDEFAPAGLRDRLGFHLDLDQFAWRDTEDFPVQLD HHHHHCCCEEECCCCCCEEEECCCCCCCCCCCCHHHHCCCEEEHHHHHCCCCCCCCEEHH DIMAARARLSAIKVESAQIEAICTAAAALGIISLRAPLLAIRAARASAALFDRVVIEQDD HHHHHHHHHHHEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCC LTLAARLVLAPRATVFPQADQPDQAEPPPPEPPPEDNSEENNDQEQQTPDIDKALDEVIL HHEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHH AAVKAAMPPGVLEALRASAGRARARSAGKAGQLQKSKKRGRPTGSVRGELRDGSKLNVIE HHHHHHCCHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH TLRAAAPWQPLRRRQAAGRSGSAPRILVEKDDFRIARFKQRTETITIFVVDASGSAALHR HHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHCCCCEEEEEEEECCCHHHHHH LAEAKGAVELLLADCYVRRDQVAMIAFRGSIAEILLPPTRSLARAKRSLAGLPGGGGTPL HHHHCCHHHHHHHHHHHCCCCEEEEEECCCCEEEECCCCHHHHHHHHHHCCCCCCCCCCH AAGLDAAFMLADSIKRKGQTPTVIVLTDGRANIARDGAPGRPQAEEDAKASARQFRVAGI HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHEEEECC NAVVIDMSPRPGPQAEAFAKEMDARYLPMPYADANVLAKAVTAATG EEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCC >Mature Secondary Structure SISPAWSDAVTAAQLFAVDPVGTGGVLLRSRAGPVRDRWLATLRAALPPEQPYRNLPLH CCCCCCHHHHHHHHHEEECCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCEE IADGRLLGGLDLSATLLAGRPVAERGLLAEADGGVLVVAMAERMQSSTNVYLTAAMDAQE EECCCEEECCCCEEHEECCCCHHHCCCEEECCCCEEEEEEHHHHCCCCCEEEEEECCHHH TAVERDGLSLRMPARFGVVALDEGLEDEFAPAGLRDRLGFHLDLDQFAWRDTEDFPVQLD HHHHHCCCEEECCCCCCEEEECCCCCCCCCCCCHHHHCCCEEEHHHHHCCCCCCCCEEHH DIMAARARLSAIKVESAQIEAICTAAAALGIISLRAPLLAIRAARASAALFDRVVIEQDD HHHHHHHHHHHEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCC LTLAARLVLAPRATVFPQADQPDQAEPPPPEPPPEDNSEENNDQEQQTPDIDKALDEVIL HHEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHH AAVKAAMPPGVLEALRASAGRARARSAGKAGQLQKSKKRGRPTGSVRGELRDGSKLNVIE HHHHHHCCHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH TLRAAAPWQPLRRRQAAGRSGSAPRILVEKDDFRIARFKQRTETITIFVVDASGSAALHR HHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHCCCCEEEEEEEECCCHHHHHH LAEAKGAVELLLADCYVRRDQVAMIAFRGSIAEILLPPTRSLARAKRSLAGLPGGGGTPL HHHHCCHHHHHHHHHHHCCCCEEEEEECCCCEEEECCCCHHHHHHHHHHCCCCCCCCCCH AAGLDAAFMLADSIKRKGQTPTVIVLTDGRANIARDGAPGRPQAEEDAKASARQFRVAGI HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHEEEECC NAVVIDMSPRPGPQAEAFAKEMDARYLPMPYADANVLAKAVTAATG EEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA