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The map label for this gene is yhjC [C]

Identifier: 86750879

GI number: 86750879

Start: 4304550

End: 4305455

Strand: Direct

Name: yhjC [C]

Synonym: RPB_3770

Alternate gene names: 86750879

Gene position: 4304550-4305455 (Clockwise)

Preceding gene: 86750875

Following gene: 86750887

Centisome position: 80.74

GC content: 69.76

Gene sequence:

>906_bases
ATGGACCGGTTCGAGGCGATGTCGGTGCTGCTGGCGGTTGTCGATGCGGGCAGCCTGTCGGCCGGCGCAAGGCGGCTGCA
CGCCCCTCTGGCAACGATCAGCCGCAAGGTCGGCGAGCTCGAAAAGCACCTCGGCGTCCGCCTGGTTCGGCGGACCAGCC
GCGGCCTCACATTGACCGAGGAAGGACGCGCCTTCGTCGCCGCGTCGCGCCGCATCCTCGAGGAGCTGGAGACGGCGGAG
CGACAGGCCGCCGGCGACTACGGCGCGCTGCGCGGCGCACTCCACGTCACCGCGCCGGTCGCATTCGGTGAGCGGCATCT
GCTGCCGATCGCGTTGGACTTTCTGAAGCAGCAGCCGGAAATCAATCTGCGCCTGACGCTCGCCGACCAACAGGTCAGCC
TCGCCGACGCGCAGATCGACGTCGCCCTGCGGATCGGGCATCTGGCAGACAGCGCGCTGATCGGGACGCGCGTCGGCACG
GTGCGCCGGGTGTTGTGCGCGAGCCCCGACTATCTCGCTCGCCGGGGCGTGCCGCGCCGGCCGGACGACCTCGCCGGCCA
CGACGGCATCAGCTTCCAGGGCTTCGCGACCGCGCCCGAATGGCGCTACCGGCGGGACAGCGCCGCCTTCGCCGTCGACC
CGCGCCCCAAACTCGCGGTCAATACGACGGAGGCTGCGATCCAGTCGGCATTGGCGGGCGTCGGCATCATCCGCGTGCTG
TCCTATCAAGTCTCCGACCAGCTGCGCGCCGGACAGTTGCGGGAATTGCTGCCGGATTTCGCACCGGAACCGTTGCCGGT
GAACCTCATCCATGCGCCGGCGGTTCCCTTGCCGCCGAAGGTGCGGAGTTTCCTCGACTGGACCGCGCCCCGCCTGCGCG
CAGGCATAGGTCAATGGAGCGATTAG

Upstream 100 bases:

>100_bases
AGCCCGTCGGCCGTCCGTTTCGAAGAATGTTAGGACATCCAAAATCGACGGGGTATCTTGCTGTTCTGAGAGTTAGCCTC
TCGATTTATGGAAGGGCGCC

Downstream 100 bases:

>100_bases
TTCGCCCCCATCGTCTCCTTCACCTTCGCGACCAGCGCGCTGAGCGCGAAGGGCTTCGCCAGGAACGCGAATTGTTCGTT
CTCCGGCAGGCTCTTCTCGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MDRFEAMSVLLAVVDAGSLSAGARRLHAPLATISRKVGELEKHLGVRLVRRTSRGLTLTEEGRAFVAASRRILEELETAE
RQAAGDYGALRGALHVTAPVAFGERHLLPIALDFLKQQPEINLRLTLADQQVSLADAQIDVALRIGHLADSALIGTRVGT
VRRVLCASPDYLARRGVPRRPDDLAGHDGISFQGFATAPEWRYRRDSAAFAVDPRPKLAVNTTEAAIQSALAGVGIIRVL
SYQVSDQLRAGQLRELLPDFAPEPLPVNLIHAPAVPLPPKVRSFLDWTAPRLRAGIGQWSD

Sequences:

>Translated_301_residues
MDRFEAMSVLLAVVDAGSLSAGARRLHAPLATISRKVGELEKHLGVRLVRRTSRGLTLTEEGRAFVAASRRILEELETAE
RQAAGDYGALRGALHVTAPVAFGERHLLPIALDFLKQQPEINLRLTLADQQVSLADAQIDVALRIGHLADSALIGTRVGT
VRRVLCASPDYLARRGVPRRPDDLAGHDGISFQGFATAPEWRYRRDSAAFAVDPRPKLAVNTTEAAIQSALAGVGIIRVL
SYQVSDQLRAGQLRELLPDFAPEPLPVNLIHAPAVPLPPKVRSFLDWTAPRLRAGIGQWSD
>Mature_301_residues
MDRFEAMSVLLAVVDAGSLSAGARRLHAPLATISRKVGELEKHLGVRLVRRTSRGLTLTEEGRAFVAASRRILEELETAE
RQAAGDYGALRGALHVTAPVAFGERHLLPIALDFLKQQPEINLRLTLADQQVSLADAQIDVALRIGHLADSALIGTRVGT
VRRVLCASPDYLARRGVPRRPDDLAGHDGISFQGFATAPEWRYRRDSAAFAVDPRPKLAVNTTEAAIQSALAGVGIIRVL
SYQVSDQLRAGQLRELLPDFAPEPLPVNLIHAPAVPLPPKVRSFLDWTAPRLRAGIGQWSD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=301, Percent_Identity=31.2292358803987, Blast_Score=144, Evalue=6e-36,
Organism=Escherichia coli, GI1786401, Length=294, Percent_Identity=30.2721088435374, Blast_Score=144, Evalue=9e-36,
Organism=Escherichia coli, GI1789639, Length=289, Percent_Identity=29.0657439446367, Blast_Score=137, Evalue=6e-34,
Organism=Escherichia coli, GI1789440, Length=256, Percent_Identity=26.953125, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI87081978, Length=280, Percent_Identity=27.5, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787128, Length=283, Percent_Identity=24.3816254416961, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1787589, Length=267, Percent_Identity=27.3408239700375, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1789173, Length=248, Percent_Identity=25.8064516129032, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788706, Length=278, Percent_Identity=21.9424460431655, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32705; Mature: 32705

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRFEAMSVLLAVVDAGSLSAGARRLHAPLATISRKVGELEKHLGVRLVRRTSRGLTLTE
CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC
EGRAFVAASRRILEELETAERQAAGDYGALRGALHVTAPVAFGERHLLPIALDFLKQQPE
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHEEEEEEECCCCCCHHHHHHHHHHCCCC
INLRLTLADQQVSLADAQIDVALRIGHLADSALIGTRVGTVRRVLCASPDYLARRGVPRR
CEEEEEEECCCEEHHHHHEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCC
PDDLAGHDGISFQGFATAPEWRYRRDSAAFAVDPRPKLAVNTTEAAIQSALAGVGIIRVL
CCCCCCCCCCCCCCCCCCCCHHCCCCCCCEEECCCCCEEECHHHHHHHHHHHHHHHHHHH
SYQVSDQLRAGQLRELLPDFAPEPLPVNLIHAPAVPLPPKVRSFLDWTAPRLRAGIGQWS
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHCHHHHHHCCCCCC
D
C
>Mature Secondary Structure
MDRFEAMSVLLAVVDAGSLSAGARRLHAPLATISRKVGELEKHLGVRLVRRTSRGLTLTE
CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC
EGRAFVAASRRILEELETAERQAAGDYGALRGALHVTAPVAFGERHLLPIALDFLKQQPE
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHEEEEEEECCCCCCHHHHHHHHHHCCCC
INLRLTLADQQVSLADAQIDVALRIGHLADSALIGTRVGTVRRVLCASPDYLARRGVPRR
CEEEEEEECCCEEHHHHHEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCC
PDDLAGHDGISFQGFATAPEWRYRRDSAAFAVDPRPKLAVNTTEAAIQSALAGVGIIRVL
CCCCCCCCCCCCCCCCCCCCHHCCCCCCCEEECCCCCEEECHHHHHHHHHHHHHHHHHHH
SYQVSDQLRAGQLRELLPDFAPEPLPVNLIHAPAVPLPPKVRSFLDWTAPRLRAGIGQWS
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHCHHHHHHCCCCCC
D
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]